Gcaud7362.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7362.t1
Unique Name	Gcaud7362.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	790

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_85_length_54060_cov_4.846356	contig	NODE_85_length_54060_cov_4.846356:9931..12300 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_04193T0
PFAMs	HtrL_YibB
Max annot lvl	2759\|Eukaryota
Evalue	1e-58
EggNOG OGs	28KVY@1\|root,2RXKG@2759\|Eukaryota
Description	Bacterial protein of unknown function (HtrL_YibB)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7362	Gcaud7362	Gracilaria caudata M_176_S67 male	gene	NODE_85_length_54060_cov_4.846356 9931..12300 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7362.t1.stop1	Gcaud7362.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_85_length_54060_cov_4.846356 9931..9933 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7362.t1.CDS1	Gcaud7362.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 9931..12300 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7362.t1.exon1	Gcaud7362.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 9931..12300 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7362.t1.start1	Gcaud7362.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_85_length_54060_cov_4.846356 12298..12300 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7362.t1	Gcaud7362.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_85_length_54060_cov_4.846356 9931..12300 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_85_length_54060_cov_4.846356:9931..12300-
coding sequence from alignment at NODE_85_length_54060_cov_4.846356:9931..12300-

mRNA sequence

>Gcaud7362.t1 ID=Gcaud7362.t1|Name=Gcaud7362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=790bp
MPAFSATLPRRRPVRTVFKPVSSKRSSLRYRLTQANPVFLTFVVTAIGLA
LLISSSVFGFFRSAPPSQISAVVLFHGELKSFQHSLKTWHHNGLLDLVDE
VLIFVNGATSLSQRSALSPNNIPLFFGLPQHKRRIVTSAKNLPLGLAISR
MVRAARSKYVLLLEKDWALIENTATTQSRMLYSRQLLESRIADVVRFRHR
HNPGIPLHALIMHYGREQSILTIQKNLLCYVHHWQPDPPSMFPGHGRITE
CKKPRQIPNNFHDSVYCASSEYCQWTNNPCLFDKKWFIGNVLDEFEKEYE
IEHDKYGDSSPFLDFEYYTNWRSYAWTDKNFTVALGTGLFSHDERQEQKY
FNTFWYAHYRLTVDLEELRDQYLKNESSFKALGGVHYDPQSPYPLTLRER
YPVEFVRKYQWPDVYTGTLDDQRSMIDKVYKRFLKEHRALTDHKQEREDK
ETSRVSWRSYITSIHQQVEKAMLLVPPEQPHEMNITLVTTLLDIGRAGLG
EDGYQFRRDFRMYLDAMQNWLAHEYPKVVYTTEEIAGELRKNMSDEAKNS
TVFEYTTREELRTRWLGPDNYDLVQEIRKSKEWLDRASWLENSPQAGLES
YNPLVMSKMFMMRHAARTNHWNTTHFLFLDAKHNCQNPKVMNPKNDHIIR
AHMFDKLLVTHFDYTPSTEVHGFEYSAFNQYCNIENATEQQNVKVGRGGI
FGGSAFVLEYITAIYDVALTATLREGLMGTEENIFSIIMYQVPQYVDGFN
NNWACPENVAKDHYCESMRDHQGYNCAIFDWVARDAAGE*

