Gcaud7406.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7406.t1
Unique Name	Gcaud7406.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1475_length_10362_cov_4.045468	contig	NODE_1475_length_10362_cov_4.045468:8..1054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7406	Gcaud7406	Gracilaria caudata M_176_S67 male	gene	NODE_1475_length_10362_cov_4.045468 8..1054 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7406.t1.start1	Gcaud7406.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1475_length_10362_cov_4.045468 8..10 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7406.t1.CDS1	Gcaud7406.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1475_length_10362_cov_4.045468 8..1054 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7406.t1.exon1	Gcaud7406.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1475_length_10362_cov_4.045468 8..1054 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7406.t1.stop1	Gcaud7406.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1475_length_10362_cov_4.045468 1052..1054 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7406.t1	Gcaud7406.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1475_length_10362_cov_4.045468 8..1054 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1475_length_10362_cov_4.045468:8..1054+
coding sequence from alignment at NODE_1475_length_10362_cov_4.045468:8..1054+

mRNA sequence

>Gcaud7406.t1 ID=Gcaud7406.t1|Name=Gcaud7406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=349bp
MAEDLPTANADTTVPPPVAEEPIKQTRIHTGTPFLEAAGLLLIWSILVIN
EGALRFNALTNNPYPSLGDFQFDRVRIGVYFFGGLFEVIFGFLGLFVGGA
ALVFRFYNDMLTKACMVTQSILGWYVFTVFVFAQPASRAAEVGEDGLLGL
SQGLSRFLITLGIFTSFHFCLALQGGQFVFFARLVAAATDTNFLMQKSGE
KMRAMFWNGNIALAGFWTLLTGCILEARVDESTLDLTPFEFPPNVGREPG
LTVFVGLVVMLYGLYGMLTAVVSALPTGMAYYISGMVVYVLAFLNFTIVQ
FGLLDGPNGTGVALHSGLVFMVMALGPYFTWRASQSTEQKVVEEEHVV*

spliced messenger RNA

>Gcaud7406.t1 ID=Gcaud7406.t1|Name=Gcaud7406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_1475_length_10362_cov_4.045468:8..1054+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGGATCTTCCCACCGCCAACGCCGACACCACCGTGCCGCCGCC
GGTGGCCGAGGAGCCCATAAAGCAGACGCGCATCCACACCGGCACGCCCT
TTCTGGAGGCCGCCGGGCTGCTATTGATATGGAGCATTCTGGTCATTAAC
GAGGGCGCGCTTCGATTCAACGCGCTCACCAATAATCCATACCCGAGTCT
GGGCGACTTCCAATTTGACCGCGTGCGCATTGGCGTGTACTTTTTCGGCG
GTCTGTTCGAGGTCATCTTCGGTTTCCTGGGCCTGTTTGTGGGCGGCGCC
GCGCTGGTGTTCCGCTTCTACAACGACATGCTCACCAAGGCGTGCATGGT
CACGCAGAGCATCCTGGGCTGGTACGTGTTCACTGTGTTTGTGTTTGCAC
AACCGGCCTCTCGCGCCGCCGAAGTTGGCGAGGATGGATTGCTGGGCTTG
TCGCAGGGTCTTTCTCGTTTCCTCATCACGCTGGGTATCTTCACGTCGTT
CCACTTCTGTCTGGCGCTGCAGGGCGGACAGTTTGTGTTCTTTGCGCGCC
TGGTGGCCGCCGCCACCGACACCAACTTCCTCATGCAGAAGTCGGGCGAG
AAGATGAGGGCCATGTTTTGGAACGGAAACATCGCCCTGGCGGGCTTCTG
GACGTTGCTCACGGGCTGCATTCTGGAGGCTCGCGTGGACGAATCCACGC
TGGACCTCACCCCCTTTGAGTTCCCGCCCAACGTGGGGCGCGAGCCGGGC
TTGACTGTGTTTGTGGGGCTGGTGGTGATGCTGTACGGGCTGTACGGCAT
GCTGACGGCGGTGGTGTCGGCGCTGCCCACGGGCATGGCGTACTACATCT
CCGGAATGGTGGTGTACGTGCTGGCGTTCCTGAACTTCACCATTGTGCAG
TTCGGGCTGCTGGACGGGCCGAACGGCACGGGCGTGGCGCTGCACAGCGG
GCTGGTGTTCATGGTGATGGCGCTGGGCCCGTACTTCACGTGGCGCGCGT
CGCAGAGCACggagcagaaggtggtggaggaggagcacgtggtgtga

protein sequence of Gcaud7406.t1

>Gcaud7406.t1 ID=Gcaud7406.t1|Name=Gcaud7406.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=349bp
MAEDLPTANADTTVPPPVAEEPIKQTRIHTGTPFLEAAGLLLIWSILVIN
EGALRFNALTNNPYPSLGDFQFDRVRIGVYFFGGLFEVIFGFLGLFVGGA
ALVFRFYNDMLTKACMVTQSILGWYVFTVFVFAQPASRAAEVGEDGLLGL
SQGLSRFLITLGIFTSFHFCLALQGGQFVFFARLVAAATDTNFLMQKSGE
KMRAMFWNGNIALAGFWTLLTGCILEARVDESTLDLTPFEFPPNVGREPG
LTVFVGLVVMLYGLYGMLTAVVSALPTGMAYYISGMVVYVLAFLNFTIVQ
FGLLDGPNGTGVALHSGLVFMVMALGPYFTWRASQSTEQKVVEEEHVV*

