Gcaud7422.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7422.t1
Unique Name	Gcaud7422.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	223

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_10_length_87931_cov_4.732901	contig	NODE_10_length_87931_cov_4.732901:30406..31074 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0STH8
PFAMs	Ribosomal_L10
Max annot lvl	2836\|Bacillariophyta
KEGG ko	ko:K02864
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Evalue	1.26e-37
EggNOG OGs	COG0244@1\|root,2S56U@2759\|Eukaryota,2XBWC@2836\|Bacillariophyta
Description	Ribosomal protein L10
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7422	Gcaud7422	Gracilaria caudata M_176_S67 male	gene	NODE_10_length_87931_cov_4.732901 30406..31074 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7422.t1.start1	Gcaud7422.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_10_length_87931_cov_4.732901 30406..30408 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7422.t1.CDS1	Gcaud7422.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 30406..31074 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7422.t1.exon1	Gcaud7422.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 30406..31074 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7422.t1.stop1	Gcaud7422.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_10_length_87931_cov_4.732901 31072..31074 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7422.t1	Gcaud7422.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_10_length_87931_cov_4.732901 30406..31074 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_10_length_87931_cov_4.732901:30406..31074+
coding sequence from alignment at NODE_10_length_87931_cov_4.732901:30406..31074+

mRNA sequence

>Gcaud7422.t1 ID=Gcaud7422.t1|Name=Gcaud7422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=223bp
MENVAFTAPLSIGVSKLNVGFQVCTGRRSSTTLYRKSNVRMASERILAKK
SAIVDSVKERLTESQMIFAVPLDGFKVADVFKMRRELPEGTIARTVKNSL
MRRAIAESEWEVVGDFLQQSNLWFFVKEDIKGSVKAYESFARTAKKAGIK
GGAFEGERCDEAGIQAIAALPTKLELITQVAVGIRMVPTKIGKTINAIPT
KVGRAIKLAVVDEEEEGDAPSE*

spliced messenger RNA

>Gcaud7422.t1 ID=Gcaud7422.t1|Name=Gcaud7422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:30406..31074+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACGTTGCGTTCACTGCCCCTTTGTCCATCGGGGTTTCAAAGCT
CAATGTTGGGTTTCAAGTCTGCACAGGACGAAGAAGTTCTACCACCTTGT
ACAGGAAAAGTAATGTTCGTATGGCTTCAGAGAGAATCCTTGCGAAAAAA
TCCGCTATAGTGGACTCGGTCAAGGAGCGTTTAACTGAGTCTCAAATGAT
TTTTGCAGTCCCCTTGGATGGGTTCAAAGTGGCAGACGTCTTCAAAATGA
GAAGAGAGCTCCCTGAGGGGACGATTGCTAGGACGGTCAAGAATTCTTTG
ATGCGTCGTGCAATTGCAGAATCGGAATGGGAGGTTGTCGGGGATTTTTT
GCAACAGTCTAATCTCTGGTTTTTCGTAAAGGAAGATATCAAAGGATCTG
TTAAGGCTTACGAAAGTTTCGCGAGGACGGCAAAAAAAGCTGGCATTAAG
GGTGGTGCGTTTGAGGGTGAACGATGTGATGAAGCTGGTATCCAAGCCAT
TGCAGCTTTGCCAACAAAACTTGAGCTTATAACGCAAGTTGCGGTTGGTA
TCAGAATGGTCCCCACCAAAATTGGGAAAACCATCAACGCTATTCCGACA
AAGGTCGGGAGAGCTATCAAACTGGCAGTCGTGGACGAGGAAGAGGAAGG
GGATGCACCTTCAGAGTAA

protein sequence of Gcaud7422.t1

>Gcaud7422.t1 ID=Gcaud7422.t1|Name=Gcaud7422.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=223bp
MENVAFTAPLSIGVSKLNVGFQVCTGRRSSTTLYRKSNVRMASERILAKK
SAIVDSVKERLTESQMIFAVPLDGFKVADVFKMRRELPEGTIARTVKNSL
MRRAIAESEWEVVGDFLQQSNLWFFVKEDIKGSVKAYESFARTAKKAGIK
GGAFEGERCDEAGIQAIAALPTKLELITQVAVGIRMVPTKIGKTINAIPT
KVGRAIKLAVVDEEEEGDAPSE*

