Gcaud7342.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7342.t1
Unique Name	Gcaud7342.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	397

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1084_length_14023_cov_4.104579	contig	NODE_1084_length_14023_cov_4.104579:2561..3751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703761.1
PFAMs	MMR_HSR1,YchF-GTPase_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19788
Evalue	2.04e-186
EggNOG OGs	COG0012@1\|root,KOG1491@2759\|Eukaryota
Description	GTP binding
COG category	J
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7342	Gcaud7342	Gracilaria caudata M_176_S67 male	gene	NODE_1084_length_14023_cov_4.104579 2561..3751 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7342.t1.start1	Gcaud7342.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1084_length_14023_cov_4.104579 2561..2563 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7342.t1.CDS1	Gcaud7342.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1084_length_14023_cov_4.104579 2561..3751 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7342.t1.exon1	Gcaud7342.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1084_length_14023_cov_4.104579 2561..3751 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7342.t1.stop1	Gcaud7342.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1084_length_14023_cov_4.104579 3749..3751 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7342.t1	Gcaud7342.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1084_length_14023_cov_4.104579 2561..3751 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1084_length_14023_cov_4.104579:2561..3751+
coding sequence from alignment at NODE_1084_length_14023_cov_4.104579:2561..3751+

mRNA sequence

>Gcaud7342.t1 ID=Gcaud7342.t1|Name=Gcaud7342.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=397bp
MAPKKKTDGAPAPKKFLGRFSHNLKMGIVGLPNVGKSTFFNTLTKKSVPA
ENFPFCTIEPNEARVTVPDDRFDWLCDHWKPASSVSAYLEVWDIAGLVKN
ANQGEGLGNSFLSNIQAVDGIFHMCRAFSDPDVTHVEGEVDPIRDLNIIA
DELRLKDLSRLEKLLEDAEQKVARAGNKCPKDLKETRDALAKAKKCLEED
KLPLRVIDWTNAEVEVLNEHMFLTAKPAIYLVNVSEKDYIRKKNKWLGRI
KEWVDKQSGEMIVPFSAAFEEKLVDMEMNAGKEAMDEYLKEVGVGSALDK
IVKAGYKALRLIYFFTGGQDEVKCWTIRHGTLAPQAAGTIHTDFEKGFVC
AEVMKYHDFKELGSESAVKARGKLKQNGKLYQVEDGDIIFFKFGRT*

spliced messenger RNA

>Gcaud7342.t1 ID=Gcaud7342.t1|Name=Gcaud7342.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:2561..3751+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGAAGAAGAAAACAGATGGCGCTCCAGCTCCCAAGAAGTTCCT
AGGCCGATTCTCCCACAACCTCAAGATGGGCATTGTGGGACTTCCCAACG
TCGGCAAGAGTACTTTCTTCAACACGCTCACAAAGAAGAGCGTTCCAGCT
GAGAATTTTCCGTTTTGCACCATCGAACCGAACGAAGCGCGTGTGACAGT
ACCAGACGATCGTTTCGACTGGCTTTGCGATCACTGGAAGCCCGCTTCAA
GCGTCTCTGCCTACCTTGAGGTGTGGGACATAGCTGGCTTGGTGAAGAAC
GCCAATCAGGGCGAAGGCCTTGGGAACTCGTTTCTGTCAAACATTCAAGC
TGTGGATGGCATCTTTCACATGTGCCGAGCGTTTTCCGATCCGGATGTCA
CCCATGTGGAGGGCGAGGTGGACCCCATCAGAGACTTGAATATTATTGCT
GATGAGCTGAGACTCAAGGACTTGAGCCGACTGGAAAAGCTTCTCGAGGA
TGCTGAACAAAAAGTGGCCCGAGCAGGAAATAAATGTCCAAAGGATCTGA
AGGAAACTCGCGATGCTCTTGCCAAGGCAAAGAAGTGTTTGGAGGAAGAC
AAACTTCCGCTTCGAGTCATAGATTGGACTAATGCGGAAGTGGAAGTACT
CAATGAGCACATGTTCCTCACGGCCAAGCCTGCTATCTATCTAGTGAACG
TTAGTGAAAAGGATTACATTCGAAAGAAGAACAAGTGGCTTGGACGCATT
AAGGAATGGGTGGATAAACAATCAGGCGAAATGATTGTTCCGTTTTCTGC
TGCTTTTGAAGAAAAATTGGTCGACATGGAAATGAATGCCGGAAAGGAAG
CAATGGATGAGTATCTGAAGGAAGTGGGAGTAGGGAGTGCGTTGGACAAG
ATTGTAAAAGCAGGATACAAGGCATTGAGATTGATCTACTTTTTCACAGG
TGGACAGGATGAGGTGAAATGTTGGACCATTCGGCATGGCACTCTTGCAC
CACAAGCGGCGGGTACAATTCATACAGATTTCGAGAAGGGCTTTGTGTGT
GCCGAGGTGATGAAGTACCATGACTTCAAGGAACTGGGTTCAGAATCTGC
TGTCAAGGCACGCGGTAAATTGAAGCAGAACGGAAAATTATATCAAGTGG
AAGATGGTGACATTATATTCTTTAAGTTTGGGCGAACGTGA

