Gcaud7516.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7516.t1
Unique Name	Gcaud7516.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	416

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4699_length_2062_cov_3.538305	contig	NODE_4699_length_2062_cov_3.538305:339..1586 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004993625.1
PFAMs	Octopine_DH
Max annot lvl	33154\|Opisthokonta
Evalue	1.38e-59
EggNOG OGs	2948S@1\|root,2RB5S@2759\|Eukaryota,3A0B5@33154\|Opisthokonta
Description	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7516	Gcaud7516	Gracilaria caudata M_176_S67 male	gene	NODE_4699_length_2062_cov_3.538305 339..1586 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7516.t1.start1	Gcaud7516.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4699_length_2062_cov_3.538305 339..341 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7516.t1.CDS1	Gcaud7516.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4699_length_2062_cov_3.538305 339..1586 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7516.t1.exon1	Gcaud7516.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4699_length_2062_cov_3.538305 339..1586 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7516.t1.stop1	Gcaud7516.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4699_length_2062_cov_3.538305 1584..1586 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7516.t1	Gcaud7516.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4699_length_2062_cov_3.538305 339..1586 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4699_length_2062_cov_3.538305:339..1586+
coding sequence from alignment at NODE_4699_length_2062_cov_3.538305:339..1586+

mRNA sequence

>Gcaud7516.t1 ID=Gcaud7516.t1|Name=Gcaud7516.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=416bp
MWKAHQIKQICVVGGGNAAQVLGALLGDARRHGSVVRVSILAPFGDESER
LFQNASKNGGITLENPDGSTTTGMPDVITDDPAQALKNTQIVLLPLPTFA
IPPMLKLIAPHLEKGTWVGALPAQGGFQWMAANILDTSEQGKGIKLFGLD
KLPYNCRTKEYGKLIKVFGYKEDLALSSVPNKLGLATTMATTISEVIPKL
NLYTAPNFLVLTLATSNQCIHPARMYGLFSKRTEIDRVPLFYEEMDEFSA
NLIHKVSEEMLAIARAVEAKSKQLKPEMDLSGVLSIEDSTLKVYEVADKS
SLKRIFQTCAGFEGIGTPLKKGEVRNGVQMYEVDWKCRYFTEDVPALCVL
RGLAELLAVRTDTIDMLITWAQRHMDGGYQFITPDGKLNTDKQRLMYTPQ
YWGIHSAEALVRFHA*

spliced messenger RNA

>Gcaud7516.t1 ID=Gcaud7516.t1|Name=Gcaud7516.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at NODE_4699_length_2062_cov_3.538305:339..1586+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAAGGCACATCAAATCAAACAGATCTGTGTGGTGGGTGGTGGAAA
TGCGGCGCAGGTGTTGGGTGCGTTGTTAGGCGATGCTCGTCGCCATGGCT
CCGTGGTGCGTGTATCCATTCTGGCGCCGTTTGGTGATGAGAGCGAGCGT
TTGTTCCAGAACGCCTCGAAGAACGGCGGCATCACGCTGGAGAATCCGGA
TGGATCCACCACCACGGGTATGCCCGACGTGATCACGGATGATCCGGCAC
AGGCGCTCAAGAACACGCAGATCGTGTTGTTGCCGCTGCCCACGTTCGCC
ATTCCGCCGATGCTCAAGCTCATTGCGCCGCATTTGGAGAAGGGCACGTG
GGTGGGTGCGCTGCCGGCGCAGGGAGGCTTCCAGTGGATGGCGGCCAACA
TTCTCGACACCAGTGAACAGGGCAAGGGCATCAAGCTGTTTGGGCTGGAC
AAGCTGCCGTACAACTGCCGTACCAAGGAGTATGGAAAGCTTATCAAGGT
GTTTGGATACAAGGAGGATCTGGCGCTGTCGTCCGTGCCCAACAAACTGG
GCTTGGCCACCACCATGGCCACTACCATATCGGAGGTGATCCCCAAATTG
AATCTGTACACAGCGCCCAACTTTTTGGTGCTCACGCTGGCCACAAGTAA
TCAATGCATTCACCCGGCTCGCATGTACGGGCTGTTCTCAAAACGCACCG
AGATTGACCGTGTGCCGCTGTTCTACGAGGAGATGGACGAGTTCTCGGCC
AACCTCATCCACAAGGTGTCGGAGGAGATGTTGGCCATTGCGCGCGCGGT
GGAGGCCAAGTCAAAACAGCTCAAGCCCGAAATGGATCTGTCGGGCGTGC
TGTCCATCGAGGACTCCACGCTCAAGGTGTACGAGGTGGCGGACAAATCG
TCGCTCAAACGCATCTTCCAGACGTGCGCGGGCTTTGAGGGCATCGGCAC
GCCGCTGAAGAAGGGCGAGGTGAGGAACGGCGTGCAGATGTACGAGGTGG
ACTGGAAGTGCCGCTACTTCACGGAGGACGTGCCGGCGCTGTGCGTGCTG
CGCGGGCTGGCGGAGCTGCTGGCGGTGAGGACGGACACCATCGACATGCT
CATCACGTGGGCGCAGCGCCACATGGACGGCGGCTACCAGTTCATCACGC
CGGACGGCAAGCTCAACACGGACAAGCAGAGGCTCATGTACACGCCGCAG
TACTGGGGCATCCACAGCGCCGAGGCGCTGGTGCGCTTCCACGCGTGA

