Gcaud7539.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7539.t2
Unique Name	Gcaud7539.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:49842..51608 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7539	Gcaud7539	Gracilaria caudata M_176_S67 male	gene	NODE_51_length_65224_cov_4.623524 49842..52178 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7539.t2.stop1	Gcaud7539.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_51_length_65224_cov_4.623524 49842..49844 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7539.t2.CDS1	Gcaud7539.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_51_length_65224_cov_4.623524 49842..51608 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7539.t2.exon1	Gcaud7539.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_51_length_65224_cov_4.623524 49842..51608 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7539.t2.start1	Gcaud7539.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_51_length_65224_cov_4.623524 51606..51608 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7539.t2	Gcaud7539.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_51_length_65224_cov_4.623524 49842..51608 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_51_length_65224_cov_4.623524:49842..51608-
coding sequence from alignment at NODE_51_length_65224_cov_4.623524:49842..51608-

mRNA sequence

>Gcaud7539.t2 ID=Gcaud7539.t2|Name=Gcaud7539.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=589bp
LREAIAAQNAGVVFDRAKFDEHQTAARQRILSDFYTRVNQIRYLAWLQSR
QLGQRNAALSTQSQSATHDDLATSFAFQTQSQERALESALRPGLFGNGHG
QPVINRSGSNADYAMNGSTRILSSLQNKGESNTSRDPVYEVVDARDLESR
LLEVNKDKPPRAKHDRNLDNRAVDGRAEARTHGKKARRLESMTDKDQELV
FRVHLRQVESAVTYKDDYYSGMYRKNEKLGVGDLYSDLAKRVNEMRLRNR
MRGTSGRPYRSRRSKRVLQPNENQLSSSPQSIESSMNALATALGSVQTWN
PRAPRRVMDFSSIERKTGKGSESKLLRDDERVKVRHEIERGYDIMAVIHD
IVRGESSEVLEDQIQNLLQTLHIESTDEEPDNSAIVANPGLRFFGTLCVL
EKGRRYLARVLDILDISERIRVIPFVFESLGAMIYSLQRSRRSALSGEGD
IVAKSLQTIRDSHTSAFDCITMLNSFSSTHSARPDAFLTTFRSATGAKLM
YCCMQRISAGLYKKEIDKEDVSRAGVGKLAKVFTEMLQRIFDKAELVNRA
WEVTASFDSILAGEARSLLRAELNRLLRSGAAPPPPEG*

