Gcaud744.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud744.t1
Unique Name	Gcaud744.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	498

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4210_length_2468_cov_3.188473	contig	NODE_4210_length_2468_cov_3.188473:394..1887 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708174.1
PFAMs	Pribosyltran
Max annot lvl	2759\|Eukaryota
Evalue	2.35e-81
EggNOG OGs	COG0503@1\|root,2S277@2759\|Eukaryota
Description	Phosphoribosyl transferase domain
COG category	F

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud744	Gcaud744	Gracilaria caudata M_176_S67 male	gene	NODE_4210_length_2468_cov_3.188473 394..1887 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud744.t1.stop1	Gcaud744.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4210_length_2468_cov_3.188473 394..396 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud744.t1.CDS1	Gcaud744.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4210_length_2468_cov_3.188473 394..1887 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud744.t1.exon1	Gcaud744.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4210_length_2468_cov_3.188473 394..1887 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud744.t1.start1	Gcaud744.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4210_length_2468_cov_3.188473 1885..1887 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud744.t1	Gcaud744.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4210_length_2468_cov_3.188473 394..1887 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4210_length_2468_cov_3.188473:394..1887-
coding sequence from alignment at NODE_4210_length_2468_cov_3.188473:394..1887-

mRNA sequence

>Gcaud744.t1 ID=Gcaud744.t1|Name=Gcaud744.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp
LDEYREHKQAGLISSALYSTAHDADEYTDAWALAVDNHKANELKNQYSRV
AILIEHNFADFEPAQGCEHAFRNATIEEIAFAKARAVYDATGLPAIAEFH
DMTIEPPKSSANINKTMQQGYYTRDVANEADAMIERVRPISDENRMTTFN
SAVAYFDGEMHIVAQRSSSIAMAFAAAHHATIAVAAALDELFMQLSRRLK
LTFDSPSQFGSYAERVDAQGDAKPLVGATMLKERILREGKMLGDGIIKVS
SFLNHMVDTDLMQVCGEELAERLRHTMPNKVLTVESTGLIAGLPTANTLG
IPLLFARKSRPITISDSYQTTYRSATKGTSNELIVSCEYLEAGDRVLIID
DFLAGGSTAEALFKLAKMAHAKVVGVGVLIEKMMDGGRAFLSGYDVPVES
LAKLLPAQDKGRITFVEEEPWVSPMAKQLARRGAEERDDAAQGDVEAMSD
GGDSGEGEEDEEEDGDVDDVDVIRWEDDDEELQALDEVEERLLRGKT*

spliced messenger RNA

>Gcaud744.t1 ID=Gcaud744.t1|Name=Gcaud744.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at NODE_4210_length_2468_cov_3.188473:394..1887- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGACGAGTACCGCGAGCACAAACAAGCCGGTTTGATCTCGTCCGCGCT
GTATTCTACCGCCCATGATGCTGATGAGTACACGGATGCGTGGGCGCTGG
CTGTGGACAATCACAAGGCGAATGAACTCAAAAACCAGTATTCGCGAGTG
GCCATTCTCATTGAGCACAACTTTGCTGACTTTGAGCCTGCGCAGGGCTG
TGAACATGCCTTTCGTAATGCCACCATTGAGGAGATTGCCTTTGCCAAGG
CAAGGGCCGTGTATGATGCCACGGGGCTTCCGGCCATTGCCGAGTTTCAT
GACATGACCATTGAACCGCCCAAGTCCTCCGCAAACATCAACAAGACCAT
GCAGCAGGGCTATTACACCAGAGATGTAGCCAACGAAGCCGACGCCATGA
TTGAGCGCGTCAGACCCATCTCCGATGAGAATCGCATGACTACTTTCAAC
AGCGCCGTCGCGTATTTTGACGGCGAGATGCACATTGTGGCGCAGCGCTC
GTCCAGTATTGCAATGGCGTTTGCCGCTGCACACCACGCCACCATTGCGG
TTGCTGCTGCGTTGGATGAGTTGTTCATGCAGCTTTCGCGTCGACTCAAG
CTCACGTTCGATTCGCCGTCACAGTTTGGCTCGTACGCAGAGCGTGTTGA
CGCGCAGGGTGATGCAAAGCCGCTCGTGGGTGCCACCATGCTCAAGGAGC
GCATCTTGCGGGAGGGCAAGATGTTGGGTGACGGCATCATCAAGGTGTCG
TCGTTCTTGAACCACATGGTGGACACCGACCTCATGCAGGTGTGTGGAGA
GGAACTGGCTGAGAGGCTGCGGCATACCATGCCGAACAAGGTTCTGACCG
TGGAGTCTACCGGCTTGATTGCTGGCTTGCCAACGGCCAACACGCTTGGA
ATACCGTTGCTGTTTGCGCGAAAGAGCCGCCCTATCACTATAAGCGACTC
GTATCAGACTACGTACCGTTCGGCCACCAAGGGCACCAGCAACGAACTGA
TTGTGTCGTGCGAGTACCTGGAGGCGGGGGACCGTGTGCTCATCATCGAC
GACTTTCTGGCTGGCGGCTCTACGGCGGAGGCGCTGTTCAAGCTGGCCAA
AATGGCGCACGCCAAGGTGGTGGGCGTAGGCGTGCTGATAGAGAAGATGA
TGGACGGTGGACGCGCGTTCCTGTCGGGCTACGACGTGCCGGTGGAATCT
CTGGCCAAGCTGCTGCCTGCGCAAGACAAGGGGCGCATCACTTTTGTGGA
GGAAGAACCGTGGGTGTCGCCGATGGCCAAACAGCTGGCGAGGCGCGGCG
CTGAGGAGCGTGACGATGCGGCGCAGGGTGACGTTGAAGCGATGAGTGAC
GGCGGCGACAGCGGCGAGGGGGAGGAGGACGAGGAGGAGGACGGGGACGT
GGACGACGTGGACGTGATCCGATGGGAGGACGACGATGAAGAGCTACAGG
CGCTGGACGAGGTGGAGGAGCGGCTGCTGCGTGGGAAGACGTGA

