Gcaud7372.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7372.t1
Unique Name	Gcaud7372.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_85_length_54060_cov_4.846356	contig	NODE_85_length_54060_cov_4.846356:43070..44574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP193CT
Preferred name	cMDH
PFAMs	Ldh_1_C,Ldh_1_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00031
KEGG ko	ko:K00024,ko:K00025,ko:K00026
KEGG Reaction	R00342,R07136
KEGG Pathway	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04964,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map04964
KEGG Module	M00009,M00011,M00012,M00168,M00171,M00173,M00346,M00374,M00620,M00740
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030054,GO:0030060,GO:0031090,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0046686,GO:0048046,GO:0050896,GO:0051186,GO:0055044,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0072524,GO:0098588,GO:0098805,GO:1901360,GO:1901564
Evalue	8.63e-139
EggNOG OGs	COG0039@1\|root,KOG1496@2759\|Eukaryota
EC	1.1.1.37
Description	malate metabolic process
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7372	Gcaud7372	Gracilaria caudata M_176_S67 male	gene	NODE_85_length_54060_cov_4.846356 43070..44574 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7372.t1	Gcaud7372.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_85_length_54060_cov_4.846356 43070..44574 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7372.t1.start1	Gcaud7372.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_85_length_54060_cov_4.846356 43070..43072 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7372.t1.CDS1	Gcaud7372.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 43070..43197 +
Gcaud7372.t1.CDS2	Gcaud7372.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 43521..44574 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7372.t1.exon1	Gcaud7372.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 43070..43197 +
Gcaud7372.t1.exon2	Gcaud7372.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 43521..44574 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7372.t1.intron1	Gcaud7372.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_85_length_54060_cov_4.846356 43198..43520 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7372.t1.stop1	Gcaud7372.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_85_length_54060_cov_4.846356 44572..44574 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_85_length_54060_cov_4.846356:43070..44574+
coding sequence from alignment at NODE_85_length_54060_cov_4.846356:43070..44574+

mRNA sequence

>Gcaud7372.t1 ID=Gcaud7372.t1|Name=Gcaud7372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=394bp
MRLGASRSLRGLATKTDLLPPLKIAVTGAAGQIGYALVMRIASGEMLGPD
QLLELSLIETEAGMAPLRGVMMELEDGAFPLLSKVTATTDLHEGFGDISF
AMLIGAQPRTKGMERSDLMAANAKIFAEQGKALNETAAENAKILVVGNPA
NTNALIASENAPDMWPEQFIAMTRLDQSRAKALLAEKADVPVKDVDRVII
WGNHSATQYPDLSHARIGGKWAKSIVTDEKWIKEDFIPRVQKRGAEVIGA
RGASSAASAASAALDTIRDLHQGSDEEWLSNAVVSDGSYGITKGIWYSVP
TVCRGDSHFRRVQRLPIDEFSAQMMSKTEKELLDERDSVRHLLPGHEMKP
VSWNVLESLQESFEAGDMAKVDKLASELPESMQKSVNEAKAVA*

spliced messenger RNA

>Gcaud7372.t1 ID=Gcaud7372.t1|Name=Gcaud7372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:43070..44574+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTCGGCGCTTCAAGATCGCTGCGTGGACTGGCAACCAAGACCGA
TCTTCTCCCTCCTCTCAAGATTGCTGTCACCGGAGCTGCAGGTCAAATCG
GCTATGCTCTTGTCATGCGTATTGCTAGCGGGGAAATGCTGGGCCCAGAT
CAGCTACTAGAGCTCAGCCTTATCGAAACCGAAGCGGGAATGGCACCACT
ACGTGGCGTTATGATGGAGCTTGAGGATGGCGCATTCCCCTTGCTTTCTA
AGGTCACTGCGACTACAGACCTCCATGAAGGCTTTGGCGATATCTCGTTT
GCCATGCTTATCGGAGCACAACCGCGCACCAAGGGGATGGAACGTTCCGA
TCTTATGGCTGCAAATGCGAAGATCTTTGCCGAACAAGGTAAGGCCTTGA
ACGAAACTGCCGCGGAGAACGCCAAGATTCTTGTGGTTGGTAATCCTGCC
AACACCAATGCGCTCATCGCATCTGAAAACGCGCCGGATATGTGGCCGGA
ACAGTTCATTGCAATGACTCGTCTCGACCAGTCTCGCGCAAAGGCTTTAT
TGGCTGAAAAAGCGGATGTTCCTGTCAAGGACGTCGACCGCGTGATTATC
TGGGGTAACCATTCTGCCACGCAATATCCTGATCTTTCCCATGCTCGCAT
TGGTGGCAAATGGGCTAAGTCAATTGTCACCGACGAAAAGTGGATCAAGG
AAGACTTCATTCCGCGTGTCCAGAAGCGAGGCGCTGAGGTGATTGGCGCT
CGAGGCGCGTCATCAGCAGCCTCGGCCGCCTCAGCGGCACTTGATACAAT
CAGAGACTTGCATCAAGGATCGGACGAGGAGTGGCTTTCAAATGCCGTTG
TGTCTGACGGAAGCTACGGAATCACGAAAGGTATTTGGTACTCGGTGCCA
ACAGTGTGTAGGGGAGATTCTCACTTCCGACGTGTTCAGCGCCTGCCTAT
TGATGAGTTTTCAGCTCAGATGATGAGCAAAACCGAGAAAGAGCTGTTGG
ACGAACGTGACTCTGTTCGCCATTTGTTGCCGGGACACGAGATGAAACCA
GTATCCTGGAATGTTTTGGAATCACTTCAGGAATCATTCGAGGCTGGAGA
TATGGCGAAGGTAGATAAGTTAGCTTCAGAATTGCCTGAATCCATGCAAA
AGAGCGTGAATGAGGCAAAGGCTGTCGCCTAA

