Gcaud7497.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7497.t1
Unique NameGcaud7497.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4506_length_2215_cov_4.685970contigNODE_4506_length_2215_cov_4.685970:591..1070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7497Gcaud7497Gracilaria caudata M_176_S67 malegeneNODE_4506_length_2215_cov_4.685970 591..1070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7497.t1.CDS1Gcaud7497.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4506_length_2215_cov_4.685970 591..1070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7497.t1.exon1Gcaud7497.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4506_length_2215_cov_4.685970 591..1070 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7497.t1.start1Gcaud7497.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4506_length_2215_cov_4.685970 1068..1070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7497.t1Gcaud7497.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4506_length_2215_cov_4.685970 591..1070 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7497.t1 ID=Gcaud7497.t1|Name=Gcaud7497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp
MENVDEKIKIFNKHYVYYDRTQDRNLYMVLLPSHERTHALVEVNPDRSIQ
LPMAPTTYYFHLQMTVTDLEESIASMLGTKVRYVREIWATPREGKYVLWG
ETFDRIVVILVESVETKKSMDSREGMRWMSRNEMNSGIWVKADKELGLDL
KESVLRCMRE
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spliced messenger RNA

>Gcaud7497.t1 ID=Gcaud7497.t1|Name=Gcaud7497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_4506_length_2215_cov_4.685970:591..1070- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAATGTCGACGAAAAGATTAAGATCTTTAACAAGCACTACGTGTA
TTACGATCGGACACAAGACCGAAACCTATATATGGTGTTGCTTCCATCAC
ACGAAAGAACGCACGCACTTGTCGAAGTGAATCCGGACCGATCTATTCAG
CTACCGATGGCACCTACAACATACTACTTTCATCTGCAAATGACGGTGAC
AGACCTGGAGGAGTCGATTGCATCGATGCTTGGAACCAAAGTTAGGTATG
TGCGGGAGATATGGGCTACCCCTCGAGAAGGGAAATATGTTTTATGGGGG
GAGACATTCGACAGAATTGTGGTAATACTGGTGGAATCAGTGGAGACTAA
GAAGAGCATGGATAGCAGAGAAGGGATGAGATGGATGTCACGGAATGAAA
TGAATAGTGGAATCTGGGTGAAAGCTGACAAAGAGCTTGGGTTGGATCTA
AAAGAATCTGTACTTCGATGTATGAGGGAA
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protein sequence of Gcaud7497.t1

>Gcaud7497.t1 ID=Gcaud7497.t1|Name=Gcaud7497.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MENVDEKIKIFNKHYVYYDRTQDRNLYMVLLPSHERTHALVEVNPDRSIQ
LPMAPTTYYFHLQMTVTDLEESIASMLGTKVRYVREIWATPREGKYVLWG
ETFDRIVVILVESVETKKSMDSREGMRWMSRNEMNSGIWVKADKELGLDL
KESVLRCMRE
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mRNA from alignment at NODE_4506_length_2215_cov_4.685970:591..1070-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7497.t1 ID=Gcaud7497.t1|Name=Gcaud7497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_4506_length_2215_cov_4.685970:591..1070- (Gracilaria caudata M_176_S67 male)
ATGGAAAATGTCGACGAAAAGATTAAGATCTTTAACAAGCACTACGTGTA
TTACGATCGGACACAAGACCGAAACCTATATATGGTGTTGCTTCCATCAC
ACGAAAGAACGCACGCACTTGTCGAAGTGAATCCGGACCGATCTATTCAG
CTACCGATGGCACCTACAACATACTACTTTCATCTGCAAATGACGGTGAC
AGACCTGGAGGAGTCGATTGCATCGATGCTTGGAACCAAAGTTAGGTATG
TGCGGGAGATATGGGCTACCCCTCGAGAAGGGAAATATGTTTTATGGGGG
GAGACATTCGACAGAATTGTGGTAATACTGGTGGAATCAGTGGAGACTAA
GAAGAGCATGGATAGCAGAGAAGGGATGAGATGGATGTCACGGAATGAAA
TGAATAGTGGAATCTGGGTGAAAGCTGACAAAGAGCTTGGGTTGGATCTA
AAAGAATCTGTACTTCGATGTATGAGGGAA
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Coding sequence (CDS) from alignment at NODE_4506_length_2215_cov_4.685970:591..1070-

>Gcaud7497.t1 ID=Gcaud7497.t1|Name=Gcaud7497.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=480bp|location=Sequence derived from alignment at NODE_4506_length_2215_cov_4.685970:591..1070- (Gracilaria caudata M_176_S67 male)
ATGGAAAATGTCGACGAAAAGATTAAGATCTTTAACAAGCACTACGTGTA
TTACGATCGGACACAAGACCGAAACCTATATATGGTGTTGCTTCCATCAC
ACGAAAGAACGCACGCACTTGTCGAAGTGAATCCGGACCGATCTATTCAG
CTACCGATGGCACCTACAACATACTACTTTCATCTGCAAATGACGGTGAC
AGACCTGGAGGAGTCGATTGCATCGATGCTTGGAACCAAAGTTAGGTATG
TGCGGGAGATATGGGCTACCCCTCGAGAAGGGAAATATGTTTTATGGGGG
GAGACATTCGACAGAATTGTGGTAATACTGGTGGAATCAGTGGAGACTAA
GAAGAGCATGGATAGCAGAGAAGGGATGAGATGGATGTCACGGAATGAAA
TGAATAGTGGAATCTGGGTGAAAGCTGACAAAGAGCTTGGGTTGGATCTA
AAAGAATCTGTACTTCGATGTATGAGGGAA
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