Gcaud7373.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7373.t2
Unique Name	Gcaud7373.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	451

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_85_length_54060_cov_4.846356	contig	NODE_85_length_54060_cov_4.846356:44641..46188 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_02148T0
Preferred name	LST8
PFAMs	WD40
Max annot lvl	4751\|Fungi
KEGG ko	ko:K08266
KEGG Pathway	ko04136,ko04138,ko04140,ko04150,ko04151,ko04714,map04136,map04138,map04140,map04150,map04151,map04714
GOs	GO:0000139,GO:0001558,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005829,GO:0005886,GO:0006996,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0008047,GO:0008150,GO:0009893,GO:0009898,GO:0009987,GO:0010008,GO:0010562,GO:0010604,GO:0012505,GO:0016020,GO:0016043,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019887,GO:0019897,GO:0019898,GO:0023052,GO:0030029,GO:0030036,GO:0030234,GO:0030295,GO:0030950,GO:0030952,GO:0031090,GO:0031234,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031505,GO:0031929,GO:0031930,GO:0031931,GO:0031932,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033674,GO:0034399,GO:0035556,GO:0038201,GO:0040008,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043549,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045229,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051493,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098772,GO:0098791,GO:0098805
Evalue	3.31e-14
EggNOG OGs	KOG0315@1\|root,KOG0315@2759\|Eukaryota,38BGK@33154\|Opisthokonta,3NTXM@4751\|Fungi
Description	WD-repeat protein pop3
COG category	S
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7373	Gcaud7373	Gracilaria caudata M_176_S67 male	gene	NODE_85_length_54060_cov_4.846356 44641..46188 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7373.t2	Gcaud7373.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_85_length_54060_cov_4.846356 44641..46188 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7373.t2.stop1	Gcaud7373.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_85_length_54060_cov_4.846356 44641..44643 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7373.t2.CDS1	Gcaud7373.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 44641..44677 -
Gcaud7373.t2.CDS2	Gcaud7373.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 44772..44862 -
Gcaud7373.t2.CDS3	Gcaud7373.t2.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 44964..46188 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7373.t2.exon1	Gcaud7373.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 44641..44677 -
Gcaud7373.t2.exon2	Gcaud7373.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 44772..44862 -
Gcaud7373.t2.exon3	Gcaud7373.t2.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 44964..46188 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7373.t2.intron1	Gcaud7373.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_85_length_54060_cov_4.846356 44678..44771 -
Gcaud7373.t2.intron2	Gcaud7373.t2.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_85_length_54060_cov_4.846356 44863..44963 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7373.t2.start1	Gcaud7373.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_85_length_54060_cov_4.846356 46186..46188 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_85_length_54060_cov_4.846356:44641..46188-
coding sequence from alignment at NODE_85_length_54060_cov_4.846356:44641..46188-

mRNA sequence

>Gcaud7373.t2 ID=Gcaud7373.t2|Name=Gcaud7373.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=451bp
MNPFLLAVGGYDTNIRLFDSVNNEPVRVLQFCDQQVLRLAFSGSAPVPAD
APLFLAVAGSPSVAVYDVSTNHTSPNTFAIFQGHLEPVTAVGFEPNHNAF
VYSASEDGTLQTWLPKLAATSQSAYPSFHSHSLRHPMFSAASATFSFPAK
LVNNKPDGTTVAIHDAAYYPPLDVFFTVDFLGRFRVWNHRTSSLRSEHIP
HPSRRNLQCIDLSHDYSTIVMANFDGFVFIYDTQSVLASDINRPNTLSKP
LTPLTIRASNSYIPRVKLSHSGALLVCTTGSGAIKIFKMSDILNDRASKK
SASVSETEEHSVMPVREFTGRPGWIWDASFIEDSEKFLFTCSSVTQVMLW
HIDNLGCSVELTGFPKPTVCLAVRERRHPSSHSNSSKSVALDRTQRTSLN
GRNATCQDERLPAHIQEPLFSEIVTLERRRGKQSHSSSIEHIKNDQDMTS
*

