Gcaud7402.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7402.t1
Unique Name	Gcaud7402.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	640

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1113_length_13659_cov_4.120357	contig	NODE_1113_length_13659_cov_4.120357:5421..7340 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_002733087.1
Max annot lvl	10224.XP_002733087.1\|-
KEGG ko	ko:K10461
Evalue	1.03e-15
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota,39PFQ@33154\|Opisthokonta,3BJW6@33208\|Metazoa,3CUSE@33213\|Bilateria
Description	regulation of kainate selective glutamate receptor activity
COG category	T
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7402	Gcaud7402	Gracilaria caudata M_176_S67 male	gene	NODE_1113_length_13659_cov_4.120357 5421..7340 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7402.t1.start1	Gcaud7402.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1113_length_13659_cov_4.120357 5421..5423 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7402.t1.CDS1	Gcaud7402.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1113_length_13659_cov_4.120357 5421..7340 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7402.t1.exon1	Gcaud7402.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1113_length_13659_cov_4.120357 5421..7340 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7402.t1.stop1	Gcaud7402.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1113_length_13659_cov_4.120357 7338..7340 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7402.t1	Gcaud7402.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1113_length_13659_cov_4.120357 5421..7340 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1113_length_13659_cov_4.120357:5421..7340+
coding sequence from alignment at NODE_1113_length_13659_cov_4.120357:5421..7340+

mRNA sequence

>Gcaud7402.t1 ID=Gcaud7402.t1|Name=Gcaud7402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=640bp
MIVNVEYPDIATRPVQNLHVARQLPKHPRDFQLHLSSGEPSTEIHLPLTY
SPPGEKVIALKISVMMEEQPTSPTAVRDIFFPNLTTYGSQRPRSSPSGLQ
NSVSHARSQSRERHIRTPSPEASSIMWIDERKYYSSASKTSRGRFNFGKR
SADKELSECVKGEQWISRNIATDEVDTRPLHELRSLLLGSGLEARAKQSQ
GLHTFSDVTLIVKRDEGDDVEFYLHRCVLAMASPVFRAMFTCSMRESLTG
RVELSSFDVATVSIAVRHMYGENIADSVDQNPFGIYRFGHLFDVSSLLGV
TQKFLISKMSTSTCIDVLNLGVFFNDNKLEDHATTYVLEHFSEISSVRET
RQKLCSLPPKQFLALLESDMLVATELEIFLVSMNWLSYHEGSVSVKDVLR
RIRWPLMTQHMFRTAMNSPMITRFPALRNFLRSSRTTISQHLNGTTPGRR
VIFGHPMATVLVPAVRQPPAALLYLPEANSSGTPKSGSNFTRRNTQEQRL
SSRNEKVFEYEGLSWGFRAELSTCKSLGCSHNRLSASLWLEQNDAGSVSS
TPQREEHGSHLFPMKVKARCMVWNNVGGQLHHKVINFTFQSSGWASGWCV
EDMLGGHDQTEVFFGKLSSIREVGPVLQVAIEILKCEKG*