mRNA from alignment at NODE_1475_length_10362_cov_4.045468:8..1054+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7406.t1 ID=Gcaud7406.t1|Name=Gcaud7406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_1475_length_10362_cov_4.045468:8..1054+ (Gracilaria caudata M_176_S67 male)
ATGGCTGAGGATCTTCCCACCGCCAACGCCGACACCACCGTGCCGCCGCC
GGTGGCCGAGGAGCCCATAAAGCAGACGCGCATCCACACCGGCACGCCCT
TTCTGGAGGCCGCCGGGCTGCTATTGATATGGAGCATTCTGGTCATTAAC
GAGGGCGCGCTTCGATTCAACGCGCTCACCAATAATCCATACCCGAGTCT
GGGCGACTTCCAATTTGACCGCGTGCGCATTGGCGTGTACTTTTTCGGCG
GTCTGTTCGAGGTCATCTTCGGTTTCCTGGGCCTGTTTGTGGGCGGCGCC
GCGCTGGTGTTCCGCTTCTACAACGACATGCTCACCAAGGCGTGCATGGT
CACGCAGAGCATCCTGGGCTGGTACGTGTTCACTGTGTTTGTGTTTGCAC
AACCGGCCTCTCGCGCCGCCGAAGTTGGCGAGGATGGATTGCTGGGCTTG
TCGCAGGGTCTTTCTCGTTTCCTCATCACGCTGGGTATCTTCACGTCGTT
CCACTTCTGTCTGGCGCTGCAGGGCGGACAGTTTGTGTTCTTTGCGCGCC
TGGTGGCCGCCGCCACCGACACCAACTTCCTCATGCAGAAGTCGGGCGAG
AAGATGAGGGCCATGTTTTGGAACGGAAACATCGCCCTGGCGGGCTTCTG
GACGTTGCTCACGGGCTGCATTCTGGAGGCTCGCGTGGACGAATCCACGC
TGGACCTCACCCCCTTTGAGTTCCCGCCCAACGTGGGGCGCGAGCCGGGC
TTGACTGTGTTTGTGGGGCTGGTGGTGATGCTGTACGGGCTGTACGGCAT
GCTGACGGCGGTGGTGTCGGCGCTGCCCACGGGCATGGCGTACTACATCT
CCGGAATGGTGGTGTACGTGCTGGCGTTCCTGAACTTCACCATTGTGCAG
TTCGGGCTGCTGGACGGGCCGAACGGCACGGGCGTGGCGCTGCACAGCGG
GCTGGTGTTCATGGTGATGGCGCTGGGCCCGTACTTCACGTGGCGCGCGT
CGCAGAGCACggagcagaaggtggtggaggaggagcacgtggtgtga

Coding sequence (CDS) from alignment at NODE_1475_length_10362_cov_4.045468:8..1054+

>Gcaud7406.t1 ID=Gcaud7406.t1|Name=Gcaud7406.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1047bp|location=Sequence derived from alignment at NODE_1475_length_10362_cov_4.045468:8..1054+ (Gracilaria caudata M_176_S67 male)
ATGGCTGAGGATCTTCCCACCGCCAACGCCGACACCACCGTGCCGCCGCC
GGTGGCCGAGGAGCCCATAAAGCAGACGCGCATCCACACCGGCACGCCCT
TTCTGGAGGCCGCCGGGCTGCTATTGATATGGAGCATTCTGGTCATTAAC
GAGGGCGCGCTTCGATTCAACGCGCTCACCAATAATCCATACCCGAGTCT
GGGCGACTTCCAATTTGACCGCGTGCGCATTGGCGTGTACTTTTTCGGCG
GTCTGTTCGAGGTCATCTTCGGTTTCCTGGGCCTGTTTGTGGGCGGCGCC
GCGCTGGTGTTCCGCTTCTACAACGACATGCTCACCAAGGCGTGCATGGT
CACGCAGAGCATCCTGGGCTGGTACGTGTTCACTGTGTTTGTGTTTGCAC
AACCGGCCTCTCGCGCCGCCGAAGTTGGCGAGGATGGATTGCTGGGCTTG
TCGCAGGGTCTTTCTCGTTTCCTCATCACGCTGGGTATCTTCACGTCGTT
CCACTTCTGTCTGGCGCTGCAGGGCGGACAGTTTGTGTTCTTTGCGCGCC
TGGTGGCCGCCGCCACCGACACCAACTTCCTCATGCAGAAGTCGGGCGAG
AAGATGAGGGCCATGTTTTGGAACGGAAACATCGCCCTGGCGGGCTTCTG
GACGTTGCTCACGGGCTGCATTCTGGAGGCTCGCGTGGACGAATCCACGC
TGGACCTCACCCCCTTTGAGTTCCCGCCCAACGTGGGGCGCGAGCCGGGC
TTGACTGTGTTTGTGGGGCTGGTGGTGATGCTGTACGGGCTGTACGGCAT
GCTGACGGCGGTGGTGTCGGCGCTGCCCACGGGCATGGCGTACTACATCT
CCGGAATGGTGGTGTACGTGCTGGCGTTCCTGAACTTCACCATTGTGCAG
TTCGGGCTGCTGGACGGGCCGAACGGCACGGGCGTGGCGCTGCACAGCGG
GCTGGTGTTCATGGTGATGGCGCTGGGCCCGTACTTCACGTGGCGCGCGT
CGCAGAGCACggagcagaaggtggtggaggaggagcacgtggtgtga