mRNA from alignment at NODE_10_length_87931_cov_4.732901:30406..31074+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7422.t1 ID=Gcaud7422.t1|Name=Gcaud7422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:30406..31074+ (Gracilaria caudata M_176_S67 male)
ATGGAAAACGTTGCGTTCACTGCCCCTTTGTCCATCGGGGTTTCAAAGCT
CAATGTTGGGTTTCAAGTCTGCACAGGACGAAGAAGTTCTACCACCTTGT
ACAGGAAAAGTAATGTTCGTATGGCTTCAGAGAGAATCCTTGCGAAAAAA
TCCGCTATAGTGGACTCGGTCAAGGAGCGTTTAACTGAGTCTCAAATGAT
TTTTGCAGTCCCCTTGGATGGGTTCAAAGTGGCAGACGTCTTCAAAATGA
GAAGAGAGCTCCCTGAGGGGACGATTGCTAGGACGGTCAAGAATTCTTTG
ATGCGTCGTGCAATTGCAGAATCGGAATGGGAGGTTGTCGGGGATTTTTT
GCAACAGTCTAATCTCTGGTTTTTCGTAAAGGAAGATATCAAAGGATCTG
TTAAGGCTTACGAAAGTTTCGCGAGGACGGCAAAAAAAGCTGGCATTAAG
GGTGGTGCGTTTGAGGGTGAACGATGTGATGAAGCTGGTATCCAAGCCAT
TGCAGCTTTGCCAACAAAACTTGAGCTTATAACGCAAGTTGCGGTTGGTA
TCAGAATGGTCCCCACCAAAATTGGGAAAACCATCAACGCTATTCCGACA
AAGGTCGGGAGAGCTATCAAACTGGCAGTCGTGGACGAGGAAGAGGAAGG
GGATGCACCTTCAGAGTAA

Coding sequence (CDS) from alignment at NODE_10_length_87931_cov_4.732901:30406..31074+

>Gcaud7422.t1 ID=Gcaud7422.t1|Name=Gcaud7422.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=669bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:30406..31074+ (Gracilaria caudata M_176_S67 male)
ATGGAAAACGTTGCGTTCACTGCCCCTTTGTCCATCGGGGTTTCAAAGCT
CAATGTTGGGTTTCAAGTCTGCACAGGACGAAGAAGTTCTACCACCTTGT
ACAGGAAAAGTAATGTTCGTATGGCTTCAGAGAGAATCCTTGCGAAAAAA
TCCGCTATAGTGGACTCGGTCAAGGAGCGTTTAACTGAGTCTCAAATGAT
TTTTGCAGTCCCCTTGGATGGGTTCAAAGTGGCAGACGTCTTCAAAATGA
GAAGAGAGCTCCCTGAGGGGACGATTGCTAGGACGGTCAAGAATTCTTTG
ATGCGTCGTGCAATTGCAGAATCGGAATGGGAGGTTGTCGGGGATTTTTT
GCAACAGTCTAATCTCTGGTTTTTCGTAAAGGAAGATATCAAAGGATCTG
TTAAGGCTTACGAAAGTTTCGCGAGGACGGCAAAAAAAGCTGGCATTAAG
GGTGGTGCGTTTGAGGGTGAACGATGTGATGAAGCTGGTATCCAAGCCAT
TGCAGCTTTGCCAACAAAACTTGAGCTTATAACGCAAGTTGCGGTTGGTA
TCAGAATGGTCCCCACCAAAATTGGGAAAACCATCAACGCTATTCCGACA
AAGGTCGGGAGAGCTATCAAACTGGCAGTCGTGGACGAGGAAGAGGAAGG
GGATGCACCTTCAGAGTAA