Gcaud7463.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7463.t1
Unique Name	Gcaud7463.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	503

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1399_length_10964_cov_3.691529	contig	NODE_1399_length_10964_cov_3.691529:4143..5651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7463	Gcaud7463	Gracilaria caudata M_176_S67 male	gene	NODE_1399_length_10964_cov_3.691529 4143..5651 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7463.t1.start1	Gcaud7463.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1399_length_10964_cov_3.691529 4143..4145 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7463.t1.CDS1	Gcaud7463.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1399_length_10964_cov_3.691529 4143..5651 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7463.t1.exon1	Gcaud7463.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1399_length_10964_cov_3.691529 4143..5651 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7463.t1.stop1	Gcaud7463.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1399_length_10964_cov_3.691529 5649..5651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7463.t1	Gcaud7463.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1399_length_10964_cov_3.691529 4143..5651 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1399_length_10964_cov_3.691529:4143..5651+
coding sequence from alignment at NODE_1399_length_10964_cov_3.691529:4143..5651+

mRNA sequence

>Gcaud7463.t1 ID=Gcaud7463.t1|Name=Gcaud7463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=503bp
MLVTDLELRHAKDRISRFEQTMKETRQNKFNPARYRLNMKLPHASSFLSP
DEVLVATLDIPMESNWKLLARLQVDFENPKLQPFDHEFKVHQHAIIRILF
WKRREPSHPIGNLVLSLTDLCMAADERLLLPIQGFPPSTNIAEVSVGWIT
PKFETVVLHVQVCVNRKKGWPFSNARLYYILYTWESEGYRRWKPIYRSEI
LTMLAIDPRSKGPMKHVGARVRMDGSKTDENQTRPYRLEFFHYKPTSRDH
KLLAFSVFNLQQLRQTLVPNGRLHMKVNNFPPTELVGALQLLESTLEYGE
STFRLEASFGGEISEDILYVDIEVRNATNTPSGRISFGISVYTDQGAWEK
YYWSELSPTLVSGECHTFSVAKLSEKKLLAGANRRCISFAFFLGQGRQQR
QLGAANTTLSDLFSGQVLPLENEAGLLRVHTMERAVNGSSRAHLALCFEY
GARIPMPQQNTMGDALRIQSAAREEDEMPTGRGSLHSDDIETDDSPSNSN
SS*

spliced messenger RNA

>Gcaud7463.t1 ID=Gcaud7463.t1|Name=Gcaud7463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:4143..5651+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTTACAGACTTGGAGCTCCGTCATGCCAAAGACCGTATCTCCCG
CTTCGAGCAAACCATGAAGGAAACGCGACAGAACAAGTTCAATCCGGCCC
GATACCGCCTCAACATGAAGCTCCCGCACGCCTCTTCCTTTCTCAGCCCC
GATGAGGTTCTGGTCGCCACTCTGGACATTCCAATGGAGTCCAACTGGAA
GCTATTGGCAAGGTTGCAAGTCGACTTTGAGAATCCCAAACTGCAACCGT
TCGATCATGAGTTTAAGGTACATCAACACGCTATCATTCGAATTCTTTTT
TGGAAACGGCGGGAGCCTTCGCATCCCATAGGAAATTTGGTTCTGTCCTT
GACGGACTTGTGTATGGCAGCAGACGAAAGATTGTTGTTACCCATCCAGG
GATTTCCGCCTTCTACCAACATTGCCGAGGTTTCCGTTGGCTGGATTACG
CCAAAGTTTGAAACGGTTGTGCTTCATGTTCAGGTGTGTGTTAATAGGAA
GAAAGGCTGGCCGTTTTCGAATGCCAGATTGTACTATATTTTGTATACAT
GGGAGAGCGAAGGCTATCGAAGATGGAAGCCGATATACCGCTCGGAGATT
CTCACCATGCTGGCAATTGATCCACGCTCAAAAGGGCCCATGAAGCATGT
TGGAGCCAGGGTCAGAATGGACGGATCAAAAACGGATGAAAATCAGACAC
GACCCTATCGTCTAGAATTCTTCCACTACAAACCAACCAGTCGCGACCAC
AAGTTGCTCGCCTTTTCTGTGTTTAACCTTCAACAGTTGAGACAAACTCT
GGTTCCTAATGGCCGTCTCCACATGAAAGTCAACAACTTTCCGCCCACAG
AGCTTGTAGGTGCGTTGCAGCTTCTCGAGTCTACACTGGAGTATGGCGAG
AGTACCTTCAGACTCGAGGCATCATTTGGGGGTGAGATTTCAGAAGACAT
CCTATACGTTGACATTGAGGTACGAAACGCTACCAACACGCCATCAGGTC
GAATATCGTTCGGAATAAGCGTGTATACGGACCAAGGCGCGTGGGAAAAG
TACTACTGGTCCGAACTTTCTCCCACTCTCGTTTCCGGTGAGTGTCACAC
ATTCTCTGTAGCAAAACTGTCCGAGAAGAAGCTATTAGCAGGTGCGAACA
GAAGATGCATATCGTTTGCCTTTTTCCTGGGGCAAGGAAGACAGCAACGA
CAACTGGGCGCTGCAAACACCACATTGTCGGATTTGTTCAGTGGTCAAGT
GCTGCCACTAGAGAACGAAGCGGGTCTGCTGCGAGTGCATACGATGGAGA
GAGCTGTGAACGGCAGTTCAAGGGCTCATTTGGCTCTTTGTTTCGAATAC
GGTGCCAGGATTCCCATGCCGCAGCAAAATACAATGGGTGATGCGCTGAG
GATACAGTCTGCGGCACGCGAAGAGGACGAGATGCCAACAGGAAGAGGTT
CCCTCCATTCCGATGATATTGAAACCGATGATTCTCCAAGCAACAGCAAC
AGCAGTTAA

