Gcaud7404.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7404.t1
Unique Name	Gcaud7404.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1113_length_13659_cov_4.120357	contig	NODE_1113_length_13659_cov_4.120357:11013..12062 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705248.1
Preferred name	GS1
PFAMs	Gln-synt_C,Gln-synt_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010,RC02798
KEGG ko	ko:K01915
KEGG Reaction	R00253
KEGG Pathway	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
GOs	GO:0003674,GO:0003735,GO:0003824,GO:0004356,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006541,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009064,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010150,GO:0016020,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019676,GO:0019740,GO:0019752,GO:0022626,GO:0030054,GO:0030312,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0042126,GO:0042128,GO:0042221,GO:0042651,GO:0042788,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0055035,GO:0055044,GO:0071704,GO:0071941,GO:0071944,GO:0090693,GO:0099402,GO:1901564,GO:1901605,GO:1990904,GO:2001057
Evalue	5.13e-166
EggNOG OGs	COG0174@1\|root,KOG0683@2759\|Eukaryota
EC	6.3.1.2
Description	glutamine biosynthetic process
COG category	E
BRITE	ko00000,ko00001,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7404	Gcaud7404	Gracilaria caudata M_176_S67 male	gene	NODE_1113_length_13659_cov_4.120357 11013..12062 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7404.t1.start1	Gcaud7404.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1113_length_13659_cov_4.120357 11013..11015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7404.t1.CDS1	Gcaud7404.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1113_length_13659_cov_4.120357 11013..12062 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7404.t1.exon1	Gcaud7404.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1113_length_13659_cov_4.120357 11013..12062 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7404.t1.stop1	Gcaud7404.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1113_length_13659_cov_4.120357 12060..12062 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7404.t1	Gcaud7404.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1113_length_13659_cov_4.120357 11013..12062 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1113_length_13659_cov_4.120357:11013..12062+
coding sequence from alignment at NODE_1113_length_13659_cov_4.120357:11013..12062+

mRNA sequence

>Gcaud7404.t1 ID=Gcaud7404.t1|Name=Gcaud7404.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=350bp
MSCIDSLLNLSLESGCIAEYVWIDGFNKTRGKARYLKSAPSSPADLPDWN
YDGSSTGQAPGANSEVIIKPQAIFPDPFRGAPHILVMCDTYTPEGAPLPT
NTRYECAMVMDRAKDLEPWFGLEQEYFLIDPNTEKPLGFPKDGEPAPQGP
YYCGVSGSKVYGRDVVDAHFKACVYAGLKISGINAEVAPGQWEFQIGPAV
GIEEGDHLWMARYLLERIAEMKGLDVDYNPKPVKGDWNGSGCHANFSTKP
MREEGGYRNFIEPALEKLRLKHKEHIAAYGTGNEERLTGKHETASIEEFK
WGVADRGASCRVGSDTKEKGYGYFEDRRPAGNCDPYIVTRMLVQTCCLE*

