Gcaud736.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud736.t1
Unique Name	Gcaud736.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_661_length_20169_cov_4.503636	contig	NODE_661_length_20169_cov_4.503636:8823..10005 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	40559.M7TWK5
PFAMs	APH
Max annot lvl	4751\|Fungi
Evalue	5.85e-104
EggNOG OGs	29RP9@1\|root,2RXBQ@2759\|Eukaryota,39YH9@33154\|Opisthokonta,3NYJZ@4751\|Fungi,3QRNT@4890\|Ascomycota,2102V@147548\|Leotiomycetes
Description	Phosphotransferase enzyme family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud736	Gcaud736	Gracilaria caudata M_176_S67 male	gene	NODE_661_length_20169_cov_4.503636 8823..10005 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud736.t1	Gcaud736.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_661_length_20169_cov_4.503636 8823..10005 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud736.t1.start1	Gcaud736.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_661_length_20169_cov_4.503636 8823..8825 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud736.t1.CDS1	Gcaud736.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_661_length_20169_cov_4.503636 8823..9357 +
Gcaud736.t1.CDS2	Gcaud736.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_661_length_20169_cov_4.503636 9419..10005 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud736.t1.exon1	Gcaud736.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_661_length_20169_cov_4.503636 8823..9357 +
Gcaud736.t1.exon2	Gcaud736.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_661_length_20169_cov_4.503636 9419..10005 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud736.t1.intron1	Gcaud736.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_661_length_20169_cov_4.503636 9358..9418 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud736.t1.stop1	Gcaud736.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_661_length_20169_cov_4.503636 10003..10005 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_661_length_20169_cov_4.503636:8823..10005+
coding sequence from alignment at NODE_661_length_20169_cov_4.503636:8823..10005+

mRNA sequence

>Gcaud736.t1 ID=Gcaud736.t1|Name=Gcaud736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=374bp
MDIIKHLASSALAETQLYDVEFFDEGAFNKLYLIRSSKGEFIMRVSLPVD
PRFKTLSEVATLEFVRHNTDVPIPKVLAYDASADNELGFEWIIMERMPGK
SLVSQWRTMPFSKKEVLVKRIACFSASIFSHKFNHVGNIFHSESRDDPSI
TLPTDFVVDRIVSMEVFWGDHLTHNVARERILKNCNDEDELDDAKRIAQN
IHKLVALVPMVFPSSPEDSPESTALLHDDISQANVLVNEDGDLSAIVDWE
CVSALALWKVCQLPVFLEGRERNEKPVKDDYAHDENGEPNELFWEHLLEY
EQTQLRGIFLGEMKRIEPEWIKTYCSSSNERKADTELAIQQCDNELCIKL
LGEWLDTVSQGDDVVSLKKNLVT*

spliced messenger RNA

>Gcaud736.t1 ID=Gcaud736.t1|Name=Gcaud736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at NODE_661_length_20169_cov_4.503636:8823..10005+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTATCAAACACTTAGCAAGCAGCGCTCTTGCTGAAACACAACT
CTATGATGTGGAGTTCTTTGACGAGGGAGCCTTCAACAAGTTGTATTTGA
TTCGATCCTCAAAAGGAGAGTTCATTATGCGCGTGTCGCTCCCCGTAGAC
CCGCGTTTCAAGACACTGAGCGAGGTAGCTACTCTTGAGTTCGTGCGCCA
CAACACTGATGTGCCGATTCCTAAGGTACTTGCATATGACGCCTCTGCCG
ACAACGAACTGGGCTTCGAATGGATTATCATGGAACGCATGCCGGGAAAA
TCGCTTGTAAGTCAGTGGAGAACGATGCCATTCTCGAAGAAAGAGGTTTT
GGTGAAACGTATAGCATGTTTTTCGGCTTCGATCTTCAGCCACAAGTTTA
ATCATGTTGGCAATATTTTTCACTCTGAGAGCCGTGATGATCCCTCTATT
ACATTGCCAACAGATTTTGTTGTCGACAGGATTGTTTCGATGGAGGTTTT
CTGGGGTGATCACCTAACTCACAACGTGGCTAGAGAGCGAATTTTGAAGA
ACTGCAATGATGAAGATGAGCTTGACGATGCAAAGAGAATAGCTCAGAAC
ATACACAAGCTCGTCGCGCTTGTGCCGATGGTATTTCCTTCAAGCCCGGA
GGATAGCCCCGAATCCACTGCTCTCCTGCATGATGACATATCACAAGCCA
ATGTTCTGGTGAATGAGGATGGAGATCTTTCGGCTATTGTGGACTGGGAA
TGTGTGTCAGCACTGGCGTTGTGGAAGGTTTGCCAGTTGCCTGTGTTCCT
CGAAGGCAGAGAGCGAAATGAGAAGCCTGTGAAAGACGATTACGCCCATG
ACGAAAACGGAGAACCCAACGAACTGTTCTGGGAGCACCTTTTGGAGTAT
GAACAGACTCAACTGCGTGGTATCTTTCTGGGCGAAATGAAACGCATCGA
GCCGGAATGGATTAAGACATATTGCTCTAGCTCTAATGAGAGAAAGGCAG
ATACAGAACTGGCCATACAACAGTGCGACAACGAACTTTGCATCAAACTA
CTTGGTGAATGGTTGGACACAGTTTCACAAGGTGATGATGTTGTCAGCCT
GAAGAAAAATCTTGTGACGTGA

