Gcaud7518.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7518.t1
Unique NameGcaud7518.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_51_length_65224_cov_4.623524contigNODE_51_length_65224_cov_4.623524:1927..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD33288
PFAMsAdap_comp_sub,Clat_adaptor_s
Max annot lvl2759|Eukaryota
KEGG koko:K12393
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0000323,GO:0001775,GO:0002090,GO:0002092,GO:0002119,GO:0002164,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009605,GO:0009628,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0021700,GO:0022607,GO:0030030,GO:0030031,GO:0030100,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030141,GO:0030154,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030667,GO:0030669,GO:0031090,GO:0031323,GO:0031325,GO:0031410,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033218,GO:0033365,GO:0034613,GO:0035579,GO:0035646,GO:0036230,GO:0040025,GO:0042119,GO:0042277,GO:0042581,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043473,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044782,GO:0045055,GO:0045176,GO:0045184,GO:0045321,GO:0045334,GO:0045807,GO:0046903,GO:0046907,GO:0048002,GO:0048066,GO:0048259,GO:0048260,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0050690,GO:0050750,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060341,GO:0060627,GO:0061512,GO:0065003,GO:0065007,GO:0070325,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0097499,GO:0097500,GO:0097708,GO:0098588,GO:0098693,GO:0098791,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099503,GO:0120031,GO:0120036,GO:1900242,GO:1900244,GO:1903421,GO:1903423,GO:1903441,GO:1990778
Evalue3.72e-163
EggNOG OGsKOG0937@1|root,KOG0937@2759|Eukaryota
Descriptionvesicle-mediated transport
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7518Gcaud7518Gracilaria caudata M_176_S67 malegeneNODE_51_length_65224_cov_4.623524 1927..2982 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7518.t1.stop1Gcaud7518.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_51_length_65224_cov_4.623524 1927..1929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7518.t1.CDS1Gcaud7518.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_51_length_65224_cov_4.623524 1927..2982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7518.t1.exon1Gcaud7518.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_51_length_65224_cov_4.623524 1927..2982 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7518.t1.start1Gcaud7518.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_51_length_65224_cov_4.623524 2980..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7518.t1Gcaud7518.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_51_length_65224_cov_4.623524 1927..2982 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7518.t1 ID=Gcaud7518.t1|Name=Gcaud7518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=352bp