protein sequence of Gcaud7372.t1

>Gcaud7372.t1 ID=Gcaud7372.t1|Name=Gcaud7372.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=394bp
MRLGASRSLRGLATKTDLLPPLKIAVTGAAGQIGYALVMRIASGEMLGPD
QLLELSLIETEAGMAPLRGVMMELEDGAFPLLSKVTATTDLHEGFGDISF
AMLIGAQPRTKGMERSDLMAANAKIFAEQGKALNETAAENAKILVVGNPA
NTNALIASENAPDMWPEQFIAMTRLDQSRAKALLAEKADVPVKDVDRVII
WGNHSATQYPDLSHARIGGKWAKSIVTDEKWIKEDFIPRVQKRGAEVIGA
RGASSAASAASAALDTIRDLHQGSDEEWLSNAVVSDGSYGITKGIWYSVP
TVCRGDSHFRRVQRLPIDEFSAQMMSKTEKELLDERDSVRHLLPGHEMKP
VSWNVLESLQESFEAGDMAKVDKLASELPESMQKSVNEAKAVA*

mRNA from alignment at NODE_85_length_54060_cov_4.846356:43070..44574+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7372.t1 ID=Gcaud7372.t1|Name=Gcaud7372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1505bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:43070..44574+ (Gracilaria caudata M_176_S67 male)
ATGCGCCTCGGCGCTTCAAGATCGCTGCGTGGACTGGCAACCAAGACCGA
TCTTCTCCCTCCTCTCAAGATTGCTGTCACCGGAGCTGCAGGTCAAATCG
GCTATGCTCTTGTCATGCGTATTGCTAGGTATGTTCAATTCAATCCTGGA
CCCACATAACAAAGCTTTTCCTCCTCGAAAAAGTTTTATTGCGATTGCGG
TTCGTCAGCCAAGGATCACAGCGAATGATCCCTTTCAATCACAAGTCGTA
CTTTGCGTTTCTTCCTTCCATCGAGCGTATCTTGCCCGCCCGATTGGATG
TGAAGTAATGATAGCGTCCTGCGAAATACCGCGATACGCCCTCCACTACG
CAATCAGGTTCCGTGGCATAACCAAGCAGTGTATATTCGAGCGAAATCTA
ACCTTTGCTCTCTTTGTTATTCGTCTACTGGTAATTCCTACTGCCTTGTA
GCGGGGAAATGCTGGGCCCAGATCAGCTACTAGAGCTCAGCCTTATCGAA
ACCGAAGCGGGAATGGCACCACTACGTGGCGTTATGATGGAGCTTGAGGA
TGGCGCATTCCCCTTGCTTTCTAAGGTCACTGCGACTACAGACCTCCATG
AAGGCTTTGGCGATATCTCGTTTGCCATGCTTATCGGAGCACAACCGCGC
ACCAAGGGGATGGAACGTTCCGATCTTATGGCTGCAAATGCGAAGATCTT
TGCCGAACAAGGTAAGGCCTTGAACGAAACTGCCGCGGAGAACGCCAAGA
TTCTTGTGGTTGGTAATCCTGCCAACACCAATGCGCTCATCGCATCTGAA
AACGCGCCGGATATGTGGCCGGAACAGTTCATTGCAATGACTCGTCTCGA
CCAGTCTCGCGCAAAGGCTTTATTGGCTGAAAAAGCGGATGTTCCTGTCA
AGGACGTCGACCGCGTGATTATCTGGGGTAACCATTCTGCCACGCAATAT
CCTGATCTTTCCCATGCTCGCATTGGTGGCAAATGGGCTAAGTCAATTGT
CACCGACGAAAAGTGGATCAAGGAAGACTTCATTCCGCGTGTCCAGAAGC
GAGGCGCTGAGGTGATTGGCGCTCGAGGCGCGTCATCAGCAGCCTCGGCC
GCCTCAGCGGCACTTGATACAATCAGAGACTTGCATCAAGGATCGGACGA
GGAGTGGCTTTCAAATGCCGTTGTGTCTGACGGAAGCTACGGAATCACGA
AAGGTATTTGGTACTCGGTGCCAACAGTGTGTAGGGGAGATTCTCACTTC
CGACGTGTTCAGCGCCTGCCTATTGATGAGTTTTCAGCTCAGATGATGAG
CAAAACCGAGAAAGAGCTGTTGGACGAACGTGACTCTGTTCGCCATTTGT
TGCCGGGACACGAGATGAAACCAGTATCCTGGAATGTTTTGGAATCACTT
CAGGAATCATTCGAGGCTGGAGATATGGCGAAGGTAGATAAGTTAGCTTC
AGAATTGCCTGAATCCATGCAAAAGAGCGTGAATGAGGCAAAGGCTGTCG
CCTAA