protein sequence of Gcaud736.t1

>Gcaud736.t1 ID=Gcaud736.t1|Name=Gcaud736.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=374bp
MDIIKHLASSALAETQLYDVEFFDEGAFNKLYLIRSSKGEFIMRVSLPVD
PRFKTLSEVATLEFVRHNTDVPIPKVLAYDASADNELGFEWIIMERMPGK
SLVSQWRTMPFSKKEVLVKRIACFSASIFSHKFNHVGNIFHSESRDDPSI
TLPTDFVVDRIVSMEVFWGDHLTHNVARERILKNCNDEDELDDAKRIAQN
IHKLVALVPMVFPSSPEDSPESTALLHDDISQANVLVNEDGDLSAIVDWE
CVSALALWKVCQLPVFLEGRERNEKPVKDDYAHDENGEPNELFWEHLLEY
EQTQLRGIFLGEMKRIEPEWIKTYCSSSNERKADTELAIQQCDNELCIKL
LGEWLDTVSQGDDVVSLKKNLVT*

mRNA from alignment at NODE_661_length_20169_cov_4.503636:8823..10005+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud736.t1 ID=Gcaud736.t1|Name=Gcaud736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1183bp|location=Sequence derived from alignment at NODE_661_length_20169_cov_4.503636:8823..10005+ (Gracilaria caudata M_176_S67 male)
ATGGACATTATCAAACACTTAGCAAGCAGCGCTCTTGCTGAAACACAACT
CTATGATGTGGAGTTCTTTGACGAGGGAGCCTTCAACAAGTTGTATTTGA
TTCGATCCTCAAAAGGAGAGTTCATTATGCGCGTGTCGCTCCCCGTAGAC
CCGCGTTTCAAGACACTGAGCGAGGTAGCTACTCTTGAGTTCGTGCGCCA
CAACACTGATGTGCCGATTCCTAAGGTACTTGCATATGACGCCTCTGCCG
ACAACGAACTGGGCTTCGAATGGATTATCATGGAACGCATGCCGGGAAAA
TCGCTTGTAAGTCAGTGGAGAACGATGCCATTCTCGAAGAAAGAGGTTTT
GGTGAAACGTATAGCATGTTTTTCGGCTTCGATCTTCAGCCACAAGTTTA
ATCATGTTGGCAATATTTTTCACTCTGAGAGCCGTGATGATCCCTCTATT
ACATTGCCAACAGATTTTGTTGTCGACAGGATTGTTTCGATGGAGGTTTT
CTGGGGTGATCACCTAACTCACAACGTGGCTAGAGGTCCGTTCAAGTCAA
GTCAAGAATGGCTTTTCGCACGTCTTCTTTTCCATCAAAAGACTAGAGCG
AATTTTGAAGAACTGCAATGATGAAGATGAGCTTGACGATGCAAAGAGAA
TAGCTCAGAACATACACAAGCTCGTCGCGCTTGTGCCGATGGTATTTCCT
TCAAGCCCGGAGGATAGCCCCGAATCCACTGCTCTCCTGCATGATGACAT
ATCACAAGCCAATGTTCTGGTGAATGAGGATGGAGATCTTTCGGCTATTG
TGGACTGGGAATGTGTGTCAGCACTGGCGTTGTGGAAGGTTTGCCAGTTG
CCTGTGTTCCTCGAAGGCAGAGAGCGAAATGAGAAGCCTGTGAAAGACGA
TTACGCCCATGACGAAAACGGAGAACCCAACGAACTGTTCTGGGAGCACC
TTTTGGAGTATGAACAGACTCAACTGCGTGGTATCTTTCTGGGCGAAATG
AAACGCATCGAGCCGGAATGGATTAAGACATATTGCTCTAGCTCTAATGA
GAGAAAGGCAGATACAGAACTGGCCATACAACAGTGCGACAACGAACTTT
GCATCAAACTACTTGGTGAATGGTTGGACACAGTTTCACAAGGTGATGAT
GTTGTCAGCCTGAAGAAAAATCTTGTGACGTGA