MILAFLYKLVQVFTEYFRDVHEESIRDNFVVIYELLDEMMDFGFPQISES
KILRKFITQDYSVSESIGALPVAATNAVSWRSEGIKHSRNEVFLDVIEKV
NILVSGSGHLLRSEIVGKLIMKSYLSGMPNLKLGLNDRLQFEANAARGGP
ERKGKSVDLEDIKFHQCVRLAKFENDRTISFIPPDGTFELMSYRLNTQVK
PPIWVDAVIEQRPTRVDYIVKARTQLKPRAIANNVKIAIPVLPDVDTPNF
KCTSGRAKYAPEKDAVVWSIKQFKAGREAEMRGHFSLPSIGKAAERENST
KRPICVEFEVPYFTISGLQVRFLKVVEKSGYQAAPWVRYKMIAGDYQIRM
T*
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spliced messenger RNA

>Gcaud7518.t1 ID=Gcaud7518.t1|Name=Gcaud7518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:1927..2982- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCTAGCATTTCTATACAAGCTAGTTCAGGTGTTCACGGAGTACTT
TCGGGATGTTCACGAAGAATCAATACGAGACAATTTCGTCGTGATCTACG
AGCTCCTGGACGAAATGATGGACTTCGGCTTTCCTCAAATATCTGAATCA
AAAATCTTGCGGAAGTTTATCACACAGGACTACAGTGTTTCGGAGTCGAT
CGGTGCGTTACCTGTTGCTGCAACTAATGCGGTGTCGTGGAGGAGTGAGG
GGATCAAGCACTCTAGAAACGAAGTGTTCCTCGATGTAATTGAGAAGGTA
AACATTCTCGTTTCGGGATCGGGACACCTACTGCGCTCGGAAATCGTGGG
AAAGCTAATCATGAAATCTTATCTAAGCGGAATGCCTAACTTAAAGCTCG
GCCTGAACGACAGGTTGCAGTTTGAGGCGAACGCCGCTAGAGGTGGTCCT
GAAAGGAAGGGAAAGTCCGTGGACTTGGAGGATATCAAGTTTCACCAGTG
TGTGCGACTTGCTAAGTTCGAAAACGATCGTACAATTTCATTTATACCGC
CGGATGGCACCTTTGAGCTGATGAGCTATCGTCTGAACACACAGGTAAAA
CCGCCTATTTGGGTCGATGCTGTTATTGAACAAAGACCTACCCGGGTGGA
CTACATCGTGAAAGCGCGGACACAGCTAAAACCTCGTGCTATAGCAAATA
ATGTGAAGATTGCAATCCCAGTGCTTCCAGACGTAGATACCCCAAACTTC
AAATGCACTTCTGGAAGAGCAAAGTACGCACCTGAAAAAGACGCCGTCGT
TTGGTCAATTAAACAGTTCAAGGCAGGAAGAGAAGCCGAAATGCGCGGAC
ATTTCTCACTACCCAGCATTGGGAAAGCAGCAGAACGAGAAAATTCGACC
AAGCGACCAATTTGTGTTGAGTTTGAAGTACCATACTTCACAATTTCCGG
TTTGCAAGTCCGATTCTTGAAAGTAGTCGAGAAATCTGGGTATCAAGCCG
CACCTTGGGTTAGATACAAAATGATAGCTGGTGATTATCAGATTCGCATG
ACATAG
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protein sequence of Gcaud7518.t1

>Gcaud7518.t1 ID=Gcaud7518.t1|Name=Gcaud7518.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=352bp
MILAFLYKLVQVFTEYFRDVHEESIRDNFVVIYELLDEMMDFGFPQISES
KILRKFITQDYSVSESIGALPVAATNAVSWRSEGIKHSRNEVFLDVIEKV
NILVSGSGHLLRSEIVGKLIMKSYLSGMPNLKLGLNDRLQFEANAARGGP
ERKGKSVDLEDIKFHQCVRLAKFENDRTISFIPPDGTFELMSYRLNTQVK
PPIWVDAVIEQRPTRVDYIVKARTQLKPRAIANNVKIAIPVLPDVDTPNF
KCTSGRAKYAPEKDAVVWSIKQFKAGREAEMRGHFSLPSIGKAAERENST
KRPICVEFEVPYFTISGLQVRFLKVVEKSGYQAAPWVRYKMIAGDYQIRM
T*
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mRNA from alignment at NODE_51_length_65224_cov_4.623524:1927..2982-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7518.t1 ID=Gcaud7518.t1|Name=Gcaud7518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:1927..2982- (Gracilaria caudata M_176_S67 male)