spliced messenger RNA

>Gcaud7362.t1 ID=Gcaud7362.t1|Name=Gcaud7362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2370bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:9931..12300- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGCCTTCTCCGCTACGCTGCCGCGCCGACGCCCGGTGCGTACCGT
GTTCAAGCCTGTCTCGTCCAAACGCTCATCGCTACGTTACAGACTTACCC
AAGCCAATCCAGTCTTCCTGACCTTCGTTGTCACAGCCATCGGTCTAGCG
TTATTGATATCTTCCTCTGTCTTTGGCTTCTTTCGCTCCGCTCCTCCGTC
TCAGATCTCGGCCGTCGTTCTGTTTCATGGCGAGCTCAAGTCCTTTCAAC
ATTCGTTGAAGACATGGCACCACAACGGACTGCTCGACTTGGTCGATGAG
GTGCTCATTTTCGTCAATGGTGCCACGTCACTCTCTCAACGCTCCGCGCT
TTCGCCCAATAACATTCCACTCTTCTTTGGTCTTCCTCAACACAAGCGGC
GCATTGTCACCTCAGCCAAGAACCTTCCCTTGGGGCTTGCCATCTCGCGT
ATGGTGCGCGCCGCGCGTTCCAAGTATGTGCTGCTGCTCGAGAAGGACTG
GGCGTTGATTGAGAACACTGCCACCACCCAGTCGCGAATGTTGTACTCGA
GGCAACTCTTGGAATCAAGAATTGCGGACGTCGTTCGTTTCAGACATCGT
CACAATCCTGGCATTCCGTTGCACGCACTCATTATGCATTACGGTCGGGA
GCAGTCCATTCTAACCATTCAGAAGAATCTGTTATGCTATGTGCATCACT
GGCAGCCCGACCCACCATCCATGTTCCCTGGTCACGGACGAATTACTGAG
TGTAAAAAGCCACGTCAAATACCCAACAACTTTCACGACTCCGTGTATTG
CGCTTCTTCCGAGTACTGTCAGTGGACAAACAATCCGTGTTTGTTCGACA
AGAAATGGTTCATCGGGAACGTCCTGGATGAGTTTGAGAAAGAGTACGAG
ATTGAACATGATAAGTATGGAGATTCATCTCCCTTTCTGGACTTCGAGTA
TTACACCAATTGGCGTTCGTATGCCTGGACTGATAAGAACTTCACGGTTG
CGTTAGGAACAGGTCTCTTCAGTCACGATGAGCGTCAGGAGCAGAAGTAC
TTCAACACATTTTGGTATGCTCATTATCGCCTCACTGTTGATCTCGAAGA
ATTGAGAGACCAATACCTGAAAAACGAATCTTCCTTCAAAGCGCTTGGAG
GCGTGCATTATGATCCACAGAGTCCATACCCGCTGACGTTGAGGGAAAGA
TACCCGGTTGAATTTGTGCGCAAGTACCAATGGCCGGATGTCTACACTGG
AACTCTGGATGATCAGCGATCAATGATTGATAAGGTATACAAGCGCTTCC
TTAAGGAGCACAGAGCGTTGACAGACCACAAACAAGAGAGAGAAGACAAG
GAGACCAGTCGTGTGTCTTGGCGATCTTACATCACGAGTATTCACCAACA
AGTCGAAAAAGCCATGCTCCTTGTGCCGCCGGAACAGCCTCATGAAATGA
ACATCACCCTCGTAACGACCCTTTTAGACATTGGTCGAGCTGGTCTGGGT
GAGGACGGATACCAGTTTCGACGAGATTTCCGAATGTATCTGGATGCCAT
GCAAAACTGGTTGGCGCACGAGTATCCAAAAGTTGTGTACACCACCGAGG
AGATCGCGGGTGAGCTGAGAAAGAACATGAGTGACGAAGCAAAGAATTCC
ACTGTGTTCGAGTACACCACCCGAGAGGAGCTGCGCACACGATGGCTTGG
TCCGGATAACTATGATTTGGTGCAGGAGATCCGGAAGTCGAAGGAATGGT
TGGACCGGGCGTCGTGGCTCGAGAACTCGCCACAAGCTGGGTTGGAAAGT
TATAACCCGCTGGTTATGTCCAAGATGTTTATGATGCGGCATGCAGCGCG
CACGAATCACTGGAATACCACACACTTTTTATTCTTGGACGCCAAGCACA
ACTGTCAGAATCCCAAAGTGATGAACCCCAAAAATGATCATATCATTCGC
GCTCACATGTTTGACAAACTGCTTGTGACGCACTTTGATTACACACCAAG
CACCGAAGTGCATGGATTTGAGTATTCAGCTTTCAATCAGTACTGCAACA
TAGAAAACGCGACCGAGCAACAAAACGTTAAGGTTGGCAGAGGGGGGATC
TTTGGCGGTTCGGCATTCGTGCTGGAATACATCACAGCGATTTATGACGT
TGCTTTGACGGCAACTCTTCGCGAGGGTTTGATGGGAACGGAGGAGAATA
TATTCTCTATCATTATGTATCAGGTACCACAGTATGTTGATGGCTTCAAC
AACAATTGGGCATGTCCAGAGAATGTTGCAAAGGATCATTATTGCGAAAG
TATGCGGGATCATCAAGGCTACAATTGTGCGATCTTTGACTGGGTAGCTC
GAGACGCTGCAGGTGAATAA

