Gcaud7341.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7341.t1
Unique Name	Gcaud7341.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1084_length_14023_cov_4.104579	contig	NODE_1084_length_14023_cov_4.104579:52..1344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4577.GRMZM2G350711_P01
PFAMs	BACK,BTB
Max annot lvl	35493\|Streptophyta
Evalue	0.000387
EggNOG OGs	28KQJ@1\|root,2QT6M@2759\|Eukaryota,37M5B@33090\|Viridiplantae,3GEF9@35493\|Streptophyta,3KYJ0@4447\|Liliopsida,3IGR7@38820\|Poales
Description	domain-containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7341	Gcaud7341	Gracilaria caudata M_176_S67 male	gene	NODE_1084_length_14023_cov_4.104579 52..1344 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7341.t1	Gcaud7341.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1084_length_14023_cov_4.104579 52..1344 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7341.t1.start1	Gcaud7341.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1084_length_14023_cov_4.104579 52..54 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7341.t1.CDS1	Gcaud7341.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1084_length_14023_cov_4.104579 52..1119 +
Gcaud7341.t1.CDS2	Gcaud7341.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1084_length_14023_cov_4.104579 1261..1344 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7341.t1.exon1	Gcaud7341.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1084_length_14023_cov_4.104579 52..1119 +
Gcaud7341.t1.exon2	Gcaud7341.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1084_length_14023_cov_4.104579 1261..1344 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7341.t1.intron1	Gcaud7341.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1084_length_14023_cov_4.104579 1120..1260 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7341.t1.stop1	Gcaud7341.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1084_length_14023_cov_4.104579 1342..1344 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1084_length_14023_cov_4.104579:52..1344+
coding sequence from alignment at NODE_1084_length_14023_cov_4.104579:52..1344+

mRNA sequence

>Gcaud7341.t1 ID=Gcaud7341.t1|Name=Gcaud7341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp
MAFAQTLLRKMRSDSISDKHYYDIFFVVQSRHRDGTPSETRLGAHRVVLS
ALSDTFESCCNAVPNQPHSEILVTDCSAAAVREALQIVYGGEMTDSQNSI
VLALEVWHFGVLFNVEYLIQLARSTCLEKLSTENCLRILDFAVSVDDQNV
VEQLQNYTADNANFAHVIASPHFNRLSFDVIAALPRPGKGECAWPEILTF
EKVWFDALIKWLENALNEAAEKQPKSKVDTVPLIRKVLDLVDFTRMKTHE
LREVSTNAIAVQCASFSPGLVSVLLTRSEQLESTILERNIDLDVIGQKYQ
QALCDADEADRKSRSAAEKLEKVQTAKLSLERRFDDVRRKKSPNSRAPPA
NAARRKPQSVLRTSSTLFQKFRSRINSKGDQPT*

spliced messenger RNA

>Gcaud7341.t1 ID=Gcaud7341.t1|Name=Gcaud7341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:52..1344+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGCACAGACGCTTCTGCGCAAGATGCGCTCCGACTCCATCTC
CGACAAGCACTACTACGACATCTTCTTCGTGGTGCAGTCGCGCCACCGCG
ACGGCACCCCCTCCGAGACGCGCCTCGGCGCGCACCGCGTCGTGCTCTCC
GCGCTCTCCGACACCTTCGAGTCGTGCTGCAACGCCGTGCCCAACCAGCC
GCACTCCGAGATCCTCGTCACCGACTGCAGCGCCGCCGCCGTGCGCGAGG
CGCTGCAGATCGTGTACGGCGGTGAGATGACCGACTCGCAAAACTCCATC
GTACTCGCGCTGGAAGTGTGGCATTTCGGCGTGCTTTTCAACGTCGAATA
CCTCATTCAACTCGCGCGTTCCACCTGTCTGGAGAAGCTTTCCACCGAAA
ATTGTCTGCGCATTCTGGATTTTGCGGTCAGCGTGGACGACCAAAACGTC
GTGGAGCAGCTGCAGAATTACACCGCCGACAACGCCAATTTCGCGCATGT
GATTGCGTCGCCGCACTTCAATCGGCTCTCGTTCGACGTCATCGCCGCGC
TGCCGCGCCCGGGAAAGGGCGAGTGCGCGTGGCCCGAGATCCTCACCTTT
GAAAAGGTTTGGTTTGACGCGCTCATCAAGTGGCTTGAAAACGCGCTCAA
CGAAGCGGCGGAGAAACAGCCCAAATCCAAAGTGGACACTGTACCGCTGA
TCCGCAAGGTGCTCGACCTCGTCGACTTCACGCGCATGAAGACTCACGAG
TTGCGCGAAGTGTCCACCAACGCCATCGCCGTGCAATGCGCGTCGTTCTC
GCCGGGGCTCGTATCCGTGTTGCTCACGCGCTCGGAGCAGTTGGAGAGCA
CAATTTTGGAGCGTAACATCGACCTGGATGTGATCGGGCAGAAGTACCAA
CAGGCGCTGTGCGACGCCGACGAGGCCGATAGGAAATCGCGTAGCGCCGC
CGAGAAGCTGGAGAAGGTGCAGACGGCCAAGCTGTCGCTCGAAAGGCGCT
TCGACGATGTGCGCAGGAAGAAGTCGCCGAACAGTCGCGCGCCGCCCGCC
AACGCCGCGCGCCGAAAGCCGCAGTCCGTGTTGCGCACCAGCTCCACGCT
ATTCCAAAAGTTTCGGAGCAGGATTAATTCGAAAGGGGATCAGCCCACGT
AA

