Gcaud7471.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7471.t1
Unique Name	Gcaud7471.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	530

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_477_length_24373_cov_4.435714	contig	NODE_477_length_24373_cov_4.435714:16032..17685 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7471	Gcaud7471	Gracilaria caudata M_176_S67 male	gene	NODE_477_length_24373_cov_4.435714 16032..17685 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7471.t1	Gcaud7471.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_477_length_24373_cov_4.435714 16032..17685 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7471.t1.start1	Gcaud7471.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_477_length_24373_cov_4.435714 16032..16034 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7471.t1.CDS1	Gcaud7471.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_477_length_24373_cov_4.435714 16032..16057 +
Gcaud7471.t1.CDS2	Gcaud7471.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_477_length_24373_cov_4.435714 16122..17685 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7471.t1.exon1	Gcaud7471.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_477_length_24373_cov_4.435714 16032..16057 +
Gcaud7471.t1.exon2	Gcaud7471.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_477_length_24373_cov_4.435714 16122..17685 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7471.t1.intron1	Gcaud7471.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_477_length_24373_cov_4.435714 16058..16121 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7471.t1.stop1	Gcaud7471.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_477_length_24373_cov_4.435714 17683..17685 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_477_length_24373_cov_4.435714:16032..17685+
coding sequence from alignment at NODE_477_length_24373_cov_4.435714:16032..17685+

mRNA sequence

>Gcaud7471.t1 ID=Gcaud7471.t1|Name=Gcaud7471.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=530bp
MKGWMGGKRRHIAVRRRDPNARQREIFARRRQLARQSLPRGQKTGAQMNM
ENGPGRPPRPPASHIPRTPQAPQNALRSGTRRDPKQPFQYSKDIVMFGDA
SGLESIVPEYRHARKRFRDRAAREERESKRRREAKIEEPVDAFSSSYPSQ
DIRIFDADDEKTPLFRRRTLPHNFLNSEDTTRHRTSKHFAKETVPLPKRH
KVSTTPDLINRFSGLQFSPLRRIEGFRRVVKESSNTRGEVTKPFLRHERN
PPLPESPSDKFDEIRTGFVDDGRSLRVPQERFERPEVVSGLVPDGIDNLT
RRRISESPERVKTSPLRWKDIDLESRSQSPVLPAKHVDAFHSIENTRLES
RFPLIEAESESPPLLSPDKKEQESPVIGFRSLLAYEPITPDYFSAEVHVL
EAKMFERPDSDGRRFRVRRKLQRRDPCEEVGHGSTRERDLRTNAGIKGGN
SESEVNREMLSSTKDVKDVRLEVRTGEGKICTNDSIVAEPEKSNHGIVDV
TLIRTEQNPVHAARSKRLADDHKQASKTV*