ATGATTCTAGCATTTCTATACAAGCTAGTTCAGGTGTTCACGGAGTACTT
TCGGGATGTTCACGAAGAATCAATACGAGACAATTTCGTCGTGATCTACG
AGCTCCTGGACGAAATGATGGACTTCGGCTTTCCTCAAATATCTGAATCA
AAAATCTTGCGGAAGTTTATCACACAGGACTACAGTGTTTCGGAGTCGAT
CGGTGCGTTACCTGTTGCTGCAACTAATGCGGTGTCGTGGAGGAGTGAGG
GGATCAAGCACTCTAGAAACGAAGTGTTCCTCGATGTAATTGAGAAGGTA
AACATTCTCGTTTCGGGATCGGGACACCTACTGCGCTCGGAAATCGTGGG
AAAGCTAATCATGAAATCTTATCTAAGCGGAATGCCTAACTTAAAGCTCG
GCCTGAACGACAGGTTGCAGTTTGAGGCGAACGCCGCTAGAGGTGGTCCT
GAAAGGAAGGGAAAGTCCGTGGACTTGGAGGATATCAAGTTTCACCAGTG
TGTGCGACTTGCTAAGTTCGAAAACGATCGTACAATTTCATTTATACCGC
CGGATGGCACCTTTGAGCTGATGAGCTATCGTCTGAACACACAGGTAAAA
CCGCCTATTTGGGTCGATGCTGTTATTGAACAAAGACCTACCCGGGTGGA
CTACATCGTGAAAGCGCGGACACAGCTAAAACCTCGTGCTATAGCAAATA
ATGTGAAGATTGCAATCCCAGTGCTTCCAGACGTAGATACCCCAAACTTC
AAATGCACTTCTGGAAGAGCAAAGTACGCACCTGAAAAAGACGCCGTCGT
TTGGTCAATTAAACAGTTCAAGGCAGGAAGAGAAGCCGAAATGCGCGGAC
ATTTCTCACTACCCAGCATTGGGAAAGCAGCAGAACGAGAAAATTCGACC
AAGCGACCAATTTGTGTTGAGTTTGAAGTACCATACTTCACAATTTCCGG
TTTGCAAGTCCGATTCTTGAAAGTAGTCGAGAAATCTGGGTATCAAGCCG
CACCTTGGGTTAGATACAAAATGATAGCTGGTGATTATCAGATTCGCATG
ACATAG
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Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:1927..2982-

>Gcaud7518.t1 ID=Gcaud7518.t1|Name=Gcaud7518.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1056bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:1927..2982- (Gracilaria caudata M_176_S67 male)
ATGATTCTAGCATTTCTATACAAGCTAGTTCAGGTGTTCACGGAGTACTT
TCGGGATGTTCACGAAGAATCAATACGAGACAATTTCGTCGTGATCTACG
AGCTCCTGGACGAAATGATGGACTTCGGCTTTCCTCAAATATCTGAATCA
AAAATCTTGCGGAAGTTTATCACACAGGACTACAGTGTTTCGGAGTCGAT
CGGTGCGTTACCTGTTGCTGCAACTAATGCGGTGTCGTGGAGGAGTGAGG
GGATCAAGCACTCTAGAAACGAAGTGTTCCTCGATGTAATTGAGAAGGTA
AACATTCTCGTTTCGGGATCGGGACACCTACTGCGCTCGGAAATCGTGGG
AAAGCTAATCATGAAATCTTATCTAAGCGGAATGCCTAACTTAAAGCTCG
GCCTGAACGACAGGTTGCAGTTTGAGGCGAACGCCGCTAGAGGTGGTCCT
GAAAGGAAGGGAAAGTCCGTGGACTTGGAGGATATCAAGTTTCACCAGTG
TGTGCGACTTGCTAAGTTCGAAAACGATCGTACAATTTCATTTATACCGC
CGGATGGCACCTTTGAGCTGATGAGCTATCGTCTGAACACACAGGTAAAA
CCGCCTATTTGGGTCGATGCTGTTATTGAACAAAGACCTACCCGGGTGGA
CTACATCGTGAAAGCGCGGACACAGCTAAAACCTCGTGCTATAGCAAATA
ATGTGAAGATTGCAATCCCAGTGCTTCCAGACGTAGATACCCCAAACTTC
AAATGCACTTCTGGAAGAGCAAAGTACGCACCTGAAAAAGACGCCGTCGT
TTGGTCAATTAAACAGTTCAAGGCAGGAAGAGAAGCCGAAATGCGCGGAC
ATTTCTCACTACCCAGCATTGGGAAAGCAGCAGAACGAGAAAATTCGACC
AAGCGACCAATTTGTGTTGAGTTTGAAGTACCATACTTCACAATTTCCGG
TTTGCAAGTCCGATTCTTGAAAGTAGTCGAGAAATCTGGGTATCAAGCCG
CACCTTGGGTTAGATACAAAATGATAGCTGGTGATTATCAGATTCGCATG
ACATAG
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