Gcaud751.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud751.t1
Unique Name	Gcaud751.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4329_length_2365_cov_4.150836	contig	NODE_4329_length_2365_cov_4.150836:10..1185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud751	Gcaud751	Gracilaria caudata M_176_S67 male	gene	NODE_4329_length_2365_cov_4.150836 10..1185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud751.t1.start1	Gcaud751.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4329_length_2365_cov_4.150836 10..12 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud751.t1.CDS1	Gcaud751.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4329_length_2365_cov_4.150836 10..1185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud751.t1.exon1	Gcaud751.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4329_length_2365_cov_4.150836 10..1185 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud751.t1.stop1	Gcaud751.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4329_length_2365_cov_4.150836 1183..1185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud751.t1	Gcaud751.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4329_length_2365_cov_4.150836 10..1185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4329_length_2365_cov_4.150836:10..1185+
coding sequence from alignment at NODE_4329_length_2365_cov_4.150836:10..1185+

mRNA sequence

>Gcaud751.t1 ID=Gcaud751.t1|Name=Gcaud751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=392bp
MGCCLSSDTGDNTEHTGAINVRPTVHSDAGVPNSRQGQQFVIIGGSHGRN
DGTSHSTSRHSTSGHSIRTHSTDDGDGESDHSRIDDFEHSASRSDEDDEN
EAEASKDIETQDDNIVDDEVEDEPNEDASVGDDGGDDEIVDQGGEDACVE
DDEVGDDGGEDLSPEDNEVVVEDGEAGYGEDGGDDELVDEGGEGGCDGGE
GKRRDDGGEEVPPEGNEVVDEDGETGYGEDGGNDLEWVADEPNKDASVGE
DGGDDEIVNQGGEDACVAEDEVGDGGGEDLSPEGNEVVVEDGEAGYGEDG
GDDEIVDEGVEGGCDGGEGERRDNGGEEVPSEGNEVVDEDSETGYGEDGR
NDLEWVADEFSGGVDENDVVDGEVEVDDVEYGNDEVGEFEE*

spliced messenger RNA

>Gcaud751.t1 ID=Gcaud751.t1|Name=Gcaud751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at NODE_4329_length_2365_cov_4.150836:10..1185+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTGCTGCCTGAGCTCagataccggtgataacacggaacacacagg
cgccataaacgtaagaccaacagTTCACTCGGACGCTGGCGTCCCAAATT
CTCGTCAAGGTCAGCAATTCGTCATCATTGGAGGAAGCCATGGTAGGAAT
GACGGTACTAGCCATAGCACTAGTAGACATAGCACTAGTGGACACAGCAT
TAGAACCCATAGCACTGATGATGGAGATGGGGAGAGTGATCACAGCAGAA
TCGATGATTTCGAACACAGTGCCAGCAGAAGTGACGAAGATGATGAAAAT
GAAGCAGAAGCCAGTAAAGATATAGAAACCCAAGACGACAATATTGTTGA
TGATGAAGTCGAAGATGAACCCAACGAAGACGCGAGTGTTGGAGACGATG
GAGGAGATGATGAAATTGTTGACCAAGGAGGCGAAGATGCGTGTGTTGAA
GACGATGAAGTTGGAGATGATGGCGGTGAAGATTTGTCCCCTGAAGATAA
TGAAGTTGTGGTCGAAGATGGCGAAGCTGGATATGGCGAGGATGGCGGAG
ATGATGAACTTGTTGACGAAGGAGGTGAAGGTGGCTGTGATGGAGGCGAA
GGCAAAAGAAGAGACGATGGGGGTGAAGAAGTGCCTCCTGAAGGTAATGA
AGTTGTGGACGAAGACGGCGAAACTGGATACGGCGAAGATGGAGGTAACG
ATCTCGAATGGGTAGCTGATGAACCCAACAAAGACGCGAGTGTTGGGGAA
GATGGAGGAGATGATGAAATTGTTAACCAAGGAGGTGAAGATGCGTGTGT
TGCAGAGGATGAAGTTGGAGATGGTGGCGGTGAAGATTTGTCCCCTGAAG
GTAATGAAGTTGTGGTCGAAGATGGCGAAGCTGGATATGGCGAGGATGGC
GGAGATGATGAAATTGTTGACGAAGGAGTTGAAGGTGGCTGCGATGGAGG
CGAAGGAGAAAGAAGAGACAATGGGGGTGAAGAAGTGCCTTCTGAAGGTA
ATGAGGTTGTGGACGAAGACAGCGAAACTGGATACGGGGAAGATGGACGT
AACGATCTCGAATGGGTAGCTGATGAATTTAGCGGAGGTGTCGATGAGAA
CGATGTTGTTGATGGAGAAGTGGAGGTTGACGATGTGGAGTACGGAAATG
ATGAAGTTGGAGAGTTCGAAGAATGA