spliced messenger RNA

>Gcaud7471.t1 ID=Gcaud7471.t1|Name=Gcaud7471.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:16032..17685+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGATGGATGGGAGGCAAGCGGCGTCATATCGCCGTGCGTCGAAG
GGACCCAAATGCTCGTCAGAGGGAGATTTTCGCTCGAAGAAGACAACTCG
CCCGGCAATCGCTACCCCGTGGTCAAAAGACTGGAGCGCAGATGAACATG
GAAAACGGTCCAGGACGTCCTCCGAGACCTCCAGCATCTCATATTCCACG
AACACCCCAAGCTCCTCAAAATGCATTACGTAGTGGGACCAGGAGAGACC
CAAAGCAACCATTTCAATACAGTAAGGACATTGTCATGTTTGGCGACGCA
TCTGGACTGGAATCCATCGTGCCGGAGTATCGGCATGCAAGAAAAAGATT
TCGTGATCGTGCAGCACGCGAAGAGCGGGAATCGAAGCGAAGAAGAGAGG
CCAAGATAGAAGAACCTGTGGATGCATTTTCCTCCAGCTACCCGTCTCAA
GACATTAGAATTTTCGATGCGGACGACGAGAAGACCCCTCTCTTTCGTCG
ACGAACGCTCCCGCATAATTTCTTGAACAGCGAGGACACCACCAGACACC
GCACATCCAAACACTTTGCTAAAGAAACTGTTCCCCTGCCAAAACGACAC
AAAGTTTCGACAACTCCGGATCTCATTAATAGGTTTTCTGGGCTTCAGTT
CAGCCCACTTCGTAGAATCGAAGGATTCCGGAGAGTTGTCAAAGAGTCGT
CCAATACTCGCGGAGAGGTGACCAAGCCTTTTCTACGACACGAGCGGAAT
CCTCCGTTACCCGAAAGTCCTTCTGACAAGTTTGACGAGATTCGTACCGG
TTTTGTAGACGATGGACGGTCTTTGAGGGTACCGCAAGAGCGCTTTGAAC
GTCCAGAAGTGGTTTCAGGTCTGGTTCCGGATGGCATTGATAACCTGACA
CGGCGACGCATATCAGAGTCCCCGGAACGTGTGAAAACTTCCCCCCTTAG
ATGGAAGGATATTGATTTGGAGTCCCGCTCCCAATCGCCCGTTCTCCCTG
CAAAGCACGTAGACGCCTTCCACAGCATTGAAAACACAAGACTGGAATCA
AGATTTCCTTTAATCGAAGCAGAATCAGAAAGTCCGCCACTGCTTTCGCC
GGATAAGAAGGAGCAAGAGAGTCCGGTCATCGGGTTTCGGTCGTTACTGG
CATATGAACCAATAACCCCTGATTATTTCAGTGCTGAAGTACATGTGCTT
GAGGCAAAGATGTTTGAAAGACCGGACAGTGATGGCAGAAGATTCAGAGT
ACGACGAAAACTGCAGCGACGAGACCCGTGTGAAGAAGTGGGACATGGGT
CAACTAGGGAAAGAGATCTGCGTACCAACGCGGGGATCAAAGGAGGGAAT
TCGGAAAGTGAGGTAAACAGGGAAATGTTGTCAAGCACAAAAGATGTGAA
AGACGTCAGACTTGAGGTGAGGACTGGGGAGGGGAAGATTTGCACAAACG
ATAGCATTGTTGCAGAGCCAGAGAAGTCAAATCATGGTATTGTCGACGTG
ACACTTATCAGGACAGAGCAGAACCCGGTTCATGCTGCAAGGAGCAAGAG
ACTTGCCGATGATCATAAGCAGGCCAGTAAAACTGTGTGA

protein sequence of Gcaud7471.t1

>Gcaud7471.t1 ID=Gcaud7471.t1|Name=Gcaud7471.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=530bp
MKGWMGGKRRHIAVRRRDPNARQREIFARRRQLARQSLPRGQKTGAQMNM
ENGPGRPPRPPASHIPRTPQAPQNALRSGTRRDPKQPFQYSKDIVMFGDA
SGLESIVPEYRHARKRFRDRAAREERESKRRREAKIEEPVDAFSSSYPSQ
DIRIFDADDEKTPLFRRRTLPHNFLNSEDTTRHRTSKHFAKETVPLPKRH
KVSTTPDLINRFSGLQFSPLRRIEGFRRVVKESSNTRGEVTKPFLRHERN
PPLPESPSDKFDEIRTGFVDDGRSLRVPQERFERPEVVSGLVPDGIDNLT
RRRISESPERVKTSPLRWKDIDLESRSQSPVLPAKHVDAFHSIENTRLES
RFPLIEAESESPPLLSPDKKEQESPVIGFRSLLAYEPITPDYFSAEVHVL
EAKMFERPDSDGRRFRVRRKLQRRDPCEEVGHGSTRERDLRTNAGIKGGN
SESEVNREMLSSTKDVKDVRLEVRTGEGKICTNDSIVAEPEKSNHGIVDV
TLIRTEQNPVHAARSKRLADDHKQASKTV*

