Gcaud7418.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7418.t1
Unique Name	Gcaud7418.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_10_length_87931_cov_4.732901	contig	NODE_10_length_87931_cov_4.732901:22484..23914 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707519.1
Preferred name	DLAT
PFAMs	2-oxoacid_dh,Biotin_lipoyl,E3_binding
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC02742,RC02857
KEGG ko	ko:K00627
KEGG Reaction	R00209,R02569
KEGG Pathway	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00307
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0004742,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007610,GO:0007625,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016407,GO:0016417,GO:0016418,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030431,GO:0030523,GO:0031974,GO:0032501,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036094,GO:0042802,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0097159,GO:0098798,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
Evalue	5.09e-138
EggNOG OGs	COG0508@1\|root,KOG0557@2759\|Eukaryota
EC	2.3.1.12
Description	dihydrolipoyllysine-residue acetyltransferase activity
COG category	C
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7418	Gcaud7418	Gracilaria caudata M_176_S67 male	gene	NODE_10_length_87931_cov_4.732901 22484..23914 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7418.t1	Gcaud7418.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_10_length_87931_cov_4.732901 22484..23914 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7418.t1.stop1	Gcaud7418.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_10_length_87931_cov_4.732901 22484..22486 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7418.t1.CDS1	Gcaud7418.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 22484..23602 -
Gcaud7418.t1.CDS2	Gcaud7418.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 23759..23914 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7418.t1.exon1	Gcaud7418.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 22484..23602 -
Gcaud7418.t1.exon2	Gcaud7418.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 23759..23914 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7418.t1.intron1	Gcaud7418.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_10_length_87931_cov_4.732901 23603..23758 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7418.t1.start1	Gcaud7418.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_10_length_87931_cov_4.732901 23912..23914 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_10_length_87931_cov_4.732901:22484..23914-
coding sequence from alignment at NODE_10_length_87931_cov_4.732901:22484..23914-

mRNA sequence

>Gcaud7418.t1 ID=Gcaud7418.t1|Name=Gcaud7418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=425bp
MPALSPTMEVGTIQEWKKKVGDEIEGGEVIAEIETDKATRSYEYNDDGYL
AKVFFEDGAADVPVGVPVAIVVEEQEDIEAFKDYVPDDTAPEAAPEAPPQ
EPTPEPQETPSTPPVTKSPGLPTGAAVASQLTGARVLASPLARVTAANAG
LSLKSIPGTGPGGRVLAADVEDALVHGVPQPVEPSVGHLPGMPMYTDVEV
SKYKRVTAERLLQSKQTIPHYYLTVECEVDKMLELRSAINAKAKDGEYKI
SVNDFVVKAAAAALRKVPEVNSQWMGDKIRTYHAADISIAVQTEQGLITP
IVKDADRKGLKEISNDVKQLAAKARENALAPEEFMGGTFTISNLGMFGVS
SFSAIVNPPQAAILAVGNSEKKVVPDESSLNGYGTRTVMSVTLSCDHRVV
DGAVGAQWLAYFKSCLEDPVNIIM*

spliced messenger RNA

>Gcaud7418.t1 ID=Gcaud7418.t1|Name=Gcaud7418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:22484..23914- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCTTATCTCCGACGATGGAAGTCGGGACTATTCAGGAATGGAA
AAAGAAGGTTGGGGACGAAATCGAAGGTGGAGAGGTAATTGCAGAGATCG
AAACCGACAAAGCGACCCGATCATATGAATACAATGATGATGGATACCTC
GCGAAGGTATTCTTTGAGGACGGTGCTGCAGATGTTCCTGTTGGAGTACC
AGTGGCAATTGTTGTAGAAGAACAGGAAGATATCGAGGCCTTCAAGGACT
ATGTTCCAGATGATACCGCTCCAGAGGCCGCACCAGAAGCCCCGCCACAA
GAGCCAACGCCTGAACCTCAGGAAACACCTTCGACTCCACCCGTTACAAA
ATCGCCTGGGCTTCCTACAGGGGCAGCAGTCGCATCCCAATTGACGGGTG
CAAGAGTTTTGGCGTCCCCTTTAGCACGCGTCACTGCTGCGAATGCGGGT
TTGTCTCTCAAATCAATTCCTGGAACTGGACCAGGGGGTCGTGTTCTGGC
GGCGGATGTTGAGGACGCACTGGTCCATGGCGTTCCGCAACCAGTTGAAC
CAAGTGTGGGTCATTTACCAGGAATGCCAATGTATACCGACGTTGAAGTT
TCCAAATATAAGCGAGTCACGGCTGAACGGCTGCTTCAATCAAAGCAGAC
CATACCACATTACTATCTAACTGTCGAGTGCGAAGTCGATAAAATGTTGG
AGTTGCGCAGTGCAATCAATGCAAAGGCGAAAGACGGCGAATATAAGATA
AGTGTGAATGACTTCGTCGTGAAGGCGGCTGCTGCCGCCCTACGTAAAGT
GCCGGAAGTGAACTCACAATGGATGGGAGATAAAATTAGAACTTATCACG
CTGCGGACATATCCATTGCAGTACAGACGGAACAAGGATTAATTACCCCA
ATCGTCAAGGACGCAGATCGAAAAGGATTGAAAGAGATTTCAAATGATGT
TAAGCAGCTGGCAGCAAAGGCAAGGGAAAACGCACTGGCACCTGAAGAGT
TCATGGGTGGTACTTTCACCATCAGCAATCTTGGCATGTTTGGAGTGAGC
AGCTTCTCAGCAATTGTGAACCCGCCGCAAGCGGCCATTTTGGCAGTAGG
AAACTCGGAAAAAAAGGTTGTGCCAGATGAATCATCCCTGAATGGCTATG
GAACTAGAACAGTCATGAGCGTAACATTGAGCTGTGACCATCGTGTTGTA
GATGGAGCCGTAGGTGCGCAGTGGCTTGCATACTTCAAATCATGTCTGGA
AGACCCCGTGAATATTATCATGTGA

