Gcaud7462.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7462.t1
Unique NameGcaud7462.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1399_length_10964_cov_3.691529contigNODE_1399_length_10964_cov_3.691529:875..2496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7462Gcaud7462Gracilaria caudata M_176_S67 malegeneNODE_1399_length_10964_cov_3.691529 875..2496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7462.t1Gcaud7462.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1399_length_10964_cov_3.691529 875..2496 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7462.t1.start1Gcaud7462.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1399_length_10964_cov_3.691529 875..877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7462.t1.CDS1Gcaud7462.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1399_length_10964_cov_3.691529 875..2020 +
Gcaud7462.t1.CDS2Gcaud7462.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1399_length_10964_cov_3.691529 2123..2167 +
Gcaud7462.t1.CDS3Gcaud7462.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1399_length_10964_cov_3.691529 2227..2496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7462.t1.exon1Gcaud7462.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1399_length_10964_cov_3.691529 875..2020 +
Gcaud7462.t1.exon2Gcaud7462.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1399_length_10964_cov_3.691529 2123..2167 +
Gcaud7462.t1.exon3Gcaud7462.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1399_length_10964_cov_3.691529 2227..2496 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7462.t1.intron1Gcaud7462.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1399_length_10964_cov_3.691529 2021..2122 +
Gcaud7462.t1.intron2Gcaud7462.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1399_length_10964_cov_3.691529 2168..2226 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7462.t1.stop1Gcaud7462.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1399_length_10964_cov_3.691529 2494..2496 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7462.t1 ID=Gcaud7462.t1|Name=Gcaud7462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=487bp
MENHAHLPKFWLLFVLLFSASSKSEGTIGPQPERSNRFYSKSSGARFSNA
RQENGNILEDVAQTLSNNPSAASGGISEMIASIMAMPSGSPGMDGSEISD
IPMGSNPAMVTPMATPMISPTSFAGEGLNTGDSPIASISPVVSNDVSATL
LASPSPEMPAPTISPIATELISPAAVLPTMTMEPEPSSETPAPSQTDDVT
SVASPTPLVQETLAPMMSLSPSELPSFPPGDGIMDMPLVSASPTFGVSPM
PSNIDEVAAASASAAFPSPSMELSTPSMDVQTTATPEETSPGASSIVSPQ
PSSLIGTPLASMTPIAPEASDGPSTDETPSPSAMSGIQEMMAAQASLTPE
ASSLMTPDPSLSSTSPGSLGQAGLEPFDISTGDMEDIDDDEAMMSPGYDG
ISNTYERFRNAKYQLVIVSEYEYLCITEHEFITQPKPQWVSISERKQERF
CHAKHKFIDDAERKCISNTKCKHERHTISKCISDAG*
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spliced messenger RNA

>Gcaud7462.t1 ID=Gcaud7462.t1|Name=Gcaud7462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:875..2496+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAATCATGCGCACCTCCCGAAGTTTTGGCTGCTCTTTGTTCTCCT
CTTTTCCGCTTCGTCGAAATCCGAGGGCACGATCGGCCCACAACCAGAAC