protein sequence of Gcaud7362.t1

>Gcaud7362.t1 ID=Gcaud7362.t1|Name=Gcaud7362.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=790bp
MPAFSATLPRRRPVRTVFKPVSSKRSSLRYRLTQANPVFLTFVVTAIGLA
LLISSSVFGFFRSAPPSQISAVVLFHGELKSFQHSLKTWHHNGLLDLVDE
VLIFVNGATSLSQRSALSPNNIPLFFGLPQHKRRIVTSAKNLPLGLAISR
MVRAARSKYVLLLEKDWALIENTATTQSRMLYSRQLLESRIADVVRFRHR
HNPGIPLHALIMHYGREQSILTIQKNLLCYVHHWQPDPPSMFPGHGRITE
CKKPRQIPNNFHDSVYCASSEYCQWTNNPCLFDKKWFIGNVLDEFEKEYE
IEHDKYGDSSPFLDFEYYTNWRSYAWTDKNFTVALGTGLFSHDERQEQKY
FNTFWYAHYRLTVDLEELRDQYLKNESSFKALGGVHYDPQSPYPLTLRER
YPVEFVRKYQWPDVYTGTLDDQRSMIDKVYKRFLKEHRALTDHKQEREDK
ETSRVSWRSYITSIHQQVEKAMLLVPPEQPHEMNITLVTTLLDIGRAGLG
EDGYQFRRDFRMYLDAMQNWLAHEYPKVVYTTEEIAGELRKNMSDEAKNS
TVFEYTTREELRTRWLGPDNYDLVQEIRKSKEWLDRASWLENSPQAGLES
YNPLVMSKMFMMRHAARTNHWNTTHFLFLDAKHNCQNPKVMNPKNDHIIR
AHMFDKLLVTHFDYTPSTEVHGFEYSAFNQYCNIENATEQQNVKVGRGGI
FGGSAFVLEYITAIYDVALTATLREGLMGTEENIFSIIMYQVPQYVDGFN
NNWACPENVAKDHYCESMRDHQGYNCAIFDWVARDAAGE*