protein sequence of Gcaud7418.t1

>Gcaud7418.t1 ID=Gcaud7418.t1|Name=Gcaud7418.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=425bp
MPALSPTMEVGTIQEWKKKVGDEIEGGEVIAEIETDKATRSYEYNDDGYL
AKVFFEDGAADVPVGVPVAIVVEEQEDIEAFKDYVPDDTAPEAAPEAPPQ
EPTPEPQETPSTPPVTKSPGLPTGAAVASQLTGARVLASPLARVTAANAG
LSLKSIPGTGPGGRVLAADVEDALVHGVPQPVEPSVGHLPGMPMYTDVEV
SKYKRVTAERLLQSKQTIPHYYLTVECEVDKMLELRSAINAKAKDGEYKI
SVNDFVVKAAAAALRKVPEVNSQWMGDKIRTYHAADISIAVQTEQGLITP
IVKDADRKGLKEISNDVKQLAAKARENALAPEEFMGGTFTISNLGMFGVS
SFSAIVNPPQAAILAVGNSEKKVVPDESSLNGYGTRTVMSVTLSCDHRVV
DGAVGAQWLAYFKSCLEDPVNIIM*

mRNA from alignment at NODE_10_length_87931_cov_4.732901:22484..23914-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7418.t1 ID=Gcaud7418.t1|Name=Gcaud7418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:22484..23914- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCTTATCTCCGACGATGGAAGTCGGGACTATTCAGGAATGGAA
AAAGAAGGTTGGGGACGAAATCGAAGGTGGAGAGGTAATTGCAGAGATCG
AAACCGACAAAGCGACCCGATCATATGAATACAATGATGATGGATACCTC
GCGAAGGTAAGGTGAGATCTTTTTGTCTTATTGATGCTGCTCTTCGAATG
ATGGCAACAATTGAACTTCAGATCGTTGCAGTAATTGCTTCTTTACACTC
CGAAATCACGAAACATGTACTTGAAGCTAACTCACGGATAACAAAATCTC
TTGTTCGCGTAGGTATTCTTTGAGGACGGTGCTGCAGATGTTCCTGTTGG
AGTACCAGTGGCAATTGTTGTAGAAGAACAGGAAGATATCGAGGCCTTCA
AGGACTATGTTCCAGATGATACCGCTCCAGAGGCCGCACCAGAAGCCCCG
CCACAAGAGCCAACGCCTGAACCTCAGGAAACACCTTCGACTCCACCCGT
TACAAAATCGCCTGGGCTTCCTACAGGGGCAGCAGTCGCATCCCAATTGA
CGGGTGCAAGAGTTTTGGCGTCCCCTTTAGCACGCGTCACTGCTGCGAAT
GCGGGTTTGTCTCTCAAATCAATTCCTGGAACTGGACCAGGGGGTCGTGT
TCTGGCGGCGGATGTTGAGGACGCACTGGTCCATGGCGTTCCGCAACCAG
TTGAACCAAGTGTGGGTCATTTACCAGGAATGCCAATGTATACCGACGTT
GAAGTTTCCAAATATAAGCGAGTCACGGCTGAACGGCTGCTTCAATCAAA
GCAGACCATACCACATTACTATCTAACTGTCGAGTGCGAAGTCGATAAAA
TGTTGGAGTTGCGCAGTGCAATCAATGCAAAGGCGAAAGACGGCGAATAT
AAGATAAGTGTGAATGACTTCGTCGTGAAGGCGGCTGCTGCCGCCCTACG
TAAAGTGCCGGAAGTGAACTCACAATGGATGGGAGATAAAATTAGAACTT
ATCACGCTGCGGACATATCCATTGCAGTACAGACGGAACAAGGATTAATT
ACCCCAATCGTCAAGGACGCAGATCGAAAAGGATTGAAAGAGATTTCAAA
TGATGTTAAGCAGCTGGCAGCAAAGGCAAGGGAAAACGCACTGGCACCTG
AAGAGTTCATGGGTGGTACTTTCACCATCAGCAATCTTGGCATGTTTGGA
GTGAGCAGCTTCTCAGCAATTGTGAACCCGCCGCAAGCGGCCATTTTGGC
AGTAGGAAACTCGGAAAAAAAGGTTGTGCCAGATGAATCATCCCTGAATG
GCTATGGAACTAGAACAGTCATGAGCGTAACATTGAGCTGTGACCATCGT
GTTGTAGATGGAGCCGTAGGTGCGCAGTGGCTTGCATACTTCAAATCATG
TCTGGAAGACCCCGTGAATATTATCATGTGA