spliced messenger RNA

>Gcaud7373.t2 ID=Gcaud7373.t2|Name=Gcaud7373.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:44641..46188- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTTTCCTTCTGGCCGTGGGCGGCTACGATACCAACATTCGTCT
GTTTGACTCTGTTAACAATGAGCCTGTTCGAGTGTTGCAGTTTTGTGATC
AACAGGTTTTAAGGCTCGCCTTTTCAGGCTCCGCACCTGTTCCGGCTGAT
GCTCCGTTATTTCTTGCTGTTGCTGGCTCTCCAAGCGTTGCGGTATACGA
CGTGTCTACCAATCACACTTCTCCCAATACGTTCGCCATCTTTCAAGGAC
ATCTTGAACCTGTCACGGCCGTGGGATTCGAGCCCAATCATAATGCGTTT
GTGTATTCTGCTTCCGAGGATGGTACTTTGCAAACATGGCTTCCTAAATT
GGCTGCAACCTCACAATCTGCGTATCCAAGCTTTCATTCGCATTCTCTTC
GTCATCCCATGTTTTCTGCCGCCTCGGCCACTTTTTCTTTCCCGGCAAAA
CTCGTCAACAACAAGCCGGATGGTACTACTGTTGCCATACACGACGCTGC
GTATTATCCACCTCTCGATGTGTTTTTCACCGTCGACTTTCTTGGTCGTT
TTCGCGTTTGGAATCATCGTACTTCCTCCTTGAGAAGCGAGCATATTCCA
CATCCAAGTCGTCGAAATCTTCAATGCATCGACCTCAGTCACGACTATTC
CACTATTGTCATGGCCAATTTTGATGGGTTTGTGTTTATCTATGATACCC
AGAGCGTACTTGCATCCGATATTAATCGACCAAATACTCTTTCTAAACCC
CTCACCCCACTAACAATTCGTGCAAGCAATTCGTATATTCCGCGTGTAAA
ACTCAGTCATAGTGGTGCTCTTCTTGTATGCACCACTGGATCGGGAGCCA
TCAAAATCTTCAAGATGTCTGATATTCTTAACGATCGAGCGTCGAAAAAA
TCCGCTTCTGTGTCTGAAACTGAGGAACATTCTGTCATGCCAGTCCGCGA
GTTCACGGGTCGTCCAGGCTGGATTTGGGATGCTTCCTTCATTGAGGACA
GTGAAAAGTTCTTGTTCACTTGCAGTAGCGTCACCCAAGTCATGCTATGG
CACATCGATAATCTAGGGTGTAGCGTCGAGCTCACTGGTTTTCCGAAACC
CACTGTGTGCCTTGCAGTTCGAGAACGCAGACACCCATCTTCTCATTCCA
ACTCTAGTAAGTCAGTGGCCTTAGACAGAACTCAACGCACATCACTTAAT
GGTCGAAACGCCACCTGTCAAGACGAACGCCTTCCAGCTCATATACAAGA
GCCACTATTTTCGGAGATCGTAACTCTTGAAAGGAGACGAGGAAAGCAGT
CCCACTCTTCCAGCATAGAGCATATCAAGAATGATCAGGACATGACGTCG
TGA

