Gcaud7360.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7360.t1
Unique NameGcaud7360.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length641
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_85_length_54060_cov_4.846356contigNODE_85_length_54060_cov_4.846356:2220..6276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_02838T0
PFAMsABC_membrane,ABC_tran
Max annot lvl33154|Opisthokonta
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Evalue8.95e-128
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota,38E88@33154|Opisthokonta
EC3.6.3.44
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryQ
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7360Gcaud7360Gracilaria caudata M_176_S67 malegeneNODE_85_length_54060_cov_4.846356 2220..6276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7360.t1Gcaud7360.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_85_length_54060_cov_4.846356 2220..6276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7360.t1.start1Gcaud7360.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_85_length_54060_cov_4.846356 2220..2222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7360.t1.CDS1Gcaud7360.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_85_length_54060_cov_4.846356 2220..3300 +
Gcaud7360.t1.CDS2Gcaud7360.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_85_length_54060_cov_4.846356 3413..3662 +
Gcaud7360.t1.CDS3Gcaud7360.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_85_length_54060_cov_4.846356 5685..6276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7360.t1.exon1Gcaud7360.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_85_length_54060_cov_4.846356 2220..3300 +
Gcaud7360.t1.exon2Gcaud7360.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_85_length_54060_cov_4.846356 3413..3662 +
Gcaud7360.t1.exon3Gcaud7360.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_85_length_54060_cov_4.846356 5685..6276 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7360.t1.intron1Gcaud7360.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_85_length_54060_cov_4.846356 3301..3412 +
Gcaud7360.t1.intron2Gcaud7360.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_85_length_54060_cov_4.846356 3663..5684 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7360.t1.stop1Gcaud7360.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_85_length_54060_cov_4.846356 6274..6276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7360.t1 ID=Gcaud7360.t1|Name=Gcaud7360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=641bp
MDGDAIPETNGSSTPPDQTKSSDDQQGKKSIFDCFKKKESDDKKDSSETQ
