Gcaud741.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud741.t1
Unique NameGcaud741.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_978_length_15578_cov_4.427843contigNODE_978_length_15578_cov_4.427843:9911..10537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud741Gcaud741Gracilaria caudata M_176_S67 malegeneNODE_978_length_15578_cov_4.427843 9911..10537 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud741.t1.stop1Gcaud741.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_978_length_15578_cov_4.427843 9911..9913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud741.t1.CDS1Gcaud741.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_978_length_15578_cov_4.427843 9911..10537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud741.t1.exon1Gcaud741.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_978_length_15578_cov_4.427843 9911..10537 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud741.t1.start1Gcaud741.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_978_length_15578_cov_4.427843 10535..10537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud741.t1Gcaud741.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_978_length_15578_cov_4.427843 9911..10537 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud741.t1 ID=Gcaud741.t1|Name=Gcaud741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=209bp
MAAAKAVNAVAAPSFNILRSIAALRPHITPVSRLASLDITRTHLSIALSD
ETQHQAVPFGILARTGLPSADAKILSSAFSRMPEQHSQSQNIHALIVGVS
PIEPDTSISYTSDLLQHVDFLPNLNAILFYSEAHALQHAIHSQHDVLNAL
KLIPQNLETRKQKRFARAMNPRISELDLANSVQSRAQLSPTDILQAVLRD
LNNVEHKQ*
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spliced messenger RNA

>Gcaud741.t1 ID=Gcaud741.t1|Name=Gcaud741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=627bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:9911..10537- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAGCCAAAGCAGTGAACGCCGTCGCTGCGCCGTCGTTCAACAT
CCTCCGCTCCATCGCCGCGCTCCGACCGCACATAACGCCCGTCTCTCGTT
TGGCATCTCTAGACATAACGCGCACCCATCTGTCCATTGCGCTCTCCGAT
GAAACTCAACACCAAGCAGTTCCGTTCGGCATCCTGGCGCGCACGGGACT
GCCTTCAGCCGACGCCAAGATACTCTCGTCAGCGTTTTCGAGAATGCCGG
AACAGCACAGTCAGAGTCAAAACATCCACGCCTTGATCGTAGGTGTGAGT
CCCATTGAACCGGACACCAGTATATCATATACATCGGATTTGTTACAACA
TGTTGATTTCCTACCGAACCTCAACGCGATCCTGTTCTATTCCGAGGCAC
ATGCACTTCAACATGCTATACACTCTCAACACGATGTTCTTAACGCGCTC
AAACTCATCCCGCAAAACCTGGAAACGCGCAAGCAAAAACGTTTCGCAAG
GGCCATGAATCCCCGAATATCCGAACTCGACTTGGCAAATTCCGTGCAGT
CACGCGCCCAACTCAGTCCCACCGACATTCTACAAGCCGTATTACGTGAC
TTGAACAATGTCGAGCATAAACAATAA
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protein sequence of Gcaud741.t1

>Gcaud741.t1 ID=Gcaud741.t1|Name=Gcaud741.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=209bp
MAAAKAVNAVAAPSFNILRSIAALRPHITPVSRLASLDITRTHLSIALSD
ETQHQAVPFGILARTGLPSADAKILSSAFSRMPEQHSQSQNIHALIVGVS
PIEPDTSISYTSDLLQHVDFLPNLNAILFYSEAHALQHAIHSQHDVLNAL
KLIPQNLETRKQKRFARAMNPRISELDLANSVQSRAQLSPTDILQAVLRD
LNNVEHKQ*
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mRNA from alignment at NODE_978_length_15578_cov_4.427843:9911..10537-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud741.t1 ID=Gcaud741.t1|Name=Gcaud741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=627bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:9911..10537- (Gracilaria caudata M_176_S67 male)
ATGGCTGCAGCCAAAGCAGTGAACGCCGTCGCTGCGCCGTCGTTCAACAT
CCTCCGCTCCATCGCCGCGCTCCGACCGCACATAACGCCCGTCTCTCGTT
TGGCATCTCTAGACATAACGCGCACCCATCTGTCCATTGCGCTCTCCGAT
GAAACTCAACACCAAGCAGTTCCGTTCGGCATCCTGGCGCGCACGGGACT
GCCTTCAGCCGACGCCAAGATACTCTCGTCAGCGTTTTCGAGAATGCCGG
AACAGCACAGTCAGAGTCAAAACATCCACGCCTTGATCGTAGGTGTGAGT
CCCATTGAACCGGACACCAGTATATCATATACATCGGATTTGTTACAACA
TGTTGATTTCCTACCGAACCTCAACGCGATCCTGTTCTATTCCGAGGCAC
ATGCACTTCAACATGCTATACACTCTCAACACGATGTTCTTAACGCGCTC
AAACTCATCCCGCAAAACCTGGAAACGCGCAAGCAAAAACGTTTCGCAAG
GGCCATGAATCCCCGAATATCCGAACTCGACTTGGCAAATTCCGTGCAGT
CACGCGCCCAACTCAGTCCCACCGACATTCTACAAGCCGTATTACGTGAC
TTGAACAATGTCGAGCATAAACAATAA
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Coding sequence (CDS) from alignment at NODE_978_length_15578_cov_4.427843:9911..10537-

>Gcaud741.t1 ID=Gcaud741.t1|Name=Gcaud741.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=627bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:9911..10537- (Gracilaria caudata M_176_S67 male)
ATGGCTGCAGCCAAAGCAGTGAACGCCGTCGCTGCGCCGTCGTTCAACAT
CCTCCGCTCCATCGCCGCGCTCCGACCGCACATAACGCCCGTCTCTCGTT
TGGCATCTCTAGACATAACGCGCACCCATCTGTCCATTGCGCTCTCCGAT
GAAACTCAACACCAAGCAGTTCCGTTCGGCATCCTGGCGCGCACGGGACT
GCCTTCAGCCGACGCCAAGATACTCTCGTCAGCGTTTTCGAGAATGCCGG
AACAGCACAGTCAGAGTCAAAACATCCACGCCTTGATCGTAGGTGTGAGT
CCCATTGAACCGGACACCAGTATATCATATACATCGGATTTGTTACAACA
TGTTGATTTCCTACCGAACCTCAACGCGATCCTGTTCTATTCCGAGGCAC
ATGCACTTCAACATGCTATACACTCTCAACACGATGTTCTTAACGCGCTC
AAACTCATCCCGCAAAACCTGGAAACGCGCAAGCAAAAACGTTTCGCAAG
GGCCATGAATCCCCGAATATCCGAACTCGACTTGGCAAATTCCGTGCAGT
CACGCGCCCAACTCAGTCCCACCGACATTCTACAAGCCGTATTACGTGAC
TTGAACAATGTCGAGCATAAACAATAA
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