Coding sequence (CDS) from alignment at NODE_10_length_87931_cov_4.732901:22484..23914-

>Gcaud7418.t1 ID=Gcaud7418.t1|Name=Gcaud7418.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1275bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:22484..23914- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCTTATCTCCGACGATGGAAGTCGGGACTATTCAGGAATGGAA
AAAGAAGGTTGGGGACGAAATCGAAGGTGGAGAGGTAATTGCAGAGATCG
AAACCGACAAAGCGACCCGATCATATGAATACAATGATGATGGATACCTC
GCGAAGGTATTCTTTGAGGACGGTGCTGCAGATGTTCCTGTTGGAGTACC
AGTGGCAATTGTTGTAGAAGAACAGGAAGATATCGAGGCCTTCAAGGACT
ATGTTCCAGATGATACCGCTCCAGAGGCCGCACCAGAAGCCCCGCCACAA
GAGCCAACGCCTGAACCTCAGGAAACACCTTCGACTCCACCCGTTACAAA
ATCGCCTGGGCTTCCTACAGGGGCAGCAGTCGCATCCCAATTGACGGGTG
CAAGAGTTTTGGCGTCCCCTTTAGCACGCGTCACTGCTGCGAATGCGGGT
TTGTCTCTCAAATCAATTCCTGGAACTGGACCAGGGGGTCGTGTTCTGGC
GGCGGATGTTGAGGACGCACTGGTCCATGGCGTTCCGCAACCAGTTGAAC
CAAGTGTGGGTCATTTACCAGGAATGCCAATGTATACCGACGTTGAAGTT
TCCAAATATAAGCGAGTCACGGCTGAACGGCTGCTTCAATCAAAGCAGAC
CATACCACATTACTATCTAACTGTCGAGTGCGAAGTCGATAAAATGTTGG
AGTTGCGCAGTGCAATCAATGCAAAGGCGAAAGACGGCGAATATAAGATA
AGTGTGAATGACTTCGTCGTGAAGGCGGCTGCTGCCGCCCTACGTAAAGT
GCCGGAAGTGAACTCACAATGGATGGGAGATAAAATTAGAACTTATCACG
CTGCGGACATATCCATTGCAGTACAGACGGAACAAGGATTAATTACCCCA
ATCGTCAAGGACGCAGATCGAAAAGGATTGAAAGAGATTTCAAATGATGT
TAAGCAGCTGGCAGCAAAGGCAAGGGAAAACGCACTGGCACCTGAAGAGT
TCATGGGTGGTACTTTCACCATCAGCAATCTTGGCATGTTTGGAGTGAGC
AGCTTCTCAGCAATTGTGAACCCGCCGCAAGCGGCCATTTTGGCAGTAGG
AAACTCGGAAAAAAAGGTTGTGCCAGATGAATCATCCCTGAATGGCTATG
GAACTAGAACAGTCATGAGCGTAACATTGAGCTGTGACCATCGTGTTGTA
GATGGAGCCGTAGGTGCGCAGTGGCTTGCATACTTCAAATCATGTCTGGA
AGACCCCGTGAATATTATCATGTGA