spliced messenger RNA

>Gcaud7404.t1 ID=Gcaud7404.t1|Name=Gcaud7404.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:11013..12062+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTGCATCGACTCGCTGCTCAACCTCTCCCTCGAATCCGGCTGCAT
TGCCGAGTATGTCTGGATCGACGGCTTCAACAAGACTCGCGGAAAGGCCC
GATATCTCAAATCCGCACCATCATCTCCGGCCGATCTACCCGACTGGAAC
TACGATGGAAGTTCCACCGGCCAGGCACCCGGAGCCAACTCGGAGGTAAT
CATCAAGCCGCAAGCCATCTTCCCCGATCCATTCCGCGGCGCTCCGCACA
TCCTGGTCATGTGTGACACATACACACCGGAAGGTGCGCCGCTTCCCACC
AACACGCGCTACGAATGCGCCATGGTCATGGACCGCGCCAAGGATCTCGA
GCCGTGGTTCGGACTGGAACAGGAATACTTTCTGATTGACCCCAACACCG
AGAAGCCGCTGGGCTTCCCCAAGGACGGAGAACCGGCGCCACAGGGGCCG
TACTACTGCGGTGTGTCAGGCTCCAAGGTGTACGGTCGTGACGTCGTGGA
CGCGCATTTCAAGGCGTGTGTGTACGCTGGACTCAAGATTTCTGGCATTA
ATGCTGAAGTGGCGCCGGGACAGTGGGAATTCCAGATCGGCCCGGCGGTG
GGCATTGAGGAGGGCGACCATCTGTGGATGGCTCGTTACTTGCTGGAGCG
CATTGCCGAGATGAAGGGACTCGACGTCGACTACAACCCCAAACCAGTGA
AGGGGGACTGGAACGGCTCGGGTTGTCACGCCAACTTCTCCACGAAGCCG
ATGAGAGAGGAAGGTGGCTACCGAAACTTCATCGAACCGGCGCTGGAGAA
GCTGCGTCTGAAGCACAAGGAGCACATTGCCGCGTACGGCACCGGAAACG
AGGAAAGGTTGACTGGCAAGCACGAAACAGCTTCTATCGAGGAGTTCAAG
TGGGGCGTGGCCGATCGCGGTGCGTCCTGTCGTGTGGGCAGCGATACCAA
GGAGAAGGGCTACGGATACTTTGAGGACCGTCGACCGGCCGGTAACTGCG
ACCCGTACATAGTCACTAGAATGTTGGTGCAGACGTGCTGTCTGGAATGA

protein sequence of Gcaud7404.t1

>Gcaud7404.t1 ID=Gcaud7404.t1|Name=Gcaud7404.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=350bp
MSCIDSLLNLSLESGCIAEYVWIDGFNKTRGKARYLKSAPSSPADLPDWN
YDGSSTGQAPGANSEVIIKPQAIFPDPFRGAPHILVMCDTYTPEGAPLPT
NTRYECAMVMDRAKDLEPWFGLEQEYFLIDPNTEKPLGFPKDGEPAPQGP
YYCGVSGSKVYGRDVVDAHFKACVYAGLKISGINAEVAPGQWEFQIGPAV
GIEEGDHLWMARYLLERIAEMKGLDVDYNPKPVKGDWNGSGCHANFSTKP
MREEGGYRNFIEPALEKLRLKHKEHIAAYGTGNEERLTGKHETASIEEFK
WGVADRGASCRVGSDTKEKGYGYFEDRRPAGNCDPYIVTRMLVQTCCLE*

mRNA from alignment at NODE_1113_length_13659_cov_4.120357:11013..12062+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7404.t1 ID=Gcaud7404.t1|Name=Gcaud7404.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:11013..12062+ (Gracilaria caudata M_176_S67 male)
ATGTCTTGCATCGACTCGCTGCTCAACCTCTCCCTCGAATCCGGCTGCAT
TGCCGAGTATGTCTGGATCGACGGCTTCAACAAGACTCGCGGAAAGGCCC
GATATCTCAAATCCGCACCATCATCTCCGGCCGATCTACCCGACTGGAAC
TACGATGGAAGTTCCACCGGCCAGGCACCCGGAGCCAACTCGGAGGTAAT
CATCAAGCCGCAAGCCATCTTCCCCGATCCATTCCGCGGCGCTCCGCACA
TCCTGGTCATGTGTGACACATACACACCGGAAGGTGCGCCGCTTCCCACC
AACACGCGCTACGAATGCGCCATGGTCATGGACCGCGCCAAGGATCTCGA
GCCGTGGTTCGGACTGGAACAGGAATACTTTCTGATTGACCCCAACACCG
AGAAGCCGCTGGGCTTCCCCAAGGACGGAGAACCGGCGCCACAGGGGCCG
TACTACTGCGGTGTGTCAGGCTCCAAGGTGTACGGTCGTGACGTCGTGGA
CGCGCATTTCAAGGCGTGTGTGTACGCTGGACTCAAGATTTCTGGCATTA
ATGCTGAAGTGGCGCCGGGACAGTGGGAATTCCAGATCGGCCCGGCGGTG
GGCATTGAGGAGGGCGACCATCTGTGGATGGCTCGTTACTTGCTGGAGCG
CATTGCCGAGATGAAGGGACTCGACGTCGACTACAACCCCAAACCAGTGA
AGGGGGACTGGAACGGCTCGGGTTGTCACGCCAACTTCTCCACGAAGCCG
ATGAGAGAGGAAGGTGGCTACCGAAACTTCATCGAACCGGCGCTGGAGAA
GCTGCGTCTGAAGCACAAGGAGCACATTGCCGCGTACGGCACCGGAAACG
AGGAAAGGTTGACTGGCAAGCACGAAACAGCTTCTATCGAGGAGTTCAAG
TGGGGCGTGGCCGATCGCGGTGCGTCCTGTCGTGTGGGCAGCGATACCAA
GGAGAAGGGCTACGGATACTTTGAGGACCGTCGACCGGCCGGTAACTGCG
ACCCGTACATAGTCACTAGAATGTTGGTGCAGACGTGCTGTCTGGAATGA