mRNA from alignment at NODE_477_length_24373_cov_4.435714:16032..17685+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7471.t1 ID=Gcaud7471.t1|Name=Gcaud7471.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1654bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:16032..17685+ (Gracilaria caudata M_176_S67 male)
ATGAAGGGATGGATGGGAGGCAAGCGGTAAGCAAACACGCCTATTCTTTG
GACTTTCTGAAGAAAGCTAACATGAGCAAACCTGCAAAAGGCGTCATATC
GCCGTGCGTCGAAGGGACCCAAATGCTCGTCAGAGGGAGATTTTCGCTCG
AAGAAGACAACTCGCCCGGCAATCGCTACCCCGTGGTCAAAAGACTGGAG
CGCAGATGAACATGGAAAACGGTCCAGGACGTCCTCCGAGACCTCCAGCA
TCTCATATTCCACGAACACCCCAAGCTCCTCAAAATGCATTACGTAGTGG
GACCAGGAGAGACCCAAAGCAACCATTTCAATACAGTAAGGACATTGTCA
TGTTTGGCGACGCATCTGGACTGGAATCCATCGTGCCGGAGTATCGGCAT
GCAAGAAAAAGATTTCGTGATCGTGCAGCACGCGAAGAGCGGGAATCGAA
GCGAAGAAGAGAGGCCAAGATAGAAGAACCTGTGGATGCATTTTCCTCCA
GCTACCCGTCTCAAGACATTAGAATTTTCGATGCGGACGACGAGAAGACC
CCTCTCTTTCGTCGACGAACGCTCCCGCATAATTTCTTGAACAGCGAGGA
CACCACCAGACACCGCACATCCAAACACTTTGCTAAAGAAACTGTTCCCC
TGCCAAAACGACACAAAGTTTCGACAACTCCGGATCTCATTAATAGGTTT
TCTGGGCTTCAGTTCAGCCCACTTCGTAGAATCGAAGGATTCCGGAGAGT
TGTCAAAGAGTCGTCCAATACTCGCGGAGAGGTGACCAAGCCTTTTCTAC
GACACGAGCGGAATCCTCCGTTACCCGAAAGTCCTTCTGACAAGTTTGAC
GAGATTCGTACCGGTTTTGTAGACGATGGACGGTCTTTGAGGGTACCGCA
AGAGCGCTTTGAACGTCCAGAAGTGGTTTCAGGTCTGGTTCCGGATGGCA
TTGATAACCTGACACGGCGACGCATATCAGAGTCCCCGGAACGTGTGAAA
ACTTCCCCCCTTAGATGGAAGGATATTGATTTGGAGTCCCGCTCCCAATC
GCCCGTTCTCCCTGCAAAGCACGTAGACGCCTTCCACAGCATTGAAAACA
CAAGACTGGAATCAAGATTTCCTTTAATCGAAGCAGAATCAGAAAGTCCG
CCACTGCTTTCGCCGGATAAGAAGGAGCAAGAGAGTCCGGTCATCGGGTT
TCGGTCGTTACTGGCATATGAACCAATAACCCCTGATTATTTCAGTGCTG
AAGTACATGTGCTTGAGGCAAAGATGTTTGAAAGACCGGACAGTGATGGC
AGAAGATTCAGAGTACGACGAAAACTGCAGCGACGAGACCCGTGTGAAGA
AGTGGGACATGGGTCAACTAGGGAAAGAGATCTGCGTACCAACGCGGGGA
TCAAAGGAGGGAATTCGGAAAGTGAGGTAAACAGGGAAATGTTGTCAAGC
ACAAAAGATGTGAAAGACGTCAGACTTGAGGTGAGGACTGGGGAGGGGAA
GATTTGCACAAACGATAGCATTGTTGCAGAGCCAGAGAAGTCAAATCATG
GTATTGTCGACGTGACACTTATCAGGACAGAGCAGAACCCGGTTCATGCT
GCAAGGAGCAAGAGACTTGCCGATGATCATAAGCAGGCCAGTAAAACTGT
GTGA