protein sequence of Gcaud7463.t1

>Gcaud7463.t1 ID=Gcaud7463.t1|Name=Gcaud7463.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=503bp
MLVTDLELRHAKDRISRFEQTMKETRQNKFNPARYRLNMKLPHASSFLSP
DEVLVATLDIPMESNWKLLARLQVDFENPKLQPFDHEFKVHQHAIIRILF
WKRREPSHPIGNLVLSLTDLCMAADERLLLPIQGFPPSTNIAEVSVGWIT
PKFETVVLHVQVCVNRKKGWPFSNARLYYILYTWESEGYRRWKPIYRSEI
LTMLAIDPRSKGPMKHVGARVRMDGSKTDENQTRPYRLEFFHYKPTSRDH
KLLAFSVFNLQQLRQTLVPNGRLHMKVNNFPPTELVGALQLLESTLEYGE
STFRLEASFGGEISEDILYVDIEVRNATNTPSGRISFGISVYTDQGAWEK
YYWSELSPTLVSGECHTFSVAKLSEKKLLAGANRRCISFAFFLGQGRQQR
QLGAANTTLSDLFSGQVLPLENEAGLLRVHTMERAVNGSSRAHLALCFEY
GARIPMPQQNTMGDALRIQSAAREEDEMPTGRGSLHSDDIETDDSPSNSN
SS*

mRNA from alignment at NODE_1399_length_10964_cov_3.691529:4143..5651+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7463.t1 ID=Gcaud7463.t1|Name=Gcaud7463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:4143..5651+ (Gracilaria caudata M_176_S67 male)
ATGTTGGTTACAGACTTGGAGCTCCGTCATGCCAAAGACCGTATCTCCCG
CTTCGAGCAAACCATGAAGGAAACGCGACAGAACAAGTTCAATCCGGCCC
GATACCGCCTCAACATGAAGCTCCCGCACGCCTCTTCCTTTCTCAGCCCC
GATGAGGTTCTGGTCGCCACTCTGGACATTCCAATGGAGTCCAACTGGAA
GCTATTGGCAAGGTTGCAAGTCGACTTTGAGAATCCCAAACTGCAACCGT
TCGATCATGAGTTTAAGGTACATCAACACGCTATCATTCGAATTCTTTTT
TGGAAACGGCGGGAGCCTTCGCATCCCATAGGAAATTTGGTTCTGTCCTT
GACGGACTTGTGTATGGCAGCAGACGAAAGATTGTTGTTACCCATCCAGG
GATTTCCGCCTTCTACCAACATTGCCGAGGTTTCCGTTGGCTGGATTACG
CCAAAGTTTGAAACGGTTGTGCTTCATGTTCAGGTGTGTGTTAATAGGAA
GAAAGGCTGGCCGTTTTCGAATGCCAGATTGTACTATATTTTGTATACAT
GGGAGAGCGAAGGCTATCGAAGATGGAAGCCGATATACCGCTCGGAGATT
CTCACCATGCTGGCAATTGATCCACGCTCAAAAGGGCCCATGAAGCATGT
TGGAGCCAGGGTCAGAATGGACGGATCAAAAACGGATGAAAATCAGACAC
GACCCTATCGTCTAGAATTCTTCCACTACAAACCAACCAGTCGCGACCAC
AAGTTGCTCGCCTTTTCTGTGTTTAACCTTCAACAGTTGAGACAAACTCT
GGTTCCTAATGGCCGTCTCCACATGAAAGTCAACAACTTTCCGCCCACAG
AGCTTGTAGGTGCGTTGCAGCTTCTCGAGTCTACACTGGAGTATGGCGAG
AGTACCTTCAGACTCGAGGCATCATTTGGGGGTGAGATTTCAGAAGACAT
CCTATACGTTGACATTGAGGTACGAAACGCTACCAACACGCCATCAGGTC
GAATATCGTTCGGAATAAGCGTGTATACGGACCAAGGCGCGTGGGAAAAG
TACTACTGGTCCGAACTTTCTCCCACTCTCGTTTCCGGTGAGTGTCACAC
ATTCTCTGTAGCAAAACTGTCCGAGAAGAAGCTATTAGCAGGTGCGAACA
GAAGATGCATATCGTTTGCCTTTTTCCTGGGGCAAGGAAGACAGCAACGA
CAACTGGGCGCTGCAAACACCACATTGTCGGATTTGTTCAGTGGTCAAGT
GCTGCCACTAGAGAACGAAGCGGGTCTGCTGCGAGTGCATACGATGGAGA
GAGCTGTGAACGGCAGTTCAAGGGCTCATTTGGCTCTTTGTTTCGAATAC
GGTGCCAGGATTCCCATGCCGCAGCAAAATACAATGGGTGATGCGCTGAG
GATACAGTCTGCGGCACGCGAAGAGGACGAGATGCCAACAGGAAGAGGTT
CCCTCCATTCCGATGATATTGAAACCGATGATTCTCCAAGCAACAGCAAC
AGCAGTTAA