mRNA from alignment at NODE_85_length_54060_cov_4.846356:9931..12300-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7362.t1 ID=Gcaud7362.t1|Name=Gcaud7362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2370bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:9931..12300- (Gracilaria caudata M_176_S67 male)
ATGCCAGCCTTCTCCGCTACGCTGCCGCGCCGACGCCCGGTGCGTACCGT
GTTCAAGCCTGTCTCGTCCAAACGCTCATCGCTACGTTACAGACTTACCC
AAGCCAATCCAGTCTTCCTGACCTTCGTTGTCACAGCCATCGGTCTAGCG
TTATTGATATCTTCCTCTGTCTTTGGCTTCTTTCGCTCCGCTCCTCCGTC
TCAGATCTCGGCCGTCGTTCTGTTTCATGGCGAGCTCAAGTCCTTTCAAC
ATTCGTTGAAGACATGGCACCACAACGGACTGCTCGACTTGGTCGATGAG
GTGCTCATTTTCGTCAATGGTGCCACGTCACTCTCTCAACGCTCCGCGCT
TTCGCCCAATAACATTCCACTCTTCTTTGGTCTTCCTCAACACAAGCGGC
GCATTGTCACCTCAGCCAAGAACCTTCCCTTGGGGCTTGCCATCTCGCGT
ATGGTGCGCGCCGCGCGTTCCAAGTATGTGCTGCTGCTCGAGAAGGACTG
GGCGTTGATTGAGAACACTGCCACCACCCAGTCGCGAATGTTGTACTCGA
GGCAACTCTTGGAATCAAGAATTGCGGACGTCGTTCGTTTCAGACATCGT
CACAATCCTGGCATTCCGTTGCACGCACTCATTATGCATTACGGTCGGGA
GCAGTCCATTCTAACCATTCAGAAGAATCTGTTATGCTATGTGCATCACT
GGCAGCCCGACCCACCATCCATGTTCCCTGGTCACGGACGAATTACTGAG
TGTAAAAAGCCACGTCAAATACCCAACAACTTTCACGACTCCGTGTATTG
CGCTTCTTCCGAGTACTGTCAGTGGACAAACAATCCGTGTTTGTTCGACA
AGAAATGGTTCATCGGGAACGTCCTGGATGAGTTTGAGAAAGAGTACGAG
ATTGAACATGATAAGTATGGAGATTCATCTCCCTTTCTGGACTTCGAGTA
TTACACCAATTGGCGTTCGTATGCCTGGACTGATAAGAACTTCACGGTTG
CGTTAGGAACAGGTCTCTTCAGTCACGATGAGCGTCAGGAGCAGAAGTAC
TTCAACACATTTTGGTATGCTCATTATCGCCTCACTGTTGATCTCGAAGA
ATTGAGAGACCAATACCTGAAAAACGAATCTTCCTTCAAAGCGCTTGGAG
GCGTGCATTATGATCCACAGAGTCCATACCCGCTGACGTTGAGGGAAAGA
TACCCGGTTGAATTTGTGCGCAAGTACCAATGGCCGGATGTCTACACTGG
AACTCTGGATGATCAGCGATCAATGATTGATAAGGTATACAAGCGCTTCC
TTAAGGAGCACAGAGCGTTGACAGACCACAAACAAGAGAGAGAAGACAAG
GAGACCAGTCGTGTGTCTTGGCGATCTTACATCACGAGTATTCACCAACA
AGTCGAAAAAGCCATGCTCCTTGTGCCGCCGGAACAGCCTCATGAAATGA
ACATCACCCTCGTAACGACCCTTTTAGACATTGGTCGAGCTGGTCTGGGT
GAGGACGGATACCAGTTTCGACGAGATTTCCGAATGTATCTGGATGCCAT
GCAAAACTGGTTGGCGCACGAGTATCCAAAAGTTGTGTACACCACCGAGG
AGATCGCGGGTGAGCTGAGAAAGAACATGAGTGACGAAGCAAAGAATTCC
ACTGTGTTCGAGTACACCACCCGAGAGGAGCTGCGCACACGATGGCTTGG
TCCGGATAACTATGATTTGGTGCAGGAGATCCGGAAGTCGAAGGAATGGT
TGGACCGGGCGTCGTGGCTCGAGAACTCGCCACAAGCTGGGTTGGAAAGT
TATAACCCGCTGGTTATGTCCAAGATGTTTATGATGCGGCATGCAGCGCG
CACGAATCACTGGAATACCACACACTTTTTATTCTTGGACGCCAAGCACA
ACTGTCAGAATCCCAAAGTGATGAACCCCAAAAATGATCATATCATTCGC
GCTCACATGTTTGACAAACTGCTTGTGACGCACTTTGATTACACACCAAG
CACCGAAGTGCATGGATTTGAGTATTCAGCTTTCAATCAGTACTGCAACA
TAGAAAACGCGACCGAGCAACAAAACGTTAAGGTTGGCAGAGGGGGGATC
TTTGGCGGTTCGGCATTCGTGCTGGAATACATCACAGCGATTTATGACGT
TGCTTTGACGGCAACTCTTCGCGAGGGTTTGATGGGAACGGAGGAGAATA
TATTCTCTATCATTATGTATCAGGTACCACAGTATGTTGATGGCTTCAAC
AACAATTGGGCATGTCCAGAGAATGTTGCAAAGGATCATTATTGCGAAAG
TATGCGGGATCATCAAGGCTACAATTGTGCGATCTTTGACTGGGTAGCTC
GAGACGCTGCAGGTGAATAA

Coding sequence (CDS) from alignment at NODE_85_length_54060_cov_4.846356:9931..12300-