GGTCGAACAGGTTCTATTCAAAGAGTTCTGGTGCAAGGTTCTCCAATGCA
CGTCAAGAGAATGGTAACATTCTGGAAGATGTCGCGCAAACGCTGAGCAA
TAACCCTTCTGCTGCTTCAGGGGGAATATCTGAGATGATTGCAAGCATTA
TGGCCATGCCATCTGGATCACCGGGCATGGACGGCAGTGAGATTAGTGAT
ATACCGATGGGATCAAATCCTGCGATGGTAACACCGATGGCAACGCCGAT
GATATCACCGACATCCTTCGCGGGGGAGGGGTTGAACACAGGAGACAGTC
CTATTGCTTCCATATCTCCTGTTGTGTCCAATGATGTGTCGGCCACCCTA
CTCGCCTCTCCTTCGCCAGAAATGCCAGCCCCGACAATATCTCCTATCGC
AACCGAGCTCATATCACCTGCAGCTGTCCTTCCGACTATGACGATGGAAC
CGGAACCAAGTTCAGAGACTCCTGCGCCGTCTCAGACTGATGACGTAACA
TCTGTTGCATCTCCTACACCGCTGGTTCAGGAAACATTGGCTCCAATGAT
GTCACTGTCACCTTCTGAACTCCCGTCTTTTCCACCAGGAGATGGCATAA
TGGATATGCCACTTGTTTCCGCTTCTCCAACATTTGGAGTTTCTCCAATG
CCCAGCAACATCGATGAAGTGGCTGCTGCATCTGCTTCCGCTGCGTTTCC
ATCCCCCAGCATGGAACTATCGACACCATCAATGGATGTTCAGACGACTG
CCACACCGGAAGAGACATCCCCAGGCGCCTCCTCGATTGTTTCGCCCCAG
CCGTCATCGTTGATTGGAACGCCACTTGCGAGCATGACTCCAATAGCTCC
AGAAGCAAGTGACGGTCCGAGCACCGATGAAACACCATCTCCATCGGCTA
TGTCAGGCATTCAAGAGATGATGGCTGCACAAGCCTCACTAACTCCGGAA
GCATCGAGTTTGATGACCCCGGATCCTTCACTTTCCTCAACCTCCCCCGG
TTCATTAGGACAAGCCGGTCTAGAACCATTCGACATATCTACTGGAGATA
TGGAGGATATCGACGATGACGAAGCCATGATGTCCCCTGGGTATGATGGC
ATCAGCAACACCTACGAGCGTTTCCGTAACGCCAAGTATCAGCTTGTCAT
CGTCTCCGAGTATGAGTACCTCTGCATCACCGAGCATGAGTTCATCACTC
AGCCCAAGCCCCAGTGGGTCAGCATCTCCGAGCGCAAGCAGGAGCGCTTC
TGTCACGCCAAGCATAAGTTCATCGATGACGCCGAGCGCAAGTGCATCAG
TAACACCAAGTGCAAGCATGAGCGCCACACCATCAGCAAGTGCATCTCCG
ATGCCGGATGA
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protein sequence of Gcaud7462.t1

>Gcaud7462.t1 ID=Gcaud7462.t1|Name=Gcaud7462.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=487bp
MENHAHLPKFWLLFVLLFSASSKSEGTIGPQPERSNRFYSKSSGARFSNA
RQENGNILEDVAQTLSNNPSAASGGISEMIASIMAMPSGSPGMDGSEISD
IPMGSNPAMVTPMATPMISPTSFAGEGLNTGDSPIASISPVVSNDVSATL
LASPSPEMPAPTISPIATELISPAAVLPTMTMEPEPSSETPAPSQTDDVT
SVASPTPLVQETLAPMMSLSPSELPSFPPGDGIMDMPLVSASPTFGVSPM
PSNIDEVAAASASAAFPSPSMELSTPSMDVQTTATPEETSPGASSIVSPQ
PSSLIGTPLASMTPIAPEASDGPSTDETPSPSAMSGIQEMMAAQASLTPE
ASSLMTPDPSLSSTSPGSLGQAGLEPFDISTGDMEDIDDDEAMMSPGYDG
ISNTYERFRNAKYQLVIVSEYEYLCITEHEFITQPKPQWVSISERKQERF
CHAKHKFIDDAERKCISNTKCKHERHTISKCISDAG*
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mRNA from alignment at NODE_1399_length_10964_cov_3.691529:875..2496+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7462.t1 ID=Gcaud7462.t1|Name=Gcaud7462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1622bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:875..2496+ (Gracilaria caudata M_176_S67 male)
ATGGAGAATCATGCGCACCTCCCGAAGTTTTGGCTGCTCTTTGTTCTCCT
CTTTTCCGCTTCGTCGAAATCCGAGGGCACGATCGGCCCACAACCAGAAC
GGTCGAACAGGTTCTATTCAAAGAGTTCTGGTGCAAGGTTCTCCAATGCA
CGTCAAGAGAATGGTAACATTCTGGAAGATGTCGCGCAAACGCTGAGCAA
TAACCCTTCTGCTGCTTCAGGGGGAATATCTGAGATGATTGCAAGCATTA
TGGCCATGCCATCTGGATCACCGGGCATGGACGGCAGTGAGATTAGTGAT
ATACCGATGGGATCAAATCCTGCGATGGTAACACCGATGGCAACGCCGAT
GATATCACCGACATCCTTCGCGGGGGAGGGGTTGAACACAGGAGACAGTC
CTATTGCTTCCATATCTCCTGTTGTGTCCAATGATGTGTCGGCCACCCTA
CTCGCCTCTCCTTCGCCAGAAATGCCAGCCCCGACAATATCTCCTATCGC
AACCGAGCTCATATCACCTGCAGCTGTCCTTCCGACTATGACGATGGAAC