PEPSKPPPVKFRELFRYANRTEKIYIIISCISAIIHGAIQPMFTILFGGI
IDEFQGTTQTQPDPSILDGITDQVGDVAKWFLLLGAVAFVTSLIQVRFQL
IAAQRICARLRRLYFESLLSQDFTWYGQEDGGELTARVAGDVNLIQAGIG
DKVTSAVQFIAMFIVGFIVAFIYGPLLTLVMLSILPLMMAGGAVFAKMAA
ESTGEGVGAYGGAGAVASEVIGLIRVVTAYNGQETEAKRYEDELRKAYKA
DVKKGFVTGLGIGFTMFVIFCGYAIAFTFGANRVRGGSITAGDILVTFFS
VFIASFSIGQAAPSFKAFAVAQGAAPRVYEVIGRESEINPLNEDDGDIIM
DFKGNVSFNNVNFDYQHRVADDLESDEERRFVLNNFTLNVPSGTGSLLID
DSNIVEYDVKWMRKHLGLVAQEPDLFNRSVRDNIAYGLDHVDGTPVTDEM
IIEAAKAANADSFITELEEGYDTVVGARGSKLSGGQRQRVAIARAIVRQP
RILVLDEATSALDAVSERVVQEALDRVGKGRTTIAVAHRLSTVKDADAIA
VVGRGKILEIGRHEELLRIENGEYANLVKNQLSGGEESGE*
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spliced messenger RNA

>Gcaud7360.t1 ID=Gcaud7360.t1|Name=Gcaud7360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:2220..6276+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGTGACGCCATCCCCGAAACCAACGGGTCTTCCACTCCGCCTGA
TCAGACCAAATCTTCTGACGATCAACAGGGAAAGAAATCTATTTTTGATT
GCTTCAAGAAGAAAGAAAGCGACGACAAGAAGGACTCATCAGAGACACAA
CCCGAACCCTCAAAGCCTCCGCCCGTCAAGTTCCGAGAACTATTTCGATA
TGCGAACCGTACAGAGAAGATATACATTATCATTTCATGCATTTCCGCGA
TAATTCACGGCGCTATACAGCCAATGTTCACCATTCTATTCGGTGGTATT
ATTGATGAATTTCAAGGAACCACTCAAACTCAACCTGATCCATCCATACT
CGATGGAATAACAGATCAGGTTGGCGATGTTGCTAAATGGTTTCTTTTGC
TGGGTGCTGTTGCTTTCGTCACCAGTCTCATACAAGTTCGCTTCCAACTC
ATTGCAGCTCAGCGAATTTGTGCCCGTTTGCGTCGCTTGTATTTCGAATC
GCTTCTGAGCCAGGATTTCACGTGGTATGGACAGGAGGACGGAGGGGAGC
TTACCGCAAGAGTAGCTGGTGATGTGAACTTGATTCAAGCAGGCATCGGT
GACAAGGTCACCAGTGCGGTGCAGTTTATTGCCATGTTCATTGTCGGCTT
TATCGTTGCCTTTATCTATGGGCCTTTGTTGACATTGGTTATGCTCTCCA
TTCTGCCCTTGATGATGGCCGGTGGCGCTGTGTTCGCCAAAATGGCTGCG
GAAAGTACCGGAGAGGGCGTAGGCGCGTATGGTGGTGCTGGCGCCGTTGC
GAGTGaggtcataggtcttattcgtgtcgtcaccgcgtacaacggccagg
aaacggaagcaaagcgatatgaggacgagctacggaaggcatacaaagct
gatgtcaagaagggttttgtcactggtttgggcattgggttcaccatgtt
cgttatcttctgcggatatgccatagccttcacgttcggtgcgaaccgag
ttcgaggtggatccatcaccgctggtgatattctcgttacttttttctcc
gtcttcatcgcgtcgttttctatcgggcaagCGGCACCGTCTTTCAAAGC
CTTTGCTGTGGCACAAGGCGCAGCCCCAAGAGTGTATGAAGTTATTGGCA
GAGAATCTGAAATCAACCCCCTGAACGAGGATGACGGAGATATTATTATG
GACTTCAAGGGAAACGTAAGCTTCAATAACGTAAACTTCGATTACCAGCA
CCGGGTTGCTGATGATTTGGAAAGTGACGAAGAAAGGCGCTTTGTGCTGA
ATAACTTCACGCTCAACGTTCCATCCggcacCGGAAGTTTGCTGATCGAT
GACAGCAACATTGTGGAGTACGATGTGAAATGGATGCGCAAGCATCTGGG
ACTGGTGGCGCAAGAACCGGATCTGTTCAACCGCTCGGTGCGCGATAACA
TCGCGTACGGACTGGACCACGTGGATGGCACGCCCGTGACAGACGAAATG
ATTATTGAGGCGGCTAAAGCGGCGAATGCTGACTCGTTCATCACGGAACT
GGAGGAGGGATACGACACGGTGGTGGGGGCGCGCGGCAGCAAACTGTCCG
GCGGACAGCGCCAGCGGGTGGCGATCGCGCGCGCGATCGTGCGACAGCCG
AGAATTCTGGTGCTGGACGAGGCTACGTCGGCGCTTGACGCGGTGTCGGA
GCGCGTGGTGCAGGAGGCCTTGGACCGGGTGGGCAAGGGACGCACGACGA