>Gcaud7362.t1 ID=Gcaud7362.t1|Name=Gcaud7362.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2370bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:9931..12300- (Gracilaria caudata M_176_S67 male)
ATGCCAGCCTTCTCCGCTACGCTGCCGCGCCGACGCCCGGTGCGTACCGT
GTTCAAGCCTGTCTCGTCCAAACGCTCATCGCTACGTTACAGACTTACCC
AAGCCAATCCAGTCTTCCTGACCTTCGTTGTCACAGCCATCGGTCTAGCG
TTATTGATATCTTCCTCTGTCTTTGGCTTCTTTCGCTCCGCTCCTCCGTC
TCAGATCTCGGCCGTCGTTCTGTTTCATGGCGAGCTCAAGTCCTTTCAAC
ATTCGTTGAAGACATGGCACCACAACGGACTGCTCGACTTGGTCGATGAG
GTGCTCATTTTCGTCAATGGTGCCACGTCACTCTCTCAACGCTCCGCGCT
TTCGCCCAATAACATTCCACTCTTCTTTGGTCTTCCTCAACACAAGCGGC
GCATTGTCACCTCAGCCAAGAACCTTCCCTTGGGGCTTGCCATCTCGCGT
ATGGTGCGCGCCGCGCGTTCCAAGTATGTGCTGCTGCTCGAGAAGGACTG
GGCGTTGATTGAGAACACTGCCACCACCCAGTCGCGAATGTTGTACTCGA
GGCAACTCTTGGAATCAAGAATTGCGGACGTCGTTCGTTTCAGACATCGT
CACAATCCTGGCATTCCGTTGCACGCACTCATTATGCATTACGGTCGGGA
GCAGTCCATTCTAACCATTCAGAAGAATCTGTTATGCTATGTGCATCACT
GGCAGCCCGACCCACCATCCATGTTCCCTGGTCACGGACGAATTACTGAG
TGTAAAAAGCCACGTCAAATACCCAACAACTTTCACGACTCCGTGTATTG
CGCTTCTTCCGAGTACTGTCAGTGGACAAACAATCCGTGTTTGTTCGACA
AGAAATGGTTCATCGGGAACGTCCTGGATGAGTTTGAGAAAGAGTACGAG
ATTGAACATGATAAGTATGGAGATTCATCTCCCTTTCTGGACTTCGAGTA
TTACACCAATTGGCGTTCGTATGCCTGGACTGATAAGAACTTCACGGTTG
CGTTAGGAACAGGTCTCTTCAGTCACGATGAGCGTCAGGAGCAGAAGTAC
TTCAACACATTTTGGTATGCTCATTATCGCCTCACTGTTGATCTCGAAGA
ATTGAGAGACCAATACCTGAAAAACGAATCTTCCTTCAAAGCGCTTGGAG
GCGTGCATTATGATCCACAGAGTCCATACCCGCTGACGTTGAGGGAAAGA
TACCCGGTTGAATTTGTGCGCAAGTACCAATGGCCGGATGTCTACACTGG
AACTCTGGATGATCAGCGATCAATGATTGATAAGGTATACAAGCGCTTCC
TTAAGGAGCACAGAGCGTTGACAGACCACAAACAAGAGAGAGAAGACAAG
GAGACCAGTCGTGTGTCTTGGCGATCTTACATCACGAGTATTCACCAACA
AGTCGAAAAAGCCATGCTCCTTGTGCCGCCGGAACAGCCTCATGAAATGA
ACATCACCCTCGTAACGACCCTTTTAGACATTGGTCGAGCTGGTCTGGGT
GAGGACGGATACCAGTTTCGACGAGATTTCCGAATGTATCTGGATGCCAT
GCAAAACTGGTTGGCGCACGAGTATCCAAAAGTTGTGTACACCACCGAGG
AGATCGCGGGTGAGCTGAGAAAGAACATGAGTGACGAAGCAAAGAATTCC
ACTGTGTTCGAGTACACCACCCGAGAGGAGCTGCGCACACGATGGCTTGG
TCCGGATAACTATGATTTGGTGCAGGAGATCCGGAAGTCGAAGGAATGGT
TGGACCGGGCGTCGTGGCTCGAGAACTCGCCACAAGCTGGGTTGGAAAGT
TATAACCCGCTGGTTATGTCCAAGATGTTTATGATGCGGCATGCAGCGCG
CACGAATCACTGGAATACCACACACTTTTTATTCTTGGACGCCAAGCACA
ACTGTCAGAATCCCAAAGTGATGAACCCCAAAAATGATCATATCATTCGC
GCTCACATGTTTGACAAACTGCTTGTGACGCACTTTGATTACACACCAAG
CACCGAAGTGCATGGATTTGAGTATTCAGCTTTCAATCAGTACTGCAACA
TAGAAAACGCGACCGAGCAACAAAACGTTAAGGTTGGCAGAGGGGGGATC
TTTGGCGGTTCGGCATTCGTGCTGGAATACATCACAGCGATTTATGACGT
TGCTTTGACGGCAACTCTTCGCGAGGGTTTGATGGGAACGGAGGAGAATA
TATTCTCTATCATTATGTATCAGGTACCACAGTATGTTGATGGCTTCAAC
AACAATTGGGCATGTCCAGAGAATGTTGCAAAGGATCATTATTGCGAAAG
TATGCGGGATCATCAAGGCTACAATTGTGCGATCTTTGACTGGGTAGCTC
GAGACGCTGCAGGTGAATAA