spliced messenger RNA

>Gcaud7402.t1 ID=Gcaud7402.t1|Name=Gcaud7402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:5421..7340+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGTAAATGTTGAATACCCTGATATTGCAACACGGCCGGTACAGAA
TTTGCACGTTGCACGACAATTACCGAAACATCCTCGAGACTTCCAACTTC
ACTTGTCAAGCGGAGAACCATCAACGGAGATACACTTGCCATTGACCTAC
TCGCCCCCCGGCGAGAAAGTGATTGCGCTGAAGATAAGCGTAATGATGGA
GGAACAGCCGACGTCCCCGACTGCAGTTCGAGACATTTTCTTTCCAAATC
TAACAACATATGGCTCACAACGTCCACGCTCGTCTCCATCTGGGCTTCAA
AACTCGGTTTCACACGCTCGTTCCCAGTCAAGAGAGCGTCACATTCGTAC
TCCATCACCAGAGGCTTCATCCATAATGTGGATCGATGAGAGAAAGTATT
ATTCTTCGGCGAGTAAGACATCGAGAGGCCGGTTCAACTTTGGCAAACGC
TCTGCGGACAAGGAATTATCTGAATGTGTGAAAGGAGAACAGTGGATTTC
TCGCAATATTGCCACGGATGAAGTTGATACACGGCCGTTACACGAACTGA
GGTCTCTTCTGCTTGGAAGCGGTTTGGAAGCCAGAGCGAAACAGAGTCAG
GGTTTGCACACTTTCTCGGATGTCACCCTGATCGTAAAAAGAGATGAAGG
GGATGATGTAGAATTCTACTTGCATCGTTGCGTCCTTGCCATGGCATCCC
CTGTATTTAGAGCAATGTTCACATGCAGCATGCGTGAAAGCCTAACTGGT
CGTGTCGAATTATCATCCTTTGATGTTGCTACGGTTAGCATTGCAGTTCG
TCATATGTATGGGGAGAACATAGCGGATTCCGTCGACCAAAACCCGTTTG
GCATATATAGGTTTGGCCATCTGTTTGACGTGTCTAGCTTGTTGGGGGTT
ACACAGAAGTTTTTGATATCCAAGATGTCTACTTCAACTTGCATTGACGT
TCTAAACCTCGGTGTCTTCTTCAACGATAACAAGCTGGAGGATCATGCCA
CGACCTATGTGTTGGAACATTTCTCAGAAATTTCATCAGTAAGGGAAACC
CGCCAGAAGCTCTGTTCACTTCCACCGAAACAATTTTTAGCTCTTCTTGA
GTCAGACATGTTGGTCGCGACTGAACTAGAAATCTTCCTGGTCAGCATGA
ATTGGCTCTCGTATCATGAAGGTAGTGTCTCCGTCAAAGATGTTCTCCGG
AGAATACGATGGCCATTGATGACACAACACATGTTCCGGACGGCGATGAA
TTCTCCCATGATCACTCGATTTCCGGCGCTACGGAACTTCCTCAGGTCGT
CCCGGACAACGATATCTCAGCATTTGAATGGGACTACACCCGGAAGACGA
GTCATATTTGGGCATCCAATGGCCACGGTCCTAGTACCGGCGGTTCGCCA
ACCACCGGCTGCGCTTCTATATCTTCCTGAAGCCAATTCTTCCGGAACCC
CTAAATCCGGATCAAATTTCACCCGACGGAACACCCAAGAACAGAGATTG
TCCTCCAGAAATGAGAAGGTTTTTGAATATGAGGGTTTGTCATGGGGGTT
TCGAGCAGAACTGAGCACATGCAAGTCCCTTGGCTGCTCTCATAATAGAT
TGTCCGCCAGTCTTTGGCTCGAACAGAATGATGCGGGATCCGTCTCATCA
ACACCGCAACGAGAAGAACATGGGTCACACTTGTTTCCCATGAAGGTCAA
GGCGAGATGCATGGTGTGGAATAATGTGGGGGGGCAGCTCCATCACAAAG
TCATAAATTTCACCTTCCAATCGTCGGGGTGGGCAAGCGGGTGGTGCGTA
GAGGATATGCTCGGGGGACATGACCAGACCGAAGTGTTCTTTGGTAAGCT
TTCATCGATTCGGGAGGTGGGACCTGTGTTACAGGTAGCTATTGAAATAT
TGAAATGTGAAAAGGGATGA

protein sequence of Gcaud7402.t1

>Gcaud7402.t1 ID=Gcaud7402.t1|Name=Gcaud7402.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=640bp
MIVNVEYPDIATRPVQNLHVARQLPKHPRDFQLHLSSGEPSTEIHLPLTY
SPPGEKVIALKISVMMEEQPTSPTAVRDIFFPNLTTYGSQRPRSSPSGLQ
NSVSHARSQSRERHIRTPSPEASSIMWIDERKYYSSASKTSRGRFNFGKR
SADKELSECVKGEQWISRNIATDEVDTRPLHELRSLLLGSGLEARAKQSQ
GLHTFSDVTLIVKRDEGDDVEFYLHRCVLAMASPVFRAMFTCSMRESLTG
RVELSSFDVATVSIAVRHMYGENIADSVDQNPFGIYRFGHLFDVSSLLGV
TQKFLISKMSTSTCIDVLNLGVFFNDNKLEDHATTYVLEHFSEISSVRET
RQKLCSLPPKQFLALLESDMLVATELEIFLVSMNWLSYHEGSVSVKDVLR
RIRWPLMTQHMFRTAMNSPMITRFPALRNFLRSSRTTISQHLNGTTPGRR
VIFGHPMATVLVPAVRQPPAALLYLPEANSSGTPKSGSNFTRRNTQEQRL
SSRNEKVFEYEGLSWGFRAELSTCKSLGCSHNRLSASLWLEQNDAGSVSS
TPQREEHGSHLFPMKVKARCMVWNNVGGQLHHKVINFTFQSSGWASGWCV
EDMLGGHDQTEVFFGKLSSIREVGPVLQVAIEILKCEKG*