protein sequence of Gcaud7516.t1

>Gcaud7516.t1 ID=Gcaud7516.t1|Name=Gcaud7516.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=416bp
MWKAHQIKQICVVGGGNAAQVLGALLGDARRHGSVVRVSILAPFGDESER
LFQNASKNGGITLENPDGSTTTGMPDVITDDPAQALKNTQIVLLPLPTFA
IPPMLKLIAPHLEKGTWVGALPAQGGFQWMAANILDTSEQGKGIKLFGLD
KLPYNCRTKEYGKLIKVFGYKEDLALSSVPNKLGLATTMATTISEVIPKL
NLYTAPNFLVLTLATSNQCIHPARMYGLFSKRTEIDRVPLFYEEMDEFSA
NLIHKVSEEMLAIARAVEAKSKQLKPEMDLSGVLSIEDSTLKVYEVADKS
SLKRIFQTCAGFEGIGTPLKKGEVRNGVQMYEVDWKCRYFTEDVPALCVL
RGLAELLAVRTDTIDMLITWAQRHMDGGYQFITPDGKLNTDKQRLMYTPQ
YWGIHSAEALVRFHA*

mRNA from alignment at NODE_4699_length_2062_cov_3.538305:339..1586+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7516.t1 ID=Gcaud7516.t1|Name=Gcaud7516.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at NODE_4699_length_2062_cov_3.538305:339..1586+ (Gracilaria caudata M_176_S67 male)
ATGTGGAAGGCACATCAAATCAAACAGATCTGTGTGGTGGGTGGTGGAAA
TGCGGCGCAGGTGTTGGGTGCGTTGTTAGGCGATGCTCGTCGCCATGGCT
CCGTGGTGCGTGTATCCATTCTGGCGCCGTTTGGTGATGAGAGCGAGCGT
TTGTTCCAGAACGCCTCGAAGAACGGCGGCATCACGCTGGAGAATCCGGA
TGGATCCACCACCACGGGTATGCCCGACGTGATCACGGATGATCCGGCAC
AGGCGCTCAAGAACACGCAGATCGTGTTGTTGCCGCTGCCCACGTTCGCC
ATTCCGCCGATGCTCAAGCTCATTGCGCCGCATTTGGAGAAGGGCACGTG
GGTGGGTGCGCTGCCGGCGCAGGGAGGCTTCCAGTGGATGGCGGCCAACA
TTCTCGACACCAGTGAACAGGGCAAGGGCATCAAGCTGTTTGGGCTGGAC
AAGCTGCCGTACAACTGCCGTACCAAGGAGTATGGAAAGCTTATCAAGGT
GTTTGGATACAAGGAGGATCTGGCGCTGTCGTCCGTGCCCAACAAACTGG
GCTTGGCCACCACCATGGCCACTACCATATCGGAGGTGATCCCCAAATTG
AATCTGTACACAGCGCCCAACTTTTTGGTGCTCACGCTGGCCACAAGTAA
TCAATGCATTCACCCGGCTCGCATGTACGGGCTGTTCTCAAAACGCACCG
AGATTGACCGTGTGCCGCTGTTCTACGAGGAGATGGACGAGTTCTCGGCC
AACCTCATCCACAAGGTGTCGGAGGAGATGTTGGCCATTGCGCGCGCGGT
GGAGGCCAAGTCAAAACAGCTCAAGCCCGAAATGGATCTGTCGGGCGTGC
TGTCCATCGAGGACTCCACGCTCAAGGTGTACGAGGTGGCGGACAAATCG
TCGCTCAAACGCATCTTCCAGACGTGCGCGGGCTTTGAGGGCATCGGCAC
GCCGCTGAAGAAGGGCGAGGTGAGGAACGGCGTGCAGATGTACGAGGTGG
ACTGGAAGTGCCGCTACTTCACGGAGGACGTGCCGGCGCTGTGCGTGCTG
CGCGGGCTGGCGGAGCTGCTGGCGGTGAGGACGGACACCATCGACATGCT
CATCACGTGGGCGCAGCGCCACATGGACGGCGGCTACCAGTTCATCACGC
CGGACGGCAAGCTCAACACGGACAAGCAGAGGCTCATGTACACGCCGCAG
TACTGGGGCATCCACAGCGCCGAGGCGCTGGTGCGCTTCCACGCGTGA

