Gcaud734.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud734.t1
Unique Name	Gcaud734.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2502_length_5456_cov_5.107735	contig	NODE_2502_length_5456_cov_5.107735:607..1575 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud734	Gcaud734	Gracilaria caudata M_176_S67 male	gene	NODE_2502_length_5456_cov_5.107735 607..1575 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud734.t1.start1	Gcaud734.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2502_length_5456_cov_5.107735 607..609 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud734.t1.CDS1	Gcaud734.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2502_length_5456_cov_5.107735 607..1575 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud734.t1.exon1	Gcaud734.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2502_length_5456_cov_5.107735 607..1575 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud734.t1.stop1	Gcaud734.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2502_length_5456_cov_5.107735 1573..1575 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud734.t1	Gcaud734.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2502_length_5456_cov_5.107735 607..1575 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2502_length_5456_cov_5.107735:607..1575+
coding sequence from alignment at NODE_2502_length_5456_cov_5.107735:607..1575+

mRNA sequence

>Gcaud734.t1 ID=Gcaud734.t1|Name=Gcaud734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MLLHSDAEAKPLDVLHEGNQQAWNTLISSFMGSDWTESSNARTLNDAVIL
ELELLSRMLTYSEIPGRSPDRFEFFPSCVDFHFEVIGNSTNSFADRIYKS
VPAAQTVKPNTNSWDISDDRRRILLHSHYSLESVSLHAKFESIGTHQVWK
VGLRFRFPSWTYGKWPEYPNEGLVFVISVYDENDSLTFKTEEFNTFHFTY
FSKAKPWTGERNMKFPLEIRRLLKEDNTGDSLQIAPRGAEDHSSWRIFEC
SNIPTGGSQNKICLSLECIPNRYGWTKKHEPVEIDSFYIAPQTAYNEMNP
SNTRGQHSCHTISAMKKVVSEV*

spliced messenger RNA

>Gcaud734.t1 ID=Gcaud734.t1|Name=Gcaud734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_2502_length_5456_cov_5.107735:607..1575+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTACATTCAGATGCTGAAGCTAAACCGTTGGATGTGCTTCATGA
AGGGAACCAGCAAGCGTGGAATACTCTGATAAGCAGTTTCATGGGATCAG
ACTGGACAGAAAGCTCTAATGCGCGGACATTGAACGATGCGGTAATCTTG
GAACTGGAGTTACTCTCCAGGATGCTTACATATTCAGAGATACCAGGAAG
ATCTCCAGACCGGTTCGAATTTTTTCCATCATGTGTGGATTTTCATTTCG
AGGTCATTGGCAATAGCACAAATTCTTTTGCTGACAGGATTTATAAGTCT
GTTCCAGCGGCACAGACCGTGAAACCAAACACCAACTCATGGGACATAAG
CGATGATCGAAGAAGGATTTTGTTGCATTCTCACTATTCACTGGAATCTG
TTTCATTGCATGCCAAATTTGAGTCCATTGGAACACATCAAGTATGGAAA
GTGGGACTTCGCTTTCGATTTCCATCATGGACGTATGGAAAGTGGCCGGA
GTACCCAAATGAGGGTTTGGTTTTTGTCATATCCGTTTATGATGAAAATG
ATTCTCTTACGTTTAAAACGGAAGAATTCAACACGTTTCACTTCACATAC
TTTTCGAAGGCCAAACCTTGGACGGGAGAAAGAAATATGAAGTTCCCTCT
TGAGATTAGACGCTTGCTCAAGGAAGATAATACTGGCGATTCACTTCAAA
TTGCTCCACGAGGTGCAGAAGATCATTCTTCCTGGCGTATTTTTGAGTGC
TCAAACATTCCAACAGGTGGGTCCCAAAACAAGATATGTCTGTCTTTGGA
ATGCATTCCAAACAGATATGGGTGGACTAAAAAACATGAACCTGTCGAAA
TAGATTCGTTCTATATTGCCCCACAAACCGCTTACAACGAAATGAATCCA
TCTAACACACGGGGACAGCATTCATGCCATACTATCAGTGCCATGAAGAA
GGTTGTGAGTGAAGTATGA