Coding sequence (CDS) from alignment at NODE_477_length_24373_cov_4.435714:16032..17685+

>Gcaud7471.t1 ID=Gcaud7471.t1|Name=Gcaud7471.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1590bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:16032..17685+ (Gracilaria caudata M_176_S67 male)
ATGAAGGGATGGATGGGAGGCAAGCGGCGTCATATCGCCGTGCGTCGAAG
GGACCCAAATGCTCGTCAGAGGGAGATTTTCGCTCGAAGAAGACAACTCG
CCCGGCAATCGCTACCCCGTGGTCAAAAGACTGGAGCGCAGATGAACATG
GAAAACGGTCCAGGACGTCCTCCGAGACCTCCAGCATCTCATATTCCACG
AACACCCCAAGCTCCTCAAAATGCATTACGTAGTGGGACCAGGAGAGACC
CAAAGCAACCATTTCAATACAGTAAGGACATTGTCATGTTTGGCGACGCA
TCTGGACTGGAATCCATCGTGCCGGAGTATCGGCATGCAAGAAAAAGATT
TCGTGATCGTGCAGCACGCGAAGAGCGGGAATCGAAGCGAAGAAGAGAGG
CCAAGATAGAAGAACCTGTGGATGCATTTTCCTCCAGCTACCCGTCTCAA
GACATTAGAATTTTCGATGCGGACGACGAGAAGACCCCTCTCTTTCGTCG
ACGAACGCTCCCGCATAATTTCTTGAACAGCGAGGACACCACCAGACACC
GCACATCCAAACACTTTGCTAAAGAAACTGTTCCCCTGCCAAAACGACAC
AAAGTTTCGACAACTCCGGATCTCATTAATAGGTTTTCTGGGCTTCAGTT
CAGCCCACTTCGTAGAATCGAAGGATTCCGGAGAGTTGTCAAAGAGTCGT
CCAATACTCGCGGAGAGGTGACCAAGCCTTTTCTACGACACGAGCGGAAT
CCTCCGTTACCCGAAAGTCCTTCTGACAAGTTTGACGAGATTCGTACCGG
TTTTGTAGACGATGGACGGTCTTTGAGGGTACCGCAAGAGCGCTTTGAAC
GTCCAGAAGTGGTTTCAGGTCTGGTTCCGGATGGCATTGATAACCTGACA
CGGCGACGCATATCAGAGTCCCCGGAACGTGTGAAAACTTCCCCCCTTAG
ATGGAAGGATATTGATTTGGAGTCCCGCTCCCAATCGCCCGTTCTCCCTG
CAAAGCACGTAGACGCCTTCCACAGCATTGAAAACACAAGACTGGAATCA
AGATTTCCTTTAATCGAAGCAGAATCAGAAAGTCCGCCACTGCTTTCGCC
GGATAAGAAGGAGCAAGAGAGTCCGGTCATCGGGTTTCGGTCGTTACTGG
CATATGAACCAATAACCCCTGATTATTTCAGTGCTGAAGTACATGTGCTT
GAGGCAAAGATGTTTGAAAGACCGGACAGTGATGGCAGAAGATTCAGAGT
ACGACGAAAACTGCAGCGACGAGACCCGTGTGAAGAAGTGGGACATGGGT
CAACTAGGGAAAGAGATCTGCGTACCAACGCGGGGATCAAAGGAGGGAAT
TCGGAAAGTGAGGTAAACAGGGAAATGTTGTCAAGCACAAAAGATGTGAA
AGACGTCAGACTTGAGGTGAGGACTGGGGAGGGGAAGATTTGCACAAACG
ATAGCATTGTTGCAGAGCCAGAGAAGTCAAATCATGGTATTGTCGACGTG
ACACTTATCAGGACAGAGCAGAACCCGGTTCATGCTGCAAGGAGCAAGAG
ACTTGCCGATGATCATAAGCAGGCCAGTAAAACTGTGTGA