TTGCTGTGGCTCACCGTCTGTCGACGGTGAAGGACGCTGACGCGATCGCG
GTGGTGGGGCGCGGGAAGATCTTGGAGATCGGACGACATGAAGAGTTGCT
GAGGATTGAGAACGGGGAGTACGCGAATCTGGTGAAGAACCAATTGAGCG
GTGGGGAGGAGAGTGGGGAGTGA
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protein sequence of Gcaud7360.t1

>Gcaud7360.t1 ID=Gcaud7360.t1|Name=Gcaud7360.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=641bp
MDGDAIPETNGSSTPPDQTKSSDDQQGKKSIFDCFKKKESDDKKDSSETQ
PEPSKPPPVKFRELFRYANRTEKIYIIISCISAIIHGAIQPMFTILFGGI
IDEFQGTTQTQPDPSILDGITDQVGDVAKWFLLLGAVAFVTSLIQVRFQL
IAAQRICARLRRLYFESLLSQDFTWYGQEDGGELTARVAGDVNLIQAGIG
DKVTSAVQFIAMFIVGFIVAFIYGPLLTLVMLSILPLMMAGGAVFAKMAA
ESTGEGVGAYGGAGAVASEVIGLIRVVTAYNGQETEAKRYEDELRKAYKA
DVKKGFVTGLGIGFTMFVIFCGYAIAFTFGANRVRGGSITAGDILVTFFS
VFIASFSIGQAAPSFKAFAVAQGAAPRVYEVIGRESEINPLNEDDGDIIM
DFKGNVSFNNVNFDYQHRVADDLESDEERRFVLNNFTLNVPSGTGSLLID
DSNIVEYDVKWMRKHLGLVAQEPDLFNRSVRDNIAYGLDHVDGTPVTDEM
IIEAAKAANADSFITELEEGYDTVVGARGSKLSGGQRQRVAIARAIVRQP
RILVLDEATSALDAVSERVVQEALDRVGKGRTTIAVAHRLSTVKDADAIA
VVGRGKILEIGRHEELLRIENGEYANLVKNQLSGGEESGE*
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mRNA from alignment at NODE_85_length_54060_cov_4.846356:2220..6276+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7360.t1 ID=Gcaud7360.t1|Name=Gcaud7360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=4057bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:2220..6276+ (Gracilaria caudata M_176_S67 male)
ATGGACGGTGACGCCATCCCCGAAACCAACGGGTCTTCCACTCCGCCTGA TCAGACCAAATCTTCTGACGATCAACAGGGAAAGAAATCTATTTTTGATT GCTTCAAGAAGAAAGAAAGCGACGACAAGAAGGACTCATCAGAGACACAA CCCGAACCCTCAAAGCCTCCGCCCGTCAAGTTCCGAGAACTATTTCGATA TGCGAACCGTACAGAGAAGATATACATTATCATTTCATGCATTTCCGCGA TAATTCACGGCGCTATACAGCCAATGTTCACCATTCTATTCGGTGGTATT ATTGATGAATTTCAAGGAACCACTCAAACTCAACCTGATCCATCCATACT CGATGGAATAACAGATCAGGTTGGCGATGTTGCTAAATGGTTTCTTTTGC TGGGTGCTGTTGCTTTCGTCACCAGTCTCATACAAGTTCGCTTCCAACTC ATTGCAGCTCAGCGAATTTGTGCCCGTTTGCGTCGCTTGTATTTCGAATC GCTTCTGAGCCAGGATTTCACGTGGTATGGACAGGAGGACGGAGGGGAGC TTACCGCAAGAGTAGCTGGTGATGTGAACTTGATTCAAGCAGGCATCGGT GACAAGGTCACCAGTGCGGTGCAGTTTATTGCCATGTTCATTGTCGGCTT TATCGTTGCCTTTATCTATGGGCCTTTGTTGACATTGGTTATGCTCTCCA TTCTGCCCTTGATGATGGCCGGTGGCGCTGTGTTCGCCAAAATGGCTGCG GAAAGTACCGGAGAGGGCGTAGGCGCGTATGGTGGTGCTGGCGCCGTTGC GAGTGaggtcataggtcttattcgtgtcgtcaccgcgtacaacggccagg aaacggaagcaaagcgatatgaggacgagctacggaaggcatacaaagct gatgtcaagaagggttttgtcactggtttgggcattgggttcaccatgtt cgttatcttctgcggatatgccatagccttcacgttcggtgcgaaccgag ttcgaggtggatccatcaccgctggtgatattctcgttacttttttctcc gtcttcatcgcgtcgttttctatcgggcaaggtaacgtattcgtcatcaa caaattcattgcgcggttatacttgtcattgcacatGTTCTGACAAAGAA TGGGGTTCCTTGTTTCTTTTCTATCTTCTTTTGTTGAAAACAGCGGCACC GTCTTTCAAAGCCTTTGCTGTGGCACAAGGCGCAGCCCCAAGAGTGTATG