spliced messenger RNA

>Gcaud7539.t2 ID=Gcaud7539.t2|Name=Gcaud7539.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:49842..51608- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAGAGAAGCAATTGCAGCCCAGAACGCAGGTGTTGTCTTTGACAGGGC
CAAGTTTGATGAACATCAAACCGCTGCCCGACAACGGATACTCAGTGACT
TTTACACTCGTGTCAATCAGATTCGCTATCTTGCTTGGCTCCAGTCGCGT
CAGCTAGGTCAACGCAACGCAGCACTATCGACGCAAAGCCAAAGTGCTAC
GCATGATGACCTGGCGACGTCTTTTGCTTTTCAAACCCAAAGTCAGGAGC
GTGCCTTGGAGAGCGCGCTCAGACCTGGTCTGTTTGGCAATGGTCACGGG
CAGCCTGTCATCAATCGTTCCGGTTCAAACGCAGATTATGCTATGAACGG
CAGTACGCGAATTCTTTCTTCTCTTCAAAACAAGGGAGAGTCAAACACAT
CACGTGATCCTGTATATGAAGTAGTTGACGCACGGGACTTGGAAAGCCGC
CTTTTGGAGGTGAACAAGGATAAGCCTCCGAGAGCGAAACATGATCGAAA
TTTGGACAACAGAGCCGTCGACGGAAGGGCAGAAGCTAGAACGCATGGCA
AGAAGGCACGTCGTCTTGAATCTATGACCGACAAGGATCAAGAGCTGGTC
TTCAGGGTCCACTTGAGACAGGTAGAATCGGCAGTTACATACAAGGATGA
TTATTATAGTGGTATGTATCGCAAGAATGAAAAGCTTGGGGTGGGAGACC
TTTACTCAGATCTTGCGAAGCGCGTTAATGAGATGAGACTAAGAAACCGC
ATGAGAGGGACAAGCGGCCGTCCATACAGGAGTCGTCGATCGAAACGTGT
CCTGCAACCAAATGAAAACCAGTTATCTTCCTCTCCACAGTCTATTGAGT
CTTCAATGAACGCTCTAGCAACTGCACTTGGTTCAGTTCAAACTTGGAAC
CCCAGGGCCCCAAGAAGGGTTATGGACTTCAGCTCGATTGAACGCAAAAC
TGGCAAAGGGTCGGAATCGAAACTGCTCCGTGACGACGAGAGAGTGAAAG
TTCGACATGAGATTGAGAGAGGTTATGACATCATGGCTGTCATTCATGAC
ATCGTTAGGGGGGAAAGCTCGGAAGTGCTAGAAGATCAGATTCAGAATCT
TCTTCAAACATTACACATTGAAAGCACCGACGAAGAACCGGATAATTCTG
CGATCGTTGCAAATCCCGGGCTTCGATTTTTTGGCACGCTTTGCGTTCTA
GAAAAGGGCAGAAGATATCTGGCAAGAGTGCTTGACATTCTTGACATATC
GGAAAGAATTCGCGTTATACCGTTTGTGTTCGAGAGCCTTGGGGCCATGA
TATATTCTCTCCAACGCTCTCGACGCTCTGCTTTGTCAGGGGAAGGCGAT
ATTGTAGCCAAATCTCTTCAAACAATACGTGACTCGCACACGTCCGCATT
CGATTGCATTACAATGCTGAATTCATTCAGCTCAACCCATTCTGCTCGTC
CGGATGCCTTCCTGACTACATTTCGAAGCGCAACCGGTGCGAAACTTATG
TATTGTTGTATGCAAAGGATATCTGCAGGCTTGTACAAAAAGGAGATAGA
TAAGGAAGACGTGAGTCGAGCCGGGGTTGGTAAGCTCGCGAAAGTGTTTA
CTGAAATGCTACAACGCATATTTGATAAGGCAGAGCTGGTTAACAGAGCG
TGGGAAGTGACTGCAAGTTTCGATAGCATTCTAGCAGGCGAGGCGAGATC
ATTGCTTCGCGCAGAGCTCAATCGATTGTTGCGCAGTGGTGCAGCTCCCC
CACCCCCAGAAGGATAG

protein sequence of Gcaud7539.t2

>Gcaud7539.t2 ID=Gcaud7539.t2|Name=Gcaud7539.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=589bp
LREAIAAQNAGVVFDRAKFDEHQTAARQRILSDFYTRVNQIRYLAWLQSR
QLGQRNAALSTQSQSATHDDLATSFAFQTQSQERALESALRPGLFGNGHG
QPVINRSGSNADYAMNGSTRILSSLQNKGESNTSRDPVYEVVDARDLESR
LLEVNKDKPPRAKHDRNLDNRAVDGRAEARTHGKKARRLESMTDKDQELV
FRVHLRQVESAVTYKDDYYSGMYRKNEKLGVGDLYSDLAKRVNEMRLRNR
MRGTSGRPYRSRRSKRVLQPNENQLSSSPQSIESSMNALATALGSVQTWN
PRAPRRVMDFSSIERKTGKGSESKLLRDDERVKVRHEIERGYDIMAVIHD
IVRGESSEVLEDQIQNLLQTLHIESTDEEPDNSAIVANPGLRFFGTLCVL
EKGRRYLARVLDILDISERIRVIPFVFESLGAMIYSLQRSRRSALSGEGD
IVAKSLQTIRDSHTSAFDCITMLNSFSSTHSARPDAFLTTFRSATGAKLM
YCCMQRISAGLYKKEIDKEDVSRAGVGKLAKVFTEMLQRIFDKAELVNRA
WEVTASFDSILAGEARSLLRAELNRLLRSGAAPPPPEG*