Coding sequence (CDS) from alignment at NODE_661_length_20169_cov_4.503636:8823..10005+

>Gcaud736.t1 ID=Gcaud736.t1|Name=Gcaud736.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1122bp|location=Sequence derived from alignment at NODE_661_length_20169_cov_4.503636:8823..10005+ (Gracilaria caudata M_176_S67 male)
ATGGACATTATCAAACACTTAGCAAGCAGCGCTCTTGCTGAAACACAACT
CTATGATGTGGAGTTCTTTGACGAGGGAGCCTTCAACAAGTTGTATTTGA
TTCGATCCTCAAAAGGAGAGTTCATTATGCGCGTGTCGCTCCCCGTAGAC
CCGCGTTTCAAGACACTGAGCGAGGTAGCTACTCTTGAGTTCGTGCGCCA
CAACACTGATGTGCCGATTCCTAAGGTACTTGCATATGACGCCTCTGCCG
ACAACGAACTGGGCTTCGAATGGATTATCATGGAACGCATGCCGGGAAAA
TCGCTTGTAAGTCAGTGGAGAACGATGCCATTCTCGAAGAAAGAGGTTTT
GGTGAAACGTATAGCATGTTTTTCGGCTTCGATCTTCAGCCACAAGTTTA
ATCATGTTGGCAATATTTTTCACTCTGAGAGCCGTGATGATCCCTCTATT
ACATTGCCAACAGATTTTGTTGTCGACAGGATTGTTTCGATGGAGGTTTT
CTGGGGTGATCACCTAACTCACAACGTGGCTAGAGAGCGAATTTTGAAGA
ACTGCAATGATGAAGATGAGCTTGACGATGCAAAGAGAATAGCTCAGAAC
ATACACAAGCTCGTCGCGCTTGTGCCGATGGTATTTCCTTCAAGCCCGGA
GGATAGCCCCGAATCCACTGCTCTCCTGCATGATGACATATCACAAGCCA
ATGTTCTGGTGAATGAGGATGGAGATCTTTCGGCTATTGTGGACTGGGAA
TGTGTGTCAGCACTGGCGTTGTGGAAGGTTTGCCAGTTGCCTGTGTTCCT
CGAAGGCAGAGAGCGAAATGAGAAGCCTGTGAAAGACGATTACGCCCATG
ACGAAAACGGAGAACCCAACGAACTGTTCTGGGAGCACCTTTTGGAGTAT
GAACAGACTCAACTGCGTGGTATCTTTCTGGGCGAAATGAAACGCATCGA
GCCGGAATGGATTAAGACATATTGCTCTAGCTCTAATGAGAGAAAGGCAG
ATACAGAACTGGCCATACAACAGTGCGACAACGAACTTTGCATCAAACTA
CTTGGTGAATGGTTGGACACAGTTTCACAAGGTGATGATGTTGTCAGCCT
GAAGAAAAATCTTGTGACGTGA