protein sequence of Gcaud7341.t1

>Gcaud7341.t1 ID=Gcaud7341.t1|Name=Gcaud7341.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=384bp
MAFAQTLLRKMRSDSISDKHYYDIFFVVQSRHRDGTPSETRLGAHRVVLS
ALSDTFESCCNAVPNQPHSEILVTDCSAAAVREALQIVYGGEMTDSQNSI
VLALEVWHFGVLFNVEYLIQLARSTCLEKLSTENCLRILDFAVSVDDQNV
VEQLQNYTADNANFAHVIASPHFNRLSFDVIAALPRPGKGECAWPEILTF
EKVWFDALIKWLENALNEAAEKQPKSKVDTVPLIRKVLDLVDFTRMKTHE
LREVSTNAIAVQCASFSPGLVSVLLTRSEQLESTILERNIDLDVIGQKYQ
QALCDADEADRKSRSAAEKLEKVQTAKLSLERRFDDVRRKKSPNSRAPPA
NAARRKPQSVLRTSSTLFQKFRSRINSKGDQPT*

mRNA from alignment at NODE_1084_length_14023_cov_4.104579:52..1344+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7341.t1 ID=Gcaud7341.t1|Name=Gcaud7341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:52..1344+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCGCACAGACGCTTCTGCGCAAGATGCGCTCCGACTCCATCTC
CGACAAGCACTACTACGACATCTTCTTCGTGGTGCAGTCGCGCCACCGCG
ACGGCACCCCCTCCGAGACGCGCCTCGGCGCGCACCGCGTCGTGCTCTCC
GCGCTCTCCGACACCTTCGAGTCGTGCTGCAACGCCGTGCCCAACCAGCC
GCACTCCGAGATCCTCGTCACCGACTGCAGCGCCGCCGCCGTGCGCGAGG
CGCTGCAGATCGTGTACGGCGGTGAGATGACCGACTCGCAAAACTCCATC
GTACTCGCGCTGGAAGTGTGGCATTTCGGCGTGCTTTTCAACGTCGAATA
CCTCATTCAACTCGCGCGTTCCACCTGTCTGGAGAAGCTTTCCACCGAAA
ATTGTCTGCGCATTCTGGATTTTGCGGTCAGCGTGGACGACCAAAACGTC
GTGGAGCAGCTGCAGAATTACACCGCCGACAACGCCAATTTCGCGCATGT
GATTGCGTCGCCGCACTTCAATCGGCTCTCGTTCGACGTCATCGCCGCGC
TGCCGCGCCCGGGAAAGGGCGAGTGCGCGTGGCCCGAGATCCTCACCTTT
GAAAAGGTTTGGTTTGACGCGCTCATCAAGTGGCTTGAAAACGCGCTCAA
CGAAGCGGCGGAGAAACAGCCCAAATCCAAAGTGGACACTGTACCGCTGA
TCCGCAAGGTGCTCGACCTCGTCGACTTCACGCGCATGAAGACTCACGAG
TTGCGCGAAGTGTCCACCAACGCCATCGCCGTGCAATGCGCGTCGTTCTC
GCCGGGGCTCGTATCCGTGTTGCTCACGCGCTCGGAGCAGTTGGAGAGCA
CAATTTTGGAGCGTAACATCGACCTGGATGTGATCGGGCAGAAGTACCAA
CAGGCGCTGTGCGACGCCGACGAGGCCGATAGGAAATCGCGTAGCGCCGC
CGAGAAGCTGGAGAAGGTGCAGACGGCCAAGCTGTCGCTCGAAAGGCGCT
TCGACGATGTGCGCAGGAAGAAGTCGCCGAACAGTCGCGCGCCGCCCGCC
AACGCCGCGCGCCGAAAGGTAAGTGGCACTTCCACCATCATTTGATCGCG
CGCGCGCGCGATCAAATGATTAAAACAttttctctttttttcttttcttt
tcttttcttttctCACATATTTTGTTTGTTGTTCGTGCGTGTGCCGAAAC
ACCGCATAGCCGCAGTCCGTGTTGCGCACCAGCTCCACGCTATTCCAAAA
GTTTCGGAGCAGGATTAATTCGAAAGGGGATCAGCCCACGTAA