protein sequence of Gcaud7373.t2

>Gcaud7373.t2 ID=Gcaud7373.t2|Name=Gcaud7373.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=451bp
MNPFLLAVGGYDTNIRLFDSVNNEPVRVLQFCDQQVLRLAFSGSAPVPAD
APLFLAVAGSPSVAVYDVSTNHTSPNTFAIFQGHLEPVTAVGFEPNHNAF
VYSASEDGTLQTWLPKLAATSQSAYPSFHSHSLRHPMFSAASATFSFPAK
LVNNKPDGTTVAIHDAAYYPPLDVFFTVDFLGRFRVWNHRTSSLRSEHIP
HPSRRNLQCIDLSHDYSTIVMANFDGFVFIYDTQSVLASDINRPNTLSKP
LTPLTIRASNSYIPRVKLSHSGALLVCTTGSGAIKIFKMSDILNDRASKK
SASVSETEEHSVMPVREFTGRPGWIWDASFIEDSEKFLFTCSSVTQVMLW
HIDNLGCSVELTGFPKPTVCLAVRERRHPSSHSNSSKSVALDRTQRTSLN
GRNATCQDERLPAHIQEPLFSEIVTLERRRGKQSHSSSIEHIKNDQDMTS
*

mRNA from alignment at NODE_85_length_54060_cov_4.846356:44641..46188-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7373.t2 ID=Gcaud7373.t2|Name=Gcaud7373.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:44641..46188- (Gracilaria caudata M_176_S67 male)
ATGAATCCTTTCCTTCTGGCCGTGGGCGGCTACGATACCAACATTCGTCT
GTTTGACTCTGTTAACAATGAGCCTGTTCGAGTGTTGCAGTTTTGTGATC
AACAGGTTTTAAGGCTCGCCTTTTCAGGCTCCGCACCTGTTCCGGCTGAT
GCTCCGTTATTTCTTGCTGTTGCTGGCTCTCCAAGCGTTGCGGTATACGA
CGTGTCTACCAATCACACTTCTCCCAATACGTTCGCCATCTTTCAAGGAC
ATCTTGAACCTGTCACGGCCGTGGGATTCGAGCCCAATCATAATGCGTTT
GTGTATTCTGCTTCCGAGGATGGTACTTTGCAAACATGGCTTCCTAAATT
GGCTGCAACCTCACAATCTGCGTATCCAAGCTTTCATTCGCATTCTCTTC
GTCATCCCATGTTTTCTGCCGCCTCGGCCACTTTTTCTTTCCCGGCAAAA
CTCGTCAACAACAAGCCGGATGGTACTACTGTTGCCATACACGACGCTGC
GTATTATCCACCTCTCGATGTGTTTTTCACCGTCGACTTTCTTGGTCGTT
TTCGCGTTTGGAATCATCGTACTTCCTCCTTGAGAAGCGAGCATATTCCA
CATCCAAGTCGTCGAAATCTTCAATGCATCGACCTCAGTCACGACTATTC
CACTATTGTCATGGCCAATTTTGATGGGTTTGTGTTTATCTATGATACCC
AGAGCGTACTTGCATCCGATATTAATCGACCAAATACTCTTTCTAAACCC
CTCACCCCACTAACAATTCGTGCAAGCAATTCGTATATTCCGCGTGTAAA
ACTCAGTCATAGTGGTGCTCTTCTTGTATGCACCACTGGATCGGGAGCCA
TCAAAATCTTCAAGATGTCTGATATTCTTAACGATCGAGCGTCGAAAAAA
TCCGCTTCTGTGTCTGAAACTGAGGAACATTCTGTCATGCCAGTCCGCGA
GTTCACGGGTCGTCCAGGCTGGATTTGGGATGCTTCCTTCATTGAGGACA
GTGAAAAGTTCTTGTTCACTTGCAGTAGCGTCACCCAAGTCATGCTATGG
CACATCGATAATCTAGGGTGTAGCGTCGAGCTCACTGGTTTTCCGAAACC
CACTGTGTGCCTTGCAGTTCGAGAACGCAGACACCCATCTTCTCATTCCA
ACTCTAGTAAGTCAGTGGCCTTAGACAGAACTCAACGCACATCACTTAAT
GGTCGAAACGCCACCTGTCAAGACGGTTTGTTTAACCACGGTTCTGTCAC
ATAATTCTTATGGCGCAAAAGATCAAACGTCCGTGCTAACGATCTATTTC
GGTTGCTTGGTGATGCCCAACTGCAGAACGCCTTCCAGCTCATATACAAG
AGCCACTATTTTCGGAGATCGTAACTCTTGAAAGGAGACGAGGAAAGCAG
TCCCACTCTTCCAGCATGTACCACCAAATGTATCCTTGTAAACTACAGGA
ACGCCCTTTTTTTGTTCACGGCAAAAATTTGTCTTTTGTCCTTCTTCTTT
GTCGAACGTAGAGAGCATATCAAGAATGATCAGGACATGACGTCGTGA