protein sequence of Gcaud744.t1

>Gcaud744.t1 ID=Gcaud744.t1|Name=Gcaud744.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=498bp
LDEYREHKQAGLISSALYSTAHDADEYTDAWALAVDNHKANELKNQYSRV
AILIEHNFADFEPAQGCEHAFRNATIEEIAFAKARAVYDATGLPAIAEFH
DMTIEPPKSSANINKTMQQGYYTRDVANEADAMIERVRPISDENRMTTFN
SAVAYFDGEMHIVAQRSSSIAMAFAAAHHATIAVAAALDELFMQLSRRLK
LTFDSPSQFGSYAERVDAQGDAKPLVGATMLKERILREGKMLGDGIIKVS
SFLNHMVDTDLMQVCGEELAERLRHTMPNKVLTVESTGLIAGLPTANTLG
IPLLFARKSRPITISDSYQTTYRSATKGTSNELIVSCEYLEAGDRVLIID
DFLAGGSTAEALFKLAKMAHAKVVGVGVLIEKMMDGGRAFLSGYDVPVES
LAKLLPAQDKGRITFVEEEPWVSPMAKQLARRGAEERDDAAQGDVEAMSD
GGDSGEGEEDEEEDGDVDDVDVIRWEDDDEELQALDEVEERLLRGKT*

mRNA from alignment at NODE_4210_length_2468_cov_3.188473:394..1887-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud744.t1 ID=Gcaud744.t1|Name=Gcaud744.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at NODE_4210_length_2468_cov_3.188473:394..1887- (Gracilaria caudata M_176_S67 male)
TTGGACGAGTACCGCGAGCACAAACAAGCCGGTTTGATCTCGTCCGCGCT
GTATTCTACCGCCCATGATGCTGATGAGTACACGGATGCGTGGGCGCTGG
CTGTGGACAATCACAAGGCGAATGAACTCAAAAACCAGTATTCGCGAGTG
GCCATTCTCATTGAGCACAACTTTGCTGACTTTGAGCCTGCGCAGGGCTG
TGAACATGCCTTTCGTAATGCCACCATTGAGGAGATTGCCTTTGCCAAGG
CAAGGGCCGTGTATGATGCCACGGGGCTTCCGGCCATTGCCGAGTTTCAT
GACATGACCATTGAACCGCCCAAGTCCTCCGCAAACATCAACAAGACCAT
GCAGCAGGGCTATTACACCAGAGATGTAGCCAACGAAGCCGACGCCATGA
TTGAGCGCGTCAGACCCATCTCCGATGAGAATCGCATGACTACTTTCAAC
AGCGCCGTCGCGTATTTTGACGGCGAGATGCACATTGTGGCGCAGCGCTC
GTCCAGTATTGCAATGGCGTTTGCCGCTGCACACCACGCCACCATTGCGG
TTGCTGCTGCGTTGGATGAGTTGTTCATGCAGCTTTCGCGTCGACTCAAG
CTCACGTTCGATTCGCCGTCACAGTTTGGCTCGTACGCAGAGCGTGTTGA
CGCGCAGGGTGATGCAAAGCCGCTCGTGGGTGCCACCATGCTCAAGGAGC
GCATCTTGCGGGAGGGCAAGATGTTGGGTGACGGCATCATCAAGGTGTCG
TCGTTCTTGAACCACATGGTGGACACCGACCTCATGCAGGTGTGTGGAGA
GGAACTGGCTGAGAGGCTGCGGCATACCATGCCGAACAAGGTTCTGACCG
TGGAGTCTACCGGCTTGATTGCTGGCTTGCCAACGGCCAACACGCTTGGA
ATACCGTTGCTGTTTGCGCGAAAGAGCCGCCCTATCACTATAAGCGACTC
GTATCAGACTACGTACCGTTCGGCCACCAAGGGCACCAGCAACGAACTGA
TTGTGTCGTGCGAGTACCTGGAGGCGGGGGACCGTGTGCTCATCATCGAC
GACTTTCTGGCTGGCGGCTCTACGGCGGAGGCGCTGTTCAAGCTGGCCAA
AATGGCGCACGCCAAGGTGGTGGGCGTAGGCGTGCTGATAGAGAAGATGA
TGGACGGTGGACGCGCGTTCCTGTCGGGCTACGACGTGCCGGTGGAATCT
CTGGCCAAGCTGCTGCCTGCGCAAGACAAGGGGCGCATCACTTTTGTGGA
GGAAGAACCGTGGGTGTCGCCGATGGCCAAACAGCTGGCGAGGCGCGGCG
CTGAGGAGCGTGACGATGCGGCGCAGGGTGACGTTGAAGCGATGAGTGAC
GGCGGCGACAGCGGCGAGGGGGAGGAGGACGAGGAGGAGGACGGGGACGT
GGACGACGTGGACGTGATCCGATGGGAGGACGACGATGAAGAGCTACAGG
CGCTGGACGAGGTGGAGGAGCGGCTGCTGCGTGGGAAGACGTGA