Coding sequence (CDS) from alignment at NODE_1113_length_13659_cov_4.120357:11013..12062+

>Gcaud7404.t1 ID=Gcaud7404.t1|Name=Gcaud7404.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1050bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:11013..12062+ (Gracilaria caudata M_176_S67 male)
ATGTCTTGCATCGACTCGCTGCTCAACCTCTCCCTCGAATCCGGCTGCAT
TGCCGAGTATGTCTGGATCGACGGCTTCAACAAGACTCGCGGAAAGGCCC
GATATCTCAAATCCGCACCATCATCTCCGGCCGATCTACCCGACTGGAAC
TACGATGGAAGTTCCACCGGCCAGGCACCCGGAGCCAACTCGGAGGTAAT
CATCAAGCCGCAAGCCATCTTCCCCGATCCATTCCGCGGCGCTCCGCACA
TCCTGGTCATGTGTGACACATACACACCGGAAGGTGCGCCGCTTCCCACC
AACACGCGCTACGAATGCGCCATGGTCATGGACCGCGCCAAGGATCTCGA
GCCGTGGTTCGGACTGGAACAGGAATACTTTCTGATTGACCCCAACACCG
AGAAGCCGCTGGGCTTCCCCAAGGACGGAGAACCGGCGCCACAGGGGCCG
TACTACTGCGGTGTGTCAGGCTCCAAGGTGTACGGTCGTGACGTCGTGGA
CGCGCATTTCAAGGCGTGTGTGTACGCTGGACTCAAGATTTCTGGCATTA
ATGCTGAAGTGGCGCCGGGACAGTGGGAATTCCAGATCGGCCCGGCGGTG
GGCATTGAGGAGGGCGACCATCTGTGGATGGCTCGTTACTTGCTGGAGCG
CATTGCCGAGATGAAGGGACTCGACGTCGACTACAACCCCAAACCAGTGA
AGGGGGACTGGAACGGCTCGGGTTGTCACGCCAACTTCTCCACGAAGCCG
ATGAGAGAGGAAGGTGGCTACCGAAACTTCATCGAACCGGCGCTGGAGAA
GCTGCGTCTGAAGCACAAGGAGCACATTGCCGCGTACGGCACCGGAAACG
AGGAAAGGTTGACTGGCAAGCACGAAACAGCTTCTATCGAGGAGTTCAAG
TGGGGCGTGGCCGATCGCGGTGCGTCCTGTCGTGTGGGCAGCGATACCAA
GGAGAAGGGCTACGGATACTTTGAGGACCGTCGACCGGCCGGTAACTGCG
ACCCGTACATAGTCACTAGAATGTTGGTGCAGACGTGCTGTCTGGAATGA