protein sequence of Gcaud7342.t1

>Gcaud7342.t1 ID=Gcaud7342.t1|Name=Gcaud7342.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=397bp
MAPKKKTDGAPAPKKFLGRFSHNLKMGIVGLPNVGKSTFFNTLTKKSVPA
ENFPFCTIEPNEARVTVPDDRFDWLCDHWKPASSVSAYLEVWDIAGLVKN
ANQGEGLGNSFLSNIQAVDGIFHMCRAFSDPDVTHVEGEVDPIRDLNIIA
DELRLKDLSRLEKLLEDAEQKVARAGNKCPKDLKETRDALAKAKKCLEED
KLPLRVIDWTNAEVEVLNEHMFLTAKPAIYLVNVSEKDYIRKKNKWLGRI
KEWVDKQSGEMIVPFSAAFEEKLVDMEMNAGKEAMDEYLKEVGVGSALDK
IVKAGYKALRLIYFFTGGQDEVKCWTIRHGTLAPQAAGTIHTDFEKGFVC
AEVMKYHDFKELGSESAVKARGKLKQNGKLYQVEDGDIIFFKFGRT*

mRNA from alignment at NODE_1084_length_14023_cov_4.104579:2561..3751+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7342.t1 ID=Gcaud7342.t1|Name=Gcaud7342.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:2561..3751+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCGAAGAAGAAAACAGATGGCGCTCCAGCTCCCAAGAAGTTCCT
AGGCCGATTCTCCCACAACCTCAAGATGGGCATTGTGGGACTTCCCAACG
TCGGCAAGAGTACTTTCTTCAACACGCTCACAAAGAAGAGCGTTCCAGCT
GAGAATTTTCCGTTTTGCACCATCGAACCGAACGAAGCGCGTGTGACAGT
ACCAGACGATCGTTTCGACTGGCTTTGCGATCACTGGAAGCCCGCTTCAA
GCGTCTCTGCCTACCTTGAGGTGTGGGACATAGCTGGCTTGGTGAAGAAC
GCCAATCAGGGCGAAGGCCTTGGGAACTCGTTTCTGTCAAACATTCAAGC
TGTGGATGGCATCTTTCACATGTGCCGAGCGTTTTCCGATCCGGATGTCA
CCCATGTGGAGGGCGAGGTGGACCCCATCAGAGACTTGAATATTATTGCT
GATGAGCTGAGACTCAAGGACTTGAGCCGACTGGAAAAGCTTCTCGAGGA
TGCTGAACAAAAAGTGGCCCGAGCAGGAAATAAATGTCCAAAGGATCTGA
AGGAAACTCGCGATGCTCTTGCCAAGGCAAAGAAGTGTTTGGAGGAAGAC
AAACTTCCGCTTCGAGTCATAGATTGGACTAATGCGGAAGTGGAAGTACT
CAATGAGCACATGTTCCTCACGGCCAAGCCTGCTATCTATCTAGTGAACG
TTAGTGAAAAGGATTACATTCGAAAGAAGAACAAGTGGCTTGGACGCATT
AAGGAATGGGTGGATAAACAATCAGGCGAAATGATTGTTCCGTTTTCTGC
TGCTTTTGAAGAAAAATTGGTCGACATGGAAATGAATGCCGGAAAGGAAG
CAATGGATGAGTATCTGAAGGAAGTGGGAGTAGGGAGTGCGTTGGACAAG
ATTGTAAAAGCAGGATACAAGGCATTGAGATTGATCTACTTTTTCACAGG
TGGACAGGATGAGGTGAAATGTTGGACCATTCGGCATGGCACTCTTGCAC
CACAAGCGGCGGGTACAATTCATACAGATTTCGAGAAGGGCTTTGTGTGT
GCCGAGGTGATGAAGTACCATGACTTCAAGGAACTGGGTTCAGAATCTGC
TGTCAAGGCACGCGGTAAATTGAAGCAGAACGGAAAATTATATCAAGTGG
AAGATGGTGACATTATATTCTTTAAGTTTGGGCGAACGTGA