mRNA from alignment at NODE_1113_length_13659_cov_4.120357:5421..7340+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7402.t1 ID=Gcaud7402.t1|Name=Gcaud7402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:5421..7340+ (Gracilaria caudata M_176_S67 male)
ATGATCGTAAATGTTGAATACCCTGATATTGCAACACGGCCGGTACAGAA
TTTGCACGTTGCACGACAATTACCGAAACATCCTCGAGACTTCCAACTTC
ACTTGTCAAGCGGAGAACCATCAACGGAGATACACTTGCCATTGACCTAC
TCGCCCCCCGGCGAGAAAGTGATTGCGCTGAAGATAAGCGTAATGATGGA
GGAACAGCCGACGTCCCCGACTGCAGTTCGAGACATTTTCTTTCCAAATC
TAACAACATATGGCTCACAACGTCCACGCTCGTCTCCATCTGGGCTTCAA
AACTCGGTTTCACACGCTCGTTCCCAGTCAAGAGAGCGTCACATTCGTAC
TCCATCACCAGAGGCTTCATCCATAATGTGGATCGATGAGAGAAAGTATT
ATTCTTCGGCGAGTAAGACATCGAGAGGCCGGTTCAACTTTGGCAAACGC
TCTGCGGACAAGGAATTATCTGAATGTGTGAAAGGAGAACAGTGGATTTC
TCGCAATATTGCCACGGATGAAGTTGATACACGGCCGTTACACGAACTGA
GGTCTCTTCTGCTTGGAAGCGGTTTGGAAGCCAGAGCGAAACAGAGTCAG
GGTTTGCACACTTTCTCGGATGTCACCCTGATCGTAAAAAGAGATGAAGG
GGATGATGTAGAATTCTACTTGCATCGTTGCGTCCTTGCCATGGCATCCC
CTGTATTTAGAGCAATGTTCACATGCAGCATGCGTGAAAGCCTAACTGGT
CGTGTCGAATTATCATCCTTTGATGTTGCTACGGTTAGCATTGCAGTTCG
TCATATGTATGGGGAGAACATAGCGGATTCCGTCGACCAAAACCCGTTTG
GCATATATAGGTTTGGCCATCTGTTTGACGTGTCTAGCTTGTTGGGGGTT
ACACAGAAGTTTTTGATATCCAAGATGTCTACTTCAACTTGCATTGACGT
TCTAAACCTCGGTGTCTTCTTCAACGATAACAAGCTGGAGGATCATGCCA
CGACCTATGTGTTGGAACATTTCTCAGAAATTTCATCAGTAAGGGAAACC
CGCCAGAAGCTCTGTTCACTTCCACCGAAACAATTTTTAGCTCTTCTTGA
GTCAGACATGTTGGTCGCGACTGAACTAGAAATCTTCCTGGTCAGCATGA
ATTGGCTCTCGTATCATGAAGGTAGTGTCTCCGTCAAAGATGTTCTCCGG
AGAATACGATGGCCATTGATGACACAACACATGTTCCGGACGGCGATGAA
TTCTCCCATGATCACTCGATTTCCGGCGCTACGGAACTTCCTCAGGTCGT
CCCGGACAACGATATCTCAGCATTTGAATGGGACTACACCCGGAAGACGA
GTCATATTTGGGCATCCAATGGCCACGGTCCTAGTACCGGCGGTTCGCCA
ACCACCGGCTGCGCTTCTATATCTTCCTGAAGCCAATTCTTCCGGAACCC
CTAAATCCGGATCAAATTTCACCCGACGGAACACCCAAGAACAGAGATTG
TCCTCCAGAAATGAGAAGGTTTTTGAATATGAGGGTTTGTCATGGGGGTT
TCGAGCAGAACTGAGCACATGCAAGTCCCTTGGCTGCTCTCATAATAGAT
TGTCCGCCAGTCTTTGGCTCGAACAGAATGATGCGGGATCCGTCTCATCA
ACACCGCAACGAGAAGAACATGGGTCACACTTGTTTCCCATGAAGGTCAA
GGCGAGATGCATGGTGTGGAATAATGTGGGGGGGCAGCTCCATCACAAAG
TCATAAATTTCACCTTCCAATCGTCGGGGTGGGCAAGCGGGTGGTGCGTA
GAGGATATGCTCGGGGGACATGACCAGACCGAAGTGTTCTTTGGTAAGCT
TTCATCGATTCGGGAGGTGGGACCTGTGTTACAGGTAGCTATTGAAATAT
TGAAATGTGAAAAGGGATGA