AAGTTATTGGCAGAGAATCTGAAATCAACCCCCTGAACGAGGATGACGGA GATATTATTATGGACTTCAAGGGAAACGTAAGCTTCAATAACGTAAACTT CGATTACCAGCACCGGGTTGCTGATGATTTGGAAAGTGACGAAGAAAGGC GCTTTGTGCTGAATAACTTCACGCTCAACGTTCCATCCggcacgtcccac gcccttgttggttcatcaggatgtggaaaaagtactactgttcgactcat tgagcgattttatgatgccaacgacggcgcagttacgctcgatggtgttg atgtgcggcaactgaatgttaagtggctgagaagccaaatgggctatgtc ggtcagatgccaacgttgtttgcccgtacaattcgagacaacatcgcttt gggtgcggctatggaagcggttgtagacgagaatacaggaagGAAGGTGC TTCGTCGTATGGAGGTCACGGACGAGGACATTGTTCaagcggcgaagaag gcaaatgcgcacgatttcataatgaagctccctgagaagtatgatacgtt actgggagaaagaggagcccttctgagtggtggtcaaaagcaacgggtat gcatagcacgtgcattaatacggaacccgaagattcttatcctggacgaa gccactgctgcgctggacgctcaatctgagcgaattgtacaaagtgctct tgaaaaggcggcggctggtcgcactaccataacgatcgcgcacaggttga gtaccgtgaaggacgcggacgtgatctcagtcatcgacaagggccatatt gtggaatcaggtacccataatgccctggtggcgattgaagatggcgctta tcgcactctgatcgaacaccaacgtgtcgaagccctgaaagcgaaggaag caaaggaaagttcgacggcaacggaggatgtttcgggtccaacgatcgcc aaggtagctagtacttctatttcccatagcgttcaagtagatggtactgg tgaacagggtgaagaaggtgcagaaagccccgtggagaagggcattatcg cccgtgcgtataaggtcaacagaaacgagtggttctacattctgcttggg atagttggagcagcgctgaacggtgcggctttcccggccatggctatcgt cttctcagacgttatcgaggagattctgagcgaaaacgacaagggcgaga tttcgaagtgggcactgctttacgtagcactaggtggagtctctttcctg ggcaacttcttgcagcactctatgcttgggattagtggagaacgcatgac gtttaagctaagaagagcttcgttccgagcacttttgaagcaggagatgg gcttctttgatatgaaggagaactcgcttggtgccctttcgactcggttg gcaacggaggcgacccaggtgaagggtttgacaggagatgctcttggcac gattgcgttcggtctcagcactgtgctaaccggtttcttgatcgcctaca ttgcgtgctggagagtggcgcttgtggttacatgcgtgttcccattgggg gctatagcacaaatggttcagctgaagatgatgactgggtttgatgcaga ctctgagactcgttacgcagcggctggaactgtggcatctgaggcggtgg acaactttgaaacggtgacgtcaattggtgtgcaagacgtgtttatgaac aagtacaacgaggaaattgataagacaaccaagaacggaagacgaaccgc tctggtggctggaatcgcttttggtgtgtcggagtttattgcacagatgt tgtgggcggtgagcttttgggtggggtcgatatttgtgcgcaatggacgt tgtgatttcgctgagttgatgaaggctgtgactggtcttctcttcggtgg actgatgcttggcaacctgtcgagtacgatgcccgagtggggaaaggcga agattgcagggacgaggatcttcagactactggaccgagaatctaagatt gatccaacagtggaggtggactttaagaagaagattcatggtgacatgcg gttggaaaaggcgtattttgagtatccgacaaggccgaatgtggcggtgc ttcgcggaatgtcggtggaggtgaagagcgggcagactctggcattagtt ggtgcgagtgggTCTGGGAAAAGCACTGTGGTGAGCCTGGTGGAGCGATT CTACGATGTGCGCAGCGGAAGTTTGCTGATCGATGACAGCAACATTGTGG AGTACGATGTGAAATGGATGCGCAAGCATCTGGGACTGGTGGCGCAAGAA CCGGATCTGTTCAACCGCTCGGTGCGCGATAACATCGCGTACGGACTGGA CCACGTGGATGGCACGCCCGTGACAGACGAAATGATTATTGAGGCGGCTA AAGCGGCGAATGCTGACTCGTTCATCACGGAACTGGAGGAGGGATACGAC ACGGTGGTGGGGGCGCGCGGCAGCAAACTGTCCGGCGGACAGCGCCAGCG GGTGGCGATCGCGCGCGCGATCGTGCGACAGCCGAGAATTCTGGTGCTGG ACGAGGCTACGTCGGCGCTTGACGCGGTGTCGGAGCGCGTGGTGCAGGAG GCCTTGGACCGGGTGGGCAAGGGACGCACGACGATTGCTGTGGCTCACCG TCTGTCGACGGTGAAGGACGCTGACGCGATCGCGGTGGTGGGGCGCGGGA AGATCTTGGAGATCGGACGACATGAAGAGTTGCTGAGGATTGAGAACGGG GAGTACGCGAATCTGGTGAAGAACCAATTGAGCGGTGGGGAGGAGAGTGG GGAGTGA