Coding sequence (CDS) from alignment at NODE_1399_length_10964_cov_3.691529:4143..5651+

>Gcaud7463.t1 ID=Gcaud7463.t1|Name=Gcaud7463.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1509bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:4143..5651+ (Gracilaria caudata M_176_S67 male)
ATGTTGGTTACAGACTTGGAGCTCCGTCATGCCAAAGACCGTATCTCCCG
CTTCGAGCAAACCATGAAGGAAACGCGACAGAACAAGTTCAATCCGGCCC
GATACCGCCTCAACATGAAGCTCCCGCACGCCTCTTCCTTTCTCAGCCCC
GATGAGGTTCTGGTCGCCACTCTGGACATTCCAATGGAGTCCAACTGGAA
GCTATTGGCAAGGTTGCAAGTCGACTTTGAGAATCCCAAACTGCAACCGT
TCGATCATGAGTTTAAGGTACATCAACACGCTATCATTCGAATTCTTTTT
TGGAAACGGCGGGAGCCTTCGCATCCCATAGGAAATTTGGTTCTGTCCTT
GACGGACTTGTGTATGGCAGCAGACGAAAGATTGTTGTTACCCATCCAGG
GATTTCCGCCTTCTACCAACATTGCCGAGGTTTCCGTTGGCTGGATTACG
CCAAAGTTTGAAACGGTTGTGCTTCATGTTCAGGTGTGTGTTAATAGGAA
GAAAGGCTGGCCGTTTTCGAATGCCAGATTGTACTATATTTTGTATACAT
GGGAGAGCGAAGGCTATCGAAGATGGAAGCCGATATACCGCTCGGAGATT
CTCACCATGCTGGCAATTGATCCACGCTCAAAAGGGCCCATGAAGCATGT
TGGAGCCAGGGTCAGAATGGACGGATCAAAAACGGATGAAAATCAGACAC
GACCCTATCGTCTAGAATTCTTCCACTACAAACCAACCAGTCGCGACCAC
AAGTTGCTCGCCTTTTCTGTGTTTAACCTTCAACAGTTGAGACAAACTCT
GGTTCCTAATGGCCGTCTCCACATGAAAGTCAACAACTTTCCGCCCACAG
AGCTTGTAGGTGCGTTGCAGCTTCTCGAGTCTACACTGGAGTATGGCGAG
AGTACCTTCAGACTCGAGGCATCATTTGGGGGTGAGATTTCAGAAGACAT
CCTATACGTTGACATTGAGGTACGAAACGCTACCAACACGCCATCAGGTC
GAATATCGTTCGGAATAAGCGTGTATACGGACCAAGGCGCGTGGGAAAAG
TACTACTGGTCCGAACTTTCTCCCACTCTCGTTTCCGGTGAGTGTCACAC
ATTCTCTGTAGCAAAACTGTCCGAGAAGAAGCTATTAGCAGGTGCGAACA
GAAGATGCATATCGTTTGCCTTTTTCCTGGGGCAAGGAAGACAGCAACGA
CAACTGGGCGCTGCAAACACCACATTGTCGGATTTGTTCAGTGGTCAAGT
GCTGCCACTAGAGAACGAAGCGGGTCTGCTGCGAGTGCATACGATGGAGA
GAGCTGTGAACGGCAGTTCAAGGGCTCATTTGGCTCTTTGTTTCGAATAC
GGTGCCAGGATTCCCATGCCGCAGCAAAATACAATGGGTGATGCGCTGAG
GATACAGTCTGCGGCACGCGAAGAGGACGAGATGCCAACAGGAAGAGGTT
CCCTCCATTCCGATGATATTGAAACCGATGATTCTCCAAGCAACAGCAAC
AGCAGTTAA