protein sequence of Gcaud751.t1

>Gcaud751.t1 ID=Gcaud751.t1|Name=Gcaud751.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=392bp
MGCCLSSDTGDNTEHTGAINVRPTVHSDAGVPNSRQGQQFVIIGGSHGRN
DGTSHSTSRHSTSGHSIRTHSTDDGDGESDHSRIDDFEHSASRSDEDDEN
EAEASKDIETQDDNIVDDEVEDEPNEDASVGDDGGDDEIVDQGGEDACVE
DDEVGDDGGEDLSPEDNEVVVEDGEAGYGEDGGDDELVDEGGEGGCDGGE
GKRRDDGGEEVPPEGNEVVDEDGETGYGEDGGNDLEWVADEPNKDASVGE
DGGDDEIVNQGGEDACVAEDEVGDGGGEDLSPEGNEVVVEDGEAGYGEDG
GDDEIVDEGVEGGCDGGEGERRDNGGEEVPSEGNEVVDEDSETGYGEDGR
NDLEWVADEFSGGVDENDVVDGEVEVDDVEYGNDEVGEFEE*

mRNA from alignment at NODE_4329_length_2365_cov_4.150836:10..1185+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud751.t1 ID=Gcaud751.t1|Name=Gcaud751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at NODE_4329_length_2365_cov_4.150836:10..1185+ (Gracilaria caudata M_176_S67 male)
ATGGGGTGCTGCCTGAGCTCagataccggtgataacacggaacacacagg
cgccataaacgtaagaccaacagTTCACTCGGACGCTGGCGTCCCAAATT
CTCGTCAAGGTCAGCAATTCGTCATCATTGGAGGAAGCCATGGTAGGAAT
GACGGTACTAGCCATAGCACTAGTAGACATAGCACTAGTGGACACAGCAT
TAGAACCCATAGCACTGATGATGGAGATGGGGAGAGTGATCACAGCAGAA
TCGATGATTTCGAACACAGTGCCAGCAGAAGTGACGAAGATGATGAAAAT
GAAGCAGAAGCCAGTAAAGATATAGAAACCCAAGACGACAATATTGTTGA
TGATGAAGTCGAAGATGAACCCAACGAAGACGCGAGTGTTGGAGACGATG
GAGGAGATGATGAAATTGTTGACCAAGGAGGCGAAGATGCGTGTGTTGAA
GACGATGAAGTTGGAGATGATGGCGGTGAAGATTTGTCCCCTGAAGATAA
TGAAGTTGTGGTCGAAGATGGCGAAGCTGGATATGGCGAGGATGGCGGAG
ATGATGAACTTGTTGACGAAGGAGGTGAAGGTGGCTGTGATGGAGGCGAA
GGCAAAAGAAGAGACGATGGGGGTGAAGAAGTGCCTCCTGAAGGTAATGA
AGTTGTGGACGAAGACGGCGAAACTGGATACGGCGAAGATGGAGGTAACG
ATCTCGAATGGGTAGCTGATGAACCCAACAAAGACGCGAGTGTTGGGGAA
GATGGAGGAGATGATGAAATTGTTAACCAAGGAGGTGAAGATGCGTGTGT
TGCAGAGGATGAAGTTGGAGATGGTGGCGGTGAAGATTTGTCCCCTGAAG
GTAATGAAGTTGTGGTCGAAGATGGCGAAGCTGGATATGGCGAGGATGGC
GGAGATGATGAAATTGTTGACGAAGGAGTTGAAGGTGGCTGCGATGGAGG
CGAAGGAGAAAGAAGAGACAATGGGGGTGAAGAAGTGCCTTCTGAAGGTA
ATGAGGTTGTGGACGAAGACAGCGAAACTGGATACGGGGAAGATGGACGT
AACGATCTCGAATGGGTAGCTGATGAATTTAGCGGAGGTGTCGATGAGAA
CGATGTTGTTGATGGAGAAGTGGAGGTTGACGATGTGGAGTACGGAAATG
ATGAAGTTGGAGAGTTCGAAGAATGA