Coding sequence (CDS) from alignment at NODE_1084_length_14023_cov_4.104579:52..1344+

>Gcaud7341.t1 ID=Gcaud7341.t1|Name=Gcaud7341.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1152bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:52..1344+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCGCACAGACGCTTCTGCGCAAGATGCGCTCCGACTCCATCTC
CGACAAGCACTACTACGACATCTTCTTCGTGGTGCAGTCGCGCCACCGCG
ACGGCACCCCCTCCGAGACGCGCCTCGGCGCGCACCGCGTCGTGCTCTCC
GCGCTCTCCGACACCTTCGAGTCGTGCTGCAACGCCGTGCCCAACCAGCC
GCACTCCGAGATCCTCGTCACCGACTGCAGCGCCGCCGCCGTGCGCGAGG
CGCTGCAGATCGTGTACGGCGGTGAGATGACCGACTCGCAAAACTCCATC
GTACTCGCGCTGGAAGTGTGGCATTTCGGCGTGCTTTTCAACGTCGAATA
CCTCATTCAACTCGCGCGTTCCACCTGTCTGGAGAAGCTTTCCACCGAAA
ATTGTCTGCGCATTCTGGATTTTGCGGTCAGCGTGGACGACCAAAACGTC
GTGGAGCAGCTGCAGAATTACACCGCCGACAACGCCAATTTCGCGCATGT
GATTGCGTCGCCGCACTTCAATCGGCTCTCGTTCGACGTCATCGCCGCGC
TGCCGCGCCCGGGAAAGGGCGAGTGCGCGTGGCCCGAGATCCTCACCTTT
GAAAAGGTTTGGTTTGACGCGCTCATCAAGTGGCTTGAAAACGCGCTCAA
CGAAGCGGCGGAGAAACAGCCCAAATCCAAAGTGGACACTGTACCGCTGA
TCCGCAAGGTGCTCGACCTCGTCGACTTCACGCGCATGAAGACTCACGAG
TTGCGCGAAGTGTCCACCAACGCCATCGCCGTGCAATGCGCGTCGTTCTC
GCCGGGGCTCGTATCCGTGTTGCTCACGCGCTCGGAGCAGTTGGAGAGCA
CAATTTTGGAGCGTAACATCGACCTGGATGTGATCGGGCAGAAGTACCAA
CAGGCGCTGTGCGACGCCGACGAGGCCGATAGGAAATCGCGTAGCGCCGC
CGAGAAGCTGGAGAAGGTGCAGACGGCCAAGCTGTCGCTCGAAAGGCGCT
TCGACGATGTGCGCAGGAAGAAGTCGCCGAACAGTCGCGCGCCGCCCGCC
AACGCCGCGCGCCGAAAGCCGCAGTCCGTGTTGCGCACCAGCTCCACGCT
ATTCCAAAAGTTTCGGAGCAGGATTAATTCGAAAGGGGATCAGCCCACGT
AA