Gcaud7466.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7466.t1
Unique NameGcaud7466.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_477_length_24373_cov_4.435714contigNODE_477_length_24373_cov_4.435714:5707..6675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707798.1
PFAMsPeptidase_M24
Max annot lvl2759|Eukaryota
KEGG koko:K01265
Evalue5.31e-147
EggNOG OGsCOG0024@1|root,KOG2738@2759|Eukaryota
EC3.4.11.18
Descriptionmetalloexopeptidase activity
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7466Gcaud7466Gracilaria caudata M_176_S67 malegeneNODE_477_length_24373_cov_4.435714 5707..6675 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7466.t1.stop1Gcaud7466.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_477_length_24373_cov_4.435714 5707..5709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7466.t1.CDS1Gcaud7466.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_477_length_24373_cov_4.435714 5707..6675 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7466.t1.exon1Gcaud7466.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_477_length_24373_cov_4.435714 5707..6675 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7466.t1.start1Gcaud7466.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_477_length_24373_cov_4.435714 6673..6675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7466.t1Gcaud7466.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_477_length_24373_cov_4.435714 5707..6675 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7466.t1 ID=Gcaud7466.t1|Name=Gcaud7466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MKKQKPKTSVARGFGIERIQRFKYTGKLRPGKLSEPRLVPEHIPRPDYWQ
DGVPKAKLPRFPWELHSLTEQQIHNMRESCRVAREILDIAGQMVKPGVLT
DQIDAVVHEETVKRGAYPSPLNYNRFPKSCCTSINEVVCHGIPDTTALAD
GDIINIDVTVYYNGYHGDCSETFLVGDVDEKGKKLVRVTHECLEKAIDFC
KPGVPVKKIGAVIEEHATRHGFSVVRNFCGHGVNSVFHTTPNVMHFKNNE
PAGILKPGVTFTIEPMINEGTHRNIMWPDDWTATTLDGKRSAQFEHTLLV
TDNGVERLTAKLQSSPKYFWEQ*
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spliced messenger RNA

>Gcaud7466.t1 ID=Gcaud7466.t1|Name=Gcaud7466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:5707..6675- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGCAAAAACCAAAAACGAGCGTTGCGAGAGGATTCGGCATCGA
GCGCATACAGCGCTTCAAGTACACAGGCAAGCTGCGGCCTGGGAAGCTTT
CTGAGCCACGCCTGGTTCCTGAGCACATTCCGCGTCCTGACTACTGGCAG
GATGGTGTACCAAAGGCCAAATTGCCTCGTTTTCCGTGGGAGCTTCACAG
TCTCACAGAACAGCAGATTCACAACATGCGAGAGTCATGCCGTGTCGCTC
GCGAGATCCTTGACATCGCCGGCCAAATGGTCAAGCCAGGAGTGCTTACT
GACCAAATTGACGCTGTTGTGCACGAAGAAACAGTGAAGCGTGGCGCATA
TCCATCCCCTCTCAACTACAACAGATTCCCGAAGTCGTGTTGTACCTCCA
TAAACGAGGTTGTATGTCATGGCATTCCGGACACTACCGCACTGGCAGAC
GGCGATATCATCAACATTGATGTAACTGTATACTACAATGGCTATCACGG
CGATTGTTCCGAAACATTTCTCGTCGGAGACGTTGACGAAAAAGGGAAAA
AGCTTGTTCGAGTTACCCACGAATGCCTGGAGAAGGCCATTGACTTTTGC
AAACCCGGAGTGCCCGTCAAGAAAATTGGAGCCGTTATCGAGGAGCATGC
CACGCGACACGGTTTTTCTGTTGTGCGCAATTTCTGTGGCCACGGCGTAA
ACTCTGTGTTTCACACCACCCCGAACGTAATGCATTTCAAGAACAATGAA
CCTGCGGGCATTCTCAAACCTGGCGTTACATTCACTATTGAACCAATGAT
TAACGAAGGCACTCATCGAAACATTATGTGGCCTGATGATTGGACTGCCA
CTACACTAGACGGCAAAAGAAGCGCTCAATTTGAGCATACGCTACTGGTC
ACAGACAATGGTGTTGAACGCCTGACGGCAAAGCTACAATCTAGTCCAAA
GTATTTCTGGGAACAATAG
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protein sequence of Gcaud7466.t1