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Coding sequence (CDS) from alignment at NODE_85_length_54060_cov_4.846356:2220..6276+

>Gcaud7360.t1 ID=Gcaud7360.t1|Name=Gcaud7360.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1923bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:2220..6276+ (Gracilaria caudata M_176_S67 male)
ATGGACGGTGACGCCATCCCCGAAACCAACGGGTCTTCCACTCCGCCTGA
TCAGACCAAATCTTCTGACGATCAACAGGGAAAGAAATCTATTTTTGATT
GCTTCAAGAAGAAAGAAAGCGACGACAAGAAGGACTCATCAGAGACACAA
CCCGAACCCTCAAAGCCTCCGCCCGTCAAGTTCCGAGAACTATTTCGATA
TGCGAACCGTACAGAGAAGATATACATTATCATTTCATGCATTTCCGCGA
TAATTCACGGCGCTATACAGCCAATGTTCACCATTCTATTCGGTGGTATT
ATTGATGAATTTCAAGGAACCACTCAAACTCAACCTGATCCATCCATACT
CGATGGAATAACAGATCAGGTTGGCGATGTTGCTAAATGGTTTCTTTTGC
TGGGTGCTGTTGCTTTCGTCACCAGTCTCATACAAGTTCGCTTCCAACTC
ATTGCAGCTCAGCGAATTTGTGCCCGTTTGCGTCGCTTGTATTTCGAATC
GCTTCTGAGCCAGGATTTCACGTGGTATGGACAGGAGGACGGAGGGGAGC
TTACCGCAAGAGTAGCTGGTGATGTGAACTTGATTCAAGCAGGCATCGGT
GACAAGGTCACCAGTGCGGTGCAGTTTATTGCCATGTTCATTGTCGGCTT
TATCGTTGCCTTTATCTATGGGCCTTTGTTGACATTGGTTATGCTCTCCA
TTCTGCCCTTGATGATGGCCGGTGGCGCTGTGTTCGCCAAAATGGCTGCG
GAAAGTACCGGAGAGGGCGTAGGCGCGTATGGTGGTGCTGGCGCCGTTGC
GAGTGaggtcataggtcttattcgtgtcgtcaccgcgtacaacggccagg
aaacggaagcaaagcgatatgaggacgagctacggaaggcatacaaagct
gatgtcaagaagggttttgtcactggtttgggcattgggttcaccatgtt
cgttatcttctgcggatatgccatagccttcacgttcggtgcgaaccgag
ttcgaggtggatccatcaccgctggtgatattctcgttacttttttctcc
gtcttcatcgcgtcgttttctatcgggcaagCGGCACCGTCTTTCAAAGC
CTTTGCTGTGGCACAAGGCGCAGCCCCAAGAGTGTATGAAGTTATTGGCA
GAGAATCTGAAATCAACCCCCTGAACGAGGATGACGGAGATATTATTATG
GACTTCAAGGGAAACGTAAGCTTCAATAACGTAAACTTCGATTACCAGCA
CCGGGTTGCTGATGATTTGGAAAGTGACGAAGAAAGGCGCTTTGTGCTGA
ATAACTTCACGCTCAACGTTCCATCCggcacCGGAAGTTTGCTGATCGAT
GACAGCAACATTGTGGAGTACGATGTGAAATGGATGCGCAAGCATCTGGG
ACTGGTGGCGCAAGAACCGGATCTGTTCAACCGCTCGGTGCGCGATAACA
TCGCGTACGGACTGGACCACGTGGATGGCACGCCCGTGACAGACGAAATG
ATTATTGAGGCGGCTAAAGCGGCGAATGCTGACTCGTTCATCACGGAACT
GGAGGAGGGATACGACACGGTGGTGGGGGCGCGCGGCAGCAAACTGTCCG
GCGGACAGCGCCAGCGGGTGGCGATCGCGCGCGCGATCGTGCGACAGCCG
AGAATTCTGGTGCTGGACGAGGCTACGTCGGCGCTTGACGCGGTGTCGGA
GCGCGTGGTGCAGGAGGCCTTGGACCGGGTGGGCAAGGGACGCACGACGA
TTGCTGTGGCTCACCGTCTGTCGACGGTGAAGGACGCTGACGCGATCGCG
GTGGTGGGGCGCGGGAAGATCTTGGAGATCGGACGACATGAAGAGTTGCT
GAGGATTGAGAACGGGGAGTACGCGAATCTGGTGAAGAACCAATTGAGCG
GTGGGGAGGAGAGTGGGGAGTGA
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