Coding sequence (CDS) from alignment at NODE_4329_length_2365_cov_4.150836:10..1185+

>Gcaud751.t1 ID=Gcaud751.t1|Name=Gcaud751.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1176bp|location=Sequence derived from alignment at NODE_4329_length_2365_cov_4.150836:10..1185+ (Gracilaria caudata M_176_S67 male)
ATGGGGTGCTGCCTGAGCTCagataccggtgataacacggaacacacagg
cgccataaacgtaagaccaacagTTCACTCGGACGCTGGCGTCCCAAATT
CTCGTCAAGGTCAGCAATTCGTCATCATTGGAGGAAGCCATGGTAGGAAT
GACGGTACTAGCCATAGCACTAGTAGACATAGCACTAGTGGACACAGCAT
TAGAACCCATAGCACTGATGATGGAGATGGGGAGAGTGATCACAGCAGAA
TCGATGATTTCGAACACAGTGCCAGCAGAAGTGACGAAGATGATGAAAAT
GAAGCAGAAGCCAGTAAAGATATAGAAACCCAAGACGACAATATTGTTGA
TGATGAAGTCGAAGATGAACCCAACGAAGACGCGAGTGTTGGAGACGATG
GAGGAGATGATGAAATTGTTGACCAAGGAGGCGAAGATGCGTGTGTTGAA
GACGATGAAGTTGGAGATGATGGCGGTGAAGATTTGTCCCCTGAAGATAA
TGAAGTTGTGGTCGAAGATGGCGAAGCTGGATATGGCGAGGATGGCGGAG
ATGATGAACTTGTTGACGAAGGAGGTGAAGGTGGCTGTGATGGAGGCGAA
GGCAAAAGAAGAGACGATGGGGGTGAAGAAGTGCCTCCTGAAGGTAATGA
AGTTGTGGACGAAGACGGCGAAACTGGATACGGCGAAGATGGAGGTAACG
ATCTCGAATGGGTAGCTGATGAACCCAACAAAGACGCGAGTGTTGGGGAA
GATGGAGGAGATGATGAAATTGTTAACCAAGGAGGTGAAGATGCGTGTGT
TGCAGAGGATGAAGTTGGAGATGGTGGCGGTGAAGATTTGTCCCCTGAAG
GTAATGAAGTTGTGGTCGAAGATGGCGAAGCTGGATATGGCGAGGATGGC
GGAGATGATGAAATTGTTGACGAAGGAGTTGAAGGTGGCTGCGATGGAGG
CGAAGGAGAAAGAAGAGACAATGGGGGTGAAGAAGTGCCTTCTGAAGGTA
ATGAGGTTGTGGACGAAGACAGCGAAACTGGATACGGGGAAGATGGACGT
AACGATCTCGAATGGGTAGCTGATGAATTTAGCGGAGGTGTCGATGAGAA
CGATGTTGTTGATGGAGAAGTGGAGGTTGACGATGTGGAGTACGGAAATG
ATGAAGTTGGAGAGTTCGAAGAATGA