Coding sequence (CDS) from alignment at NODE_1084_length_14023_cov_4.104579:2561..3751+

>Gcaud7342.t1 ID=Gcaud7342.t1|Name=Gcaud7342.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1191bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:2561..3751+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCGAAGAAGAAAACAGATGGCGCTCCAGCTCCCAAGAAGTTCCT
AGGCCGATTCTCCCACAACCTCAAGATGGGCATTGTGGGACTTCCCAACG
TCGGCAAGAGTACTTTCTTCAACACGCTCACAAAGAAGAGCGTTCCAGCT
GAGAATTTTCCGTTTTGCACCATCGAACCGAACGAAGCGCGTGTGACAGT
ACCAGACGATCGTTTCGACTGGCTTTGCGATCACTGGAAGCCCGCTTCAA
GCGTCTCTGCCTACCTTGAGGTGTGGGACATAGCTGGCTTGGTGAAGAAC
GCCAATCAGGGCGAAGGCCTTGGGAACTCGTTTCTGTCAAACATTCAAGC
TGTGGATGGCATCTTTCACATGTGCCGAGCGTTTTCCGATCCGGATGTCA
CCCATGTGGAGGGCGAGGTGGACCCCATCAGAGACTTGAATATTATTGCT
GATGAGCTGAGACTCAAGGACTTGAGCCGACTGGAAAAGCTTCTCGAGGA
TGCTGAACAAAAAGTGGCCCGAGCAGGAAATAAATGTCCAAAGGATCTGA
AGGAAACTCGCGATGCTCTTGCCAAGGCAAAGAAGTGTTTGGAGGAAGAC
AAACTTCCGCTTCGAGTCATAGATTGGACTAATGCGGAAGTGGAAGTACT
CAATGAGCACATGTTCCTCACGGCCAAGCCTGCTATCTATCTAGTGAACG
TTAGTGAAAAGGATTACATTCGAAAGAAGAACAAGTGGCTTGGACGCATT
AAGGAATGGGTGGATAAACAATCAGGCGAAATGATTGTTCCGTTTTCTGC
TGCTTTTGAAGAAAAATTGGTCGACATGGAAATGAATGCCGGAAAGGAAG
CAATGGATGAGTATCTGAAGGAAGTGGGAGTAGGGAGTGCGTTGGACAAG
ATTGTAAAAGCAGGATACAAGGCATTGAGATTGATCTACTTTTTCACAGG
TGGACAGGATGAGGTGAAATGTTGGACCATTCGGCATGGCACTCTTGCAC
CACAAGCGGCGGGTACAATTCATACAGATTTCGAGAAGGGCTTTGTGTGT
GCCGAGGTGATGAAGTACCATGACTTCAAGGAACTGGGTTCAGAATCTGC
TGTCAAGGCACGCGGTAAATTGAAGCAGAACGGAAAATTATATCAAGTGG
AAGATGGTGACATTATATTCTTTAAGTTTGGGCGAACGTGA