>Gcaud7466.t1 ID=Gcaud7466.t1|Name=Gcaud7466.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MKKQKPKTSVARGFGIERIQRFKYTGKLRPGKLSEPRLVPEHIPRPDYWQ
DGVPKAKLPRFPWELHSLTEQQIHNMRESCRVAREILDIAGQMVKPGVLT
DQIDAVVHEETVKRGAYPSPLNYNRFPKSCCTSINEVVCHGIPDTTALAD
GDIINIDVTVYYNGYHGDCSETFLVGDVDEKGKKLVRVTHECLEKAIDFC
KPGVPVKKIGAVIEEHATRHGFSVVRNFCGHGVNSVFHTTPNVMHFKNNE
PAGILKPGVTFTIEPMINEGTHRNIMWPDDWTATTLDGKRSAQFEHTLLV
TDNGVERLTAKLQSSPKYFWEQ*
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mRNA from alignment at NODE_477_length_24373_cov_4.435714:5707..6675-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7466.t1 ID=Gcaud7466.t1|Name=Gcaud7466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:5707..6675- (Gracilaria caudata M_176_S67 male)
ATGAAGAAGCAAAAACCAAAAACGAGCGTTGCGAGAGGATTCGGCATCGA
GCGCATACAGCGCTTCAAGTACACAGGCAAGCTGCGGCCTGGGAAGCTTT
CTGAGCCACGCCTGGTTCCTGAGCACATTCCGCGTCCTGACTACTGGCAG
GATGGTGTACCAAAGGCCAAATTGCCTCGTTTTCCGTGGGAGCTTCACAG
TCTCACAGAACAGCAGATTCACAACATGCGAGAGTCATGCCGTGTCGCTC
GCGAGATCCTTGACATCGCCGGCCAAATGGTCAAGCCAGGAGTGCTTACT
GACCAAATTGACGCTGTTGTGCACGAAGAAACAGTGAAGCGTGGCGCATA
TCCATCCCCTCTCAACTACAACAGATTCCCGAAGTCGTGTTGTACCTCCA
TAAACGAGGTTGTATGTCATGGCATTCCGGACACTACCGCACTGGCAGAC
GGCGATATCATCAACATTGATGTAACTGTATACTACAATGGCTATCACGG
CGATTGTTCCGAAACATTTCTCGTCGGAGACGTTGACGAAAAAGGGAAAA
AGCTTGTTCGAGTTACCCACGAATGCCTGGAGAAGGCCATTGACTTTTGC
AAACCCGGAGTGCCCGTCAAGAAAATTGGAGCCGTTATCGAGGAGCATGC
CACGCGACACGGTTTTTCTGTTGTGCGCAATTTCTGTGGCCACGGCGTAA
ACTCTGTGTTTCACACCACCCCGAACGTAATGCATTTCAAGAACAATGAA
CCTGCGGGCATTCTCAAACCTGGCGTTACATTCACTATTGAACCAATGAT
TAACGAAGGCACTCATCGAAACATTATGTGGCCTGATGATTGGACTGCCA
CTACACTAGACGGCAAAAGAAGCGCTCAATTTGAGCATACGCTACTGGTC
ACAGACAATGGTGTTGAACGCCTGACGGCAAAGCTACAATCTAGTCCAAA
GTATTTCTGGGAACAATAG
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Coding sequence (CDS) from alignment at NODE_477_length_24373_cov_4.435714:5707..6675-

>Gcaud7466.t1 ID=Gcaud7466.t1|Name=Gcaud7466.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:5707..6675- (Gracilaria caudata M_176_S67 male)
ATGAAGAAGCAAAAACCAAAAACGAGCGTTGCGAGAGGATTCGGCATCGA
GCGCATACAGCGCTTCAAGTACACAGGCAAGCTGCGGCCTGGGAAGCTTT
CTGAGCCACGCCTGGTTCCTGAGCACATTCCGCGTCCTGACTACTGGCAG
GATGGTGTACCAAAGGCCAAATTGCCTCGTTTTCCGTGGGAGCTTCACAG
TCTCACAGAACAGCAGATTCACAACATGCGAGAGTCATGCCGTGTCGCTC
GCGAGATCCTTGACATCGCCGGCCAAATGGTCAAGCCAGGAGTGCTTACT
GACCAAATTGACGCTGTTGTGCACGAAGAAACAGTGAAGCGTGGCGCATA
TCCATCCCCTCTCAACTACAACAGATTCCCGAAGTCGTGTTGTACCTCCA
TAAACGAGGTTGTATGTCATGGCATTCCGGACACTACCGCACTGGCAGAC
GGCGATATCATCAACATTGATGTAACTGTATACTACAATGGCTATCACGG
CGATTGTTCCGAAACATTTCTCGTCGGAGACGTTGACGAAAAAGGGAAAA
AGCTTGTTCGAGTTACCCACGAATGCCTGGAGAAGGCCATTGACTTTTGC
AAACCCGGAGTGCCCGTCAAGAAAATTGGAGCCGTTATCGAGGAGCATGC
CACGCGACACGGTTTTTCTGTTGTGCGCAATTTCTGTGGCCACGGCGTAA
ACTCTGTGTTTCACACCACCCCGAACGTAATGCATTTCAAGAACAATGAA
CCTGCGGGCATTCTCAAACCTGGCGTTACATTCACTATTGAACCAATGAT
TAACGAAGGCACTCATCGAAACATTATGTGGCCTGATGATTGGACTGCCA
CTACACTAGACGGCAAAAGAAGCGCTCAATTTGAGCATACGCTACTGGTC
ACAGACAATGGTGTTGAACGCCTGACGGCAAAGCTACAATCTAGTCCAAA
GTATTTCTGGGAACAATAG
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