mRNA from alignment at NODE_51_length_65224_cov_4.623524:49842..51608-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7539.t2 ID=Gcaud7539.t2|Name=Gcaud7539.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:49842..51608- (Gracilaria caudata M_176_S67 male)
CTGAGAGAAGCAATTGCAGCCCAGAACGCAGGTGTTGTCTTTGACAGGGC
CAAGTTTGATGAACATCAAACCGCTGCCCGACAACGGATACTCAGTGACT
TTTACACTCGTGTCAATCAGATTCGCTATCTTGCTTGGCTCCAGTCGCGT
CAGCTAGGTCAACGCAACGCAGCACTATCGACGCAAAGCCAAAGTGCTAC
GCATGATGACCTGGCGACGTCTTTTGCTTTTCAAACCCAAAGTCAGGAGC
GTGCCTTGGAGAGCGCGCTCAGACCTGGTCTGTTTGGCAATGGTCACGGG
CAGCCTGTCATCAATCGTTCCGGTTCAAACGCAGATTATGCTATGAACGG
CAGTACGCGAATTCTTTCTTCTCTTCAAAACAAGGGAGAGTCAAACACAT
CACGTGATCCTGTATATGAAGTAGTTGACGCACGGGACTTGGAAAGCCGC
CTTTTGGAGGTGAACAAGGATAAGCCTCCGAGAGCGAAACATGATCGAAA
TTTGGACAACAGAGCCGTCGACGGAAGGGCAGAAGCTAGAACGCATGGCA
AGAAGGCACGTCGTCTTGAATCTATGACCGACAAGGATCAAGAGCTGGTC
TTCAGGGTCCACTTGAGACAGGTAGAATCGGCAGTTACATACAAGGATGA
TTATTATAGTGGTATGTATCGCAAGAATGAAAAGCTTGGGGTGGGAGACC
TTTACTCAGATCTTGCGAAGCGCGTTAATGAGATGAGACTAAGAAACCGC
ATGAGAGGGACAAGCGGCCGTCCATACAGGAGTCGTCGATCGAAACGTGT
CCTGCAACCAAATGAAAACCAGTTATCTTCCTCTCCACAGTCTATTGAGT
CTTCAATGAACGCTCTAGCAACTGCACTTGGTTCAGTTCAAACTTGGAAC
CCCAGGGCCCCAAGAAGGGTTATGGACTTCAGCTCGATTGAACGCAAAAC
TGGCAAAGGGTCGGAATCGAAACTGCTCCGTGACGACGAGAGAGTGAAAG
TTCGACATGAGATTGAGAGAGGTTATGACATCATGGCTGTCATTCATGAC
ATCGTTAGGGGGGAAAGCTCGGAAGTGCTAGAAGATCAGATTCAGAATCT
TCTTCAAACATTACACATTGAAAGCACCGACGAAGAACCGGATAATTCTG
CGATCGTTGCAAATCCCGGGCTTCGATTTTTTGGCACGCTTTGCGTTCTA
GAAAAGGGCAGAAGATATCTGGCAAGAGTGCTTGACATTCTTGACATATC
GGAAAGAATTCGCGTTATACCGTTTGTGTTCGAGAGCCTTGGGGCCATGA
TATATTCTCTCCAACGCTCTCGACGCTCTGCTTTGTCAGGGGAAGGCGAT
ATTGTAGCCAAATCTCTTCAAACAATACGTGACTCGCACACGTCCGCATT
CGATTGCATTACAATGCTGAATTCATTCAGCTCAACCCATTCTGCTCGTC
CGGATGCCTTCCTGACTACATTTCGAAGCGCAACCGGTGCGAAACTTATG
TATTGTTGTATGCAAAGGATATCTGCAGGCTTGTACAAAAAGGAGATAGA
TAAGGAAGACGTGAGTCGAGCCGGGGTTGGTAAGCTCGCGAAAGTGTTTA
CTGAAATGCTACAACGCATATTTGATAAGGCAGAGCTGGTTAACAGAGCG
TGGGAAGTGACTGCAAGTTTCGATAGCATTCTAGCAGGCGAGGCGAGATC
ATTGCTTCGCGCAGAGCTCAATCGATTGTTGCGCAGTGGTGCAGCTCCCC
CACCCCCAGAAGGATAG

Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:49842..51608-

>Gcaud7539.t2 ID=Gcaud7539.t2|Name=Gcaud7539.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1767bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:49842..51608- (Gracilaria caudata M_176_S67 male)
CTGAGAGAAGCAATTGCAGCCCAGAACGCAGGTGTTGTCTTTGACAGGGC
CAAGTTTGATGAACATCAAACCGCTGCCCGACAACGGATACTCAGTGACT
TTTACACTCGTGTCAATCAGATTCGCTATCTTGCTTGGCTCCAGTCGCGT
CAGCTAGGTCAACGCAACGCAGCACTATCGACGCAAAGCCAAAGTGCTAC
GCATGATGACCTGGCGACGTCTTTTGCTTTTCAAACCCAAAGTCAGGAGC
GTGCCTTGGAGAGCGCGCTCAGACCTGGTCTGTTTGGCAATGGTCACGGG
CAGCCTGTCATCAATCGTTCCGGTTCAAACGCAGATTATGCTATGAACGG
CAGTACGCGAATTCTTTCTTCTCTTCAAAACAAGGGAGAGTCAAACACAT
CACGTGATCCTGTATATGAAGTAGTTGACGCACGGGACTTGGAAAGCCGC
CTTTTGGAGGTGAACAAGGATAAGCCTCCGAGAGCGAAACATGATCGAAA
TTTGGACAACAGAGCCGTCGACGGAAGGGCAGAAGCTAGAACGCATGGCA
AGAAGGCACGTCGTCTTGAATCTATGACCGACAAGGATCAAGAGCTGGTC
TTCAGGGTCCACTTGAGACAGGTAGAATCGGCAGTTACATACAAGGATGA
TTATTATAGTGGTATGTATCGCAAGAATGAAAAGCTTGGGGTGGGAGACC
TTTACTCAGATCTTGCGAAGCGCGTTAATGAGATGAGACTAAGAAACCGC
ATGAGAGGGACAAGCGGCCGTCCATACAGGAGTCGTCGATCGAAACGTGT
CCTGCAACCAAATGAAAACCAGTTATCTTCCTCTCCACAGTCTATTGAGT
CTTCAATGAACGCTCTAGCAACTGCACTTGGTTCAGTTCAAACTTGGAAC
CCCAGGGCCCCAAGAAGGGTTATGGACTTCAGCTCGATTGAACGCAAAAC
TGGCAAAGGGTCGGAATCGAAACTGCTCCGTGACGACGAGAGAGTGAAAG
TTCGACATGAGATTGAGAGAGGTTATGACATCATGGCTGTCATTCATGAC
ATCGTTAGGGGGGAAAGCTCGGAAGTGCTAGAAGATCAGATTCAGAATCT
TCTTCAAACATTACACATTGAAAGCACCGACGAAGAACCGGATAATTCTG
CGATCGTTGCAAATCCCGGGCTTCGATTTTTTGGCACGCTTTGCGTTCTA
GAAAAGGGCAGAAGATATCTGGCAAGAGTGCTTGACATTCTTGACATATC
GGAAAGAATTCGCGTTATACCGTTTGTGTTCGAGAGCCTTGGGGCCATGA
TATATTCTCTCCAACGCTCTCGACGCTCTGCTTTGTCAGGGGAAGGCGAT
ATTGTAGCCAAATCTCTTCAAACAATACGTGACTCGCACACGTCCGCATT
CGATTGCATTACAATGCTGAATTCATTCAGCTCAACCCATTCTGCTCGTC
CGGATGCCTTCCTGACTACATTTCGAAGCGCAACCGGTGCGAAACTTATG
TATTGTTGTATGCAAAGGATATCTGCAGGCTTGTACAAAAAGGAGATAGA
TAAGGAAGACGTGAGTCGAGCCGGGGTTGGTAAGCTCGCGAAAGTGTTTA
CTGAAATGCTACAACGCATATTTGATAAGGCAGAGCTGGTTAACAGAGCG
TGGGAAGTGACTGCAAGTTTCGATAGCATTCTAGCAGGCGAGGCGAGATC
ATTGCTTCGCGCAGAGCTCAATCGATTGTTGCGCAGTGGTGCAGCTCCCC
CACCCCCAGAAGGATAG