CGGAACCAAGTTCAGAGACTCCTGCGCCGTCTCAGACTGATGACGTAACA
TCTGTTGCATCTCCTACACCGCTGGTTCAGGAAACATTGGCTCCAATGAT
GTCACTGTCACCTTCTGAACTCCCGTCTTTTCCACCAGGAGATGGCATAA
TGGATATGCCACTTGTTTCCGCTTCTCCAACATTTGGAGTTTCTCCAATG
CCCAGCAACATCGATGAAGTGGCTGCTGCATCTGCTTCCGCTGCGTTTCC
ATCCCCCAGCATGGAACTATCGACACCATCAATGGATGTTCAGACGACTG
CCACACCGGAAGAGACATCCCCAGGCGCCTCCTCGATTGTTTCGCCCCAG
CCGTCATCGTTGATTGGAACGCCACTTGCGAGCATGACTCCAATAGCTCC
AGAAGCAAGTGACGGTCCGAGCACCGATGAAACACCATCTCCATCGGCTA
TGTCAGGCATTCAAGAGATGATGGCTGCACAAGCCTCACTAACTCCGGAA
GCATCGAGTTTGATGACCCCGGATCCTTCACTTTCCTCAACCTCCCCCGG
TTCATTAGGACAAGCCGGTCTAGAACCATTCGACATATCTACTGGAGTAA
GTTGTTATCACCCTACAGCGAAAGTGCTCATGTTTTCTCTTCTTTCGCAG
ATTGCATGTAACTAACATAACCTTTGTTTTACTTCTAAAATAACAAAGGA
TATGGAGGATATCGACGATGACGAAGCCATGATGTCCCCTGGGGTAACGG
AGGACGTGATGACCCCGATACCAAGCTTCTCACCACCTATGATGACAATG
AGTATGATGGCATCAGCAACACCTACGAGCGTTTCCGTAACGCCAAGTAT
CAGCTTGTCATCGTCTCCGAGTATGAGTACCTCTGCATCACCGAGCATGA
GTTCATCACTCAGCCCAAGCCCCAGTGGGTCAGCATCTCCGAGCGCAAGC
AGGAGCGCTTCTGTCACGCCAAGCATAAGTTCATCGATGACGCCGAGCGC
AAGTGCATCAGTAACACCAAGTGCAAGCATGAGCGCCACACCATCAGCAA
GTGCATCTCCGATGCCGGATGA
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Coding sequence (CDS) from alignment at NODE_1399_length_10964_cov_3.691529:875..2496+

>Gcaud7462.t1 ID=Gcaud7462.t1|Name=Gcaud7462.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1461bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:875..2496+ (Gracilaria caudata M_176_S67 male)
ATGGAGAATCATGCGCACCTCCCGAAGTTTTGGCTGCTCTTTGTTCTCCT
CTTTTCCGCTTCGTCGAAATCCGAGGGCACGATCGGCCCACAACCAGAAC
GGTCGAACAGGTTCTATTCAAAGAGTTCTGGTGCAAGGTTCTCCAATGCA
CGTCAAGAGAATGGTAACATTCTGGAAGATGTCGCGCAAACGCTGAGCAA
TAACCCTTCTGCTGCTTCAGGGGGAATATCTGAGATGATTGCAAGCATTA
TGGCCATGCCATCTGGATCACCGGGCATGGACGGCAGTGAGATTAGTGAT
ATACCGATGGGATCAAATCCTGCGATGGTAACACCGATGGCAACGCCGAT
GATATCACCGACATCCTTCGCGGGGGAGGGGTTGAACACAGGAGACAGTC
CTATTGCTTCCATATCTCCTGTTGTGTCCAATGATGTGTCGGCCACCCTA
CTCGCCTCTCCTTCGCCAGAAATGCCAGCCCCGACAATATCTCCTATCGC
AACCGAGCTCATATCACCTGCAGCTGTCCTTCCGACTATGACGATGGAAC
CGGAACCAAGTTCAGAGACTCCTGCGCCGTCTCAGACTGATGACGTAACA
TCTGTTGCATCTCCTACACCGCTGGTTCAGGAAACATTGGCTCCAATGAT
GTCACTGTCACCTTCTGAACTCCCGTCTTTTCCACCAGGAGATGGCATAA
TGGATATGCCACTTGTTTCCGCTTCTCCAACATTTGGAGTTTCTCCAATG
CCCAGCAACATCGATGAAGTGGCTGCTGCATCTGCTTCCGCTGCGTTTCC
ATCCCCCAGCATGGAACTATCGACACCATCAATGGATGTTCAGACGACTG
CCACACCGGAAGAGACATCCCCAGGCGCCTCCTCGATTGTTTCGCCCCAG
CCGTCATCGTTGATTGGAACGCCACTTGCGAGCATGACTCCAATAGCTCC
AGAAGCAAGTGACGGTCCGAGCACCGATGAAACACCATCTCCATCGGCTA
TGTCAGGCATTCAAGAGATGATGGCTGCACAAGCCTCACTAACTCCGGAA
GCATCGAGTTTGATGACCCCGGATCCTTCACTTTCCTCAACCTCCCCCGG
TTCATTAGGACAAGCCGGTCTAGAACCATTCGACATATCTACTGGAGATA
TGGAGGATATCGACGATGACGAAGCCATGATGTCCCCTGGGTATGATGGC
ATCAGCAACACCTACGAGCGTTTCCGTAACGCCAAGTATCAGCTTGTCAT
CGTCTCCGAGTATGAGTACCTCTGCATCACCGAGCATGAGTTCATCACTC
AGCCCAAGCCCCAGTGGGTCAGCATCTCCGAGCGCAAGCAGGAGCGCTTC
TGTCACGCCAAGCATAAGTTCATCGATGACGCCGAGCGCAAGTGCATCAG
TAACACCAAGTGCAAGCATGAGCGCCACACCATCAGCAAGTGCATCTCCG
ATGCCGGATGA
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