Coding sequence (CDS) from alignment at NODE_85_length_54060_cov_4.846356:43070..44574+

>Gcaud7372.t1 ID=Gcaud7372.t1|Name=Gcaud7372.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1182bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:43070..44574+ (Gracilaria caudata M_176_S67 male)
ATGCGCCTCGGCGCTTCAAGATCGCTGCGTGGACTGGCAACCAAGACCGA
TCTTCTCCCTCCTCTCAAGATTGCTGTCACCGGAGCTGCAGGTCAAATCG
GCTATGCTCTTGTCATGCGTATTGCTAGCGGGGAAATGCTGGGCCCAGAT
CAGCTACTAGAGCTCAGCCTTATCGAAACCGAAGCGGGAATGGCACCACT
ACGTGGCGTTATGATGGAGCTTGAGGATGGCGCATTCCCCTTGCTTTCTA
AGGTCACTGCGACTACAGACCTCCATGAAGGCTTTGGCGATATCTCGTTT
GCCATGCTTATCGGAGCACAACCGCGCACCAAGGGGATGGAACGTTCCGA
TCTTATGGCTGCAAATGCGAAGATCTTTGCCGAACAAGGTAAGGCCTTGA
ACGAAACTGCCGCGGAGAACGCCAAGATTCTTGTGGTTGGTAATCCTGCC
AACACCAATGCGCTCATCGCATCTGAAAACGCGCCGGATATGTGGCCGGA
ACAGTTCATTGCAATGACTCGTCTCGACCAGTCTCGCGCAAAGGCTTTAT
TGGCTGAAAAAGCGGATGTTCCTGTCAAGGACGTCGACCGCGTGATTATC
TGGGGTAACCATTCTGCCACGCAATATCCTGATCTTTCCCATGCTCGCAT
TGGTGGCAAATGGGCTAAGTCAATTGTCACCGACGAAAAGTGGATCAAGG
AAGACTTCATTCCGCGTGTCCAGAAGCGAGGCGCTGAGGTGATTGGCGCT
CGAGGCGCGTCATCAGCAGCCTCGGCCGCCTCAGCGGCACTTGATACAAT
CAGAGACTTGCATCAAGGATCGGACGAGGAGTGGCTTTCAAATGCCGTTG
TGTCTGACGGAAGCTACGGAATCACGAAAGGTATTTGGTACTCGGTGCCA
ACAGTGTGTAGGGGAGATTCTCACTTCCGACGTGTTCAGCGCCTGCCTAT
TGATGAGTTTTCAGCTCAGATGATGAGCAAAACCGAGAAAGAGCTGTTGG
ACGAACGTGACTCTGTTCGCCATTTGTTGCCGGGACACGAGATGAAACCA
GTATCCTGGAATGTTTTGGAATCACTTCAGGAATCATTCGAGGCTGGAGA
TATGGCGAAGGTAGATAAGTTAGCTTCAGAATTGCCTGAATCCATGCAAA
AGAGCGTGAATGAGGCAAAGGCTGTCGCCTAA