Coding sequence (CDS) from alignment at NODE_85_length_54060_cov_4.846356:44641..46188-

>Gcaud7373.t2 ID=Gcaud7373.t2|Name=Gcaud7373.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1353bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:44641..46188- (Gracilaria caudata M_176_S67 male)
ATGAATCCTTTCCTTCTGGCCGTGGGCGGCTACGATACCAACATTCGTCT
GTTTGACTCTGTTAACAATGAGCCTGTTCGAGTGTTGCAGTTTTGTGATC
AACAGGTTTTAAGGCTCGCCTTTTCAGGCTCCGCACCTGTTCCGGCTGAT
GCTCCGTTATTTCTTGCTGTTGCTGGCTCTCCAAGCGTTGCGGTATACGA
CGTGTCTACCAATCACACTTCTCCCAATACGTTCGCCATCTTTCAAGGAC
ATCTTGAACCTGTCACGGCCGTGGGATTCGAGCCCAATCATAATGCGTTT
GTGTATTCTGCTTCCGAGGATGGTACTTTGCAAACATGGCTTCCTAAATT
GGCTGCAACCTCACAATCTGCGTATCCAAGCTTTCATTCGCATTCTCTTC
GTCATCCCATGTTTTCTGCCGCCTCGGCCACTTTTTCTTTCCCGGCAAAA
CTCGTCAACAACAAGCCGGATGGTACTACTGTTGCCATACACGACGCTGC
GTATTATCCACCTCTCGATGTGTTTTTCACCGTCGACTTTCTTGGTCGTT
TTCGCGTTTGGAATCATCGTACTTCCTCCTTGAGAAGCGAGCATATTCCA
CATCCAAGTCGTCGAAATCTTCAATGCATCGACCTCAGTCACGACTATTC
CACTATTGTCATGGCCAATTTTGATGGGTTTGTGTTTATCTATGATACCC
AGAGCGTACTTGCATCCGATATTAATCGACCAAATACTCTTTCTAAACCC
CTCACCCCACTAACAATTCGTGCAAGCAATTCGTATATTCCGCGTGTAAA
ACTCAGTCATAGTGGTGCTCTTCTTGTATGCACCACTGGATCGGGAGCCA
TCAAAATCTTCAAGATGTCTGATATTCTTAACGATCGAGCGTCGAAAAAA
TCCGCTTCTGTGTCTGAAACTGAGGAACATTCTGTCATGCCAGTCCGCGA
GTTCACGGGTCGTCCAGGCTGGATTTGGGATGCTTCCTTCATTGAGGACA
GTGAAAAGTTCTTGTTCACTTGCAGTAGCGTCACCCAAGTCATGCTATGG
CACATCGATAATCTAGGGTGTAGCGTCGAGCTCACTGGTTTTCCGAAACC
CACTGTGTGCCTTGCAGTTCGAGAACGCAGACACCCATCTTCTCATTCCA
ACTCTAGTAAGTCAGTGGCCTTAGACAGAACTCAACGCACATCACTTAAT
GGTCGAAACGCCACCTGTCAAGACGAACGCCTTCCAGCTCATATACAAGA
GCCACTATTTTCGGAGATCGTAACTCTTGAAAGGAGACGAGGAAAGCAGT
CCCACTCTTCCAGCATAGAGCATATCAAGAATGATCAGGACATGACGTCG
TGA