Coding sequence (CDS) from alignment at NODE_1113_length_13659_cov_4.120357:5421..7340+

>Gcaud7402.t1 ID=Gcaud7402.t1|Name=Gcaud7402.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1920bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:5421..7340+ (Gracilaria caudata M_176_S67 male)
ATGATCGTAAATGTTGAATACCCTGATATTGCAACACGGCCGGTACAGAA
TTTGCACGTTGCACGACAATTACCGAAACATCCTCGAGACTTCCAACTTC
ACTTGTCAAGCGGAGAACCATCAACGGAGATACACTTGCCATTGACCTAC
TCGCCCCCCGGCGAGAAAGTGATTGCGCTGAAGATAAGCGTAATGATGGA
GGAACAGCCGACGTCCCCGACTGCAGTTCGAGACATTTTCTTTCCAAATC
TAACAACATATGGCTCACAACGTCCACGCTCGTCTCCATCTGGGCTTCAA
AACTCGGTTTCACACGCTCGTTCCCAGTCAAGAGAGCGTCACATTCGTAC
TCCATCACCAGAGGCTTCATCCATAATGTGGATCGATGAGAGAAAGTATT
ATTCTTCGGCGAGTAAGACATCGAGAGGCCGGTTCAACTTTGGCAAACGC
TCTGCGGACAAGGAATTATCTGAATGTGTGAAAGGAGAACAGTGGATTTC
TCGCAATATTGCCACGGATGAAGTTGATACACGGCCGTTACACGAACTGA
GGTCTCTTCTGCTTGGAAGCGGTTTGGAAGCCAGAGCGAAACAGAGTCAG
GGTTTGCACACTTTCTCGGATGTCACCCTGATCGTAAAAAGAGATGAAGG
GGATGATGTAGAATTCTACTTGCATCGTTGCGTCCTTGCCATGGCATCCC
CTGTATTTAGAGCAATGTTCACATGCAGCATGCGTGAAAGCCTAACTGGT
CGTGTCGAATTATCATCCTTTGATGTTGCTACGGTTAGCATTGCAGTTCG
TCATATGTATGGGGAGAACATAGCGGATTCCGTCGACCAAAACCCGTTTG
GCATATATAGGTTTGGCCATCTGTTTGACGTGTCTAGCTTGTTGGGGGTT
ACACAGAAGTTTTTGATATCCAAGATGTCTACTTCAACTTGCATTGACGT
TCTAAACCTCGGTGTCTTCTTCAACGATAACAAGCTGGAGGATCATGCCA
CGACCTATGTGTTGGAACATTTCTCAGAAATTTCATCAGTAAGGGAAACC
CGCCAGAAGCTCTGTTCACTTCCACCGAAACAATTTTTAGCTCTTCTTGA
GTCAGACATGTTGGTCGCGACTGAACTAGAAATCTTCCTGGTCAGCATGA
ATTGGCTCTCGTATCATGAAGGTAGTGTCTCCGTCAAAGATGTTCTCCGG
AGAATACGATGGCCATTGATGACACAACACATGTTCCGGACGGCGATGAA
TTCTCCCATGATCACTCGATTTCCGGCGCTACGGAACTTCCTCAGGTCGT
CCCGGACAACGATATCTCAGCATTTGAATGGGACTACACCCGGAAGACGA
GTCATATTTGGGCATCCAATGGCCACGGTCCTAGTACCGGCGGTTCGCCA
ACCACCGGCTGCGCTTCTATATCTTCCTGAAGCCAATTCTTCCGGAACCC
CTAAATCCGGATCAAATTTCACCCGACGGAACACCCAAGAACAGAGATTG
TCCTCCAGAAATGAGAAGGTTTTTGAATATGAGGGTTTGTCATGGGGGTT
TCGAGCAGAACTGAGCACATGCAAGTCCCTTGGCTGCTCTCATAATAGAT
TGTCCGCCAGTCTTTGGCTCGAACAGAATGATGCGGGATCCGTCTCATCA
ACACCGCAACGAGAAGAACATGGGTCACACTTGTTTCCCATGAAGGTCAA
GGCGAGATGCATGGTGTGGAATAATGTGGGGGGGCAGCTCCATCACAAAG
TCATAAATTTCACCTTCCAATCGTCGGGGTGGGCAAGCGGGTGGTGCGTA
GAGGATATGCTCGGGGGACATGACCAGACCGAAGTGTTCTTTGGTAAGCT
TTCATCGATTCGGGAGGTGGGACCTGTGTTACAGGTAGCTATTGAAATAT
TGAAATGTGAAAAGGGATGA