Coding sequence (CDS) from alignment at NODE_4210_length_2468_cov_3.188473:394..1887-

>Gcaud744.t1 ID=Gcaud744.t1|Name=Gcaud744.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1494bp|location=Sequence derived from alignment at NODE_4210_length_2468_cov_3.188473:394..1887- (Gracilaria caudata M_176_S67 male)
TTGGACGAGTACCGCGAGCACAAACAAGCCGGTTTGATCTCGTCCGCGCT
GTATTCTACCGCCCATGATGCTGATGAGTACACGGATGCGTGGGCGCTGG
CTGTGGACAATCACAAGGCGAATGAACTCAAAAACCAGTATTCGCGAGTG
GCCATTCTCATTGAGCACAACTTTGCTGACTTTGAGCCTGCGCAGGGCTG
TGAACATGCCTTTCGTAATGCCACCATTGAGGAGATTGCCTTTGCCAAGG
CAAGGGCCGTGTATGATGCCACGGGGCTTCCGGCCATTGCCGAGTTTCAT
GACATGACCATTGAACCGCCCAAGTCCTCCGCAAACATCAACAAGACCAT
GCAGCAGGGCTATTACACCAGAGATGTAGCCAACGAAGCCGACGCCATGA
TTGAGCGCGTCAGACCCATCTCCGATGAGAATCGCATGACTACTTTCAAC
AGCGCCGTCGCGTATTTTGACGGCGAGATGCACATTGTGGCGCAGCGCTC
GTCCAGTATTGCAATGGCGTTTGCCGCTGCACACCACGCCACCATTGCGG
TTGCTGCTGCGTTGGATGAGTTGTTCATGCAGCTTTCGCGTCGACTCAAG
CTCACGTTCGATTCGCCGTCACAGTTTGGCTCGTACGCAGAGCGTGTTGA
CGCGCAGGGTGATGCAAAGCCGCTCGTGGGTGCCACCATGCTCAAGGAGC
GCATCTTGCGGGAGGGCAAGATGTTGGGTGACGGCATCATCAAGGTGTCG
TCGTTCTTGAACCACATGGTGGACACCGACCTCATGCAGGTGTGTGGAGA
GGAACTGGCTGAGAGGCTGCGGCATACCATGCCGAACAAGGTTCTGACCG
TGGAGTCTACCGGCTTGATTGCTGGCTTGCCAACGGCCAACACGCTTGGA
ATACCGTTGCTGTTTGCGCGAAAGAGCCGCCCTATCACTATAAGCGACTC
GTATCAGACTACGTACCGTTCGGCCACCAAGGGCACCAGCAACGAACTGA
TTGTGTCGTGCGAGTACCTGGAGGCGGGGGACCGTGTGCTCATCATCGAC
GACTTTCTGGCTGGCGGCTCTACGGCGGAGGCGCTGTTCAAGCTGGCCAA
AATGGCGCACGCCAAGGTGGTGGGCGTAGGCGTGCTGATAGAGAAGATGA
TGGACGGTGGACGCGCGTTCCTGTCGGGCTACGACGTGCCGGTGGAATCT
CTGGCCAAGCTGCTGCCTGCGCAAGACAAGGGGCGCATCACTTTTGTGGA
GGAAGAACCGTGGGTGTCGCCGATGGCCAAACAGCTGGCGAGGCGCGGCG
CTGAGGAGCGTGACGATGCGGCGCAGGGTGACGTTGAAGCGATGAGTGAC
GGCGGCGACAGCGGCGAGGGGGAGGAGGACGAGGAGGAGGACGGGGACGT
GGACGACGTGGACGTGATCCGATGGGAGGACGACGATGAAGAGCTACAGG
CGCTGGACGAGGTGGAGGAGCGGCTGCTGCGTGGGAAGACGTGA