Coding sequence (CDS) from alignment at NODE_4699_length_2062_cov_3.538305:339..1586+

>Gcaud7516.t1 ID=Gcaud7516.t1|Name=Gcaud7516.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1248bp|location=Sequence derived from alignment at NODE_4699_length_2062_cov_3.538305:339..1586+ (Gracilaria caudata M_176_S67 male)
ATGTGGAAGGCACATCAAATCAAACAGATCTGTGTGGTGGGTGGTGGAAA
TGCGGCGCAGGTGTTGGGTGCGTTGTTAGGCGATGCTCGTCGCCATGGCT
CCGTGGTGCGTGTATCCATTCTGGCGCCGTTTGGTGATGAGAGCGAGCGT
TTGTTCCAGAACGCCTCGAAGAACGGCGGCATCACGCTGGAGAATCCGGA
TGGATCCACCACCACGGGTATGCCCGACGTGATCACGGATGATCCGGCAC
AGGCGCTCAAGAACACGCAGATCGTGTTGTTGCCGCTGCCCACGTTCGCC
ATTCCGCCGATGCTCAAGCTCATTGCGCCGCATTTGGAGAAGGGCACGTG
GGTGGGTGCGCTGCCGGCGCAGGGAGGCTTCCAGTGGATGGCGGCCAACA
TTCTCGACACCAGTGAACAGGGCAAGGGCATCAAGCTGTTTGGGCTGGAC
AAGCTGCCGTACAACTGCCGTACCAAGGAGTATGGAAAGCTTATCAAGGT
GTTTGGATACAAGGAGGATCTGGCGCTGTCGTCCGTGCCCAACAAACTGG
GCTTGGCCACCACCATGGCCACTACCATATCGGAGGTGATCCCCAAATTG
AATCTGTACACAGCGCCCAACTTTTTGGTGCTCACGCTGGCCACAAGTAA
TCAATGCATTCACCCGGCTCGCATGTACGGGCTGTTCTCAAAACGCACCG
AGATTGACCGTGTGCCGCTGTTCTACGAGGAGATGGACGAGTTCTCGGCC
AACCTCATCCACAAGGTGTCGGAGGAGATGTTGGCCATTGCGCGCGCGGT
GGAGGCCAAGTCAAAACAGCTCAAGCCCGAAATGGATCTGTCGGGCGTGC
TGTCCATCGAGGACTCCACGCTCAAGGTGTACGAGGTGGCGGACAAATCG
TCGCTCAAACGCATCTTCCAGACGTGCGCGGGCTTTGAGGGCATCGGCAC
GCCGCTGAAGAAGGGCGAGGTGAGGAACGGCGTGCAGATGTACGAGGTGG
ACTGGAAGTGCCGCTACTTCACGGAGGACGTGCCGGCGCTGTGCGTGCTG
CGCGGGCTGGCGGAGCTGCTGGCGGTGAGGACGGACACCATCGACATGCT
CATCACGTGGGCGCAGCGCCACATGGACGGCGGCTACCAGTTCATCACGC
CGGACGGCAAGCTCAACACGGACAAGCAGAGGCTCATGTACACGCCGCAG
TACTGGGGCATCCACAGCGCCGAGGCGCTGGTGCGCTTCCACGCGTGA