protein sequence of Gcaud734.t1

>Gcaud734.t1 ID=Gcaud734.t1|Name=Gcaud734.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MLLHSDAEAKPLDVLHEGNQQAWNTLISSFMGSDWTESSNARTLNDAVIL
ELELLSRMLTYSEIPGRSPDRFEFFPSCVDFHFEVIGNSTNSFADRIYKS
VPAAQTVKPNTNSWDISDDRRRILLHSHYSLESVSLHAKFESIGTHQVWK
VGLRFRFPSWTYGKWPEYPNEGLVFVISVYDENDSLTFKTEEFNTFHFTY
FSKAKPWTGERNMKFPLEIRRLLKEDNTGDSLQIAPRGAEDHSSWRIFEC
SNIPTGGSQNKICLSLECIPNRYGWTKKHEPVEIDSFYIAPQTAYNEMNP
SNTRGQHSCHTISAMKKVVSEV*

mRNA from alignment at NODE_2502_length_5456_cov_5.107735:607..1575+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud734.t1 ID=Gcaud734.t1|Name=Gcaud734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_2502_length_5456_cov_5.107735:607..1575+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTACATTCAGATGCTGAAGCTAAACCGTTGGATGTGCTTCATGA
AGGGAACCAGCAAGCGTGGAATACTCTGATAAGCAGTTTCATGGGATCAG
ACTGGACAGAAAGCTCTAATGCGCGGACATTGAACGATGCGGTAATCTTG
GAACTGGAGTTACTCTCCAGGATGCTTACATATTCAGAGATACCAGGAAG
ATCTCCAGACCGGTTCGAATTTTTTCCATCATGTGTGGATTTTCATTTCG
AGGTCATTGGCAATAGCACAAATTCTTTTGCTGACAGGATTTATAAGTCT
GTTCCAGCGGCACAGACCGTGAAACCAAACACCAACTCATGGGACATAAG
CGATGATCGAAGAAGGATTTTGTTGCATTCTCACTATTCACTGGAATCTG
TTTCATTGCATGCCAAATTTGAGTCCATTGGAACACATCAAGTATGGAAA
GTGGGACTTCGCTTTCGATTTCCATCATGGACGTATGGAAAGTGGCCGGA
GTACCCAAATGAGGGTTTGGTTTTTGTCATATCCGTTTATGATGAAAATG
ATTCTCTTACGTTTAAAACGGAAGAATTCAACACGTTTCACTTCACATAC
TTTTCGAAGGCCAAACCTTGGACGGGAGAAAGAAATATGAAGTTCCCTCT
TGAGATTAGACGCTTGCTCAAGGAAGATAATACTGGCGATTCACTTCAAA
TTGCTCCACGAGGTGCAGAAGATCATTCTTCCTGGCGTATTTTTGAGTGC
TCAAACATTCCAACAGGTGGGTCCCAAAACAAGATATGTCTGTCTTTGGA
ATGCATTCCAAACAGATATGGGTGGACTAAAAAACATGAACCTGTCGAAA
TAGATTCGTTCTATATTGCCCCACAAACCGCTTACAACGAAATGAATCCA
TCTAACACACGGGGACAGCATTCATGCCATACTATCAGTGCCATGAAGAA
GGTTGTGAGTGAAGTATGA

Coding sequence (CDS) from alignment at NODE_2502_length_5456_cov_5.107735:607..1575+

>Gcaud734.t1 ID=Gcaud734.t1|Name=Gcaud734.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_2502_length_5456_cov_5.107735:607..1575+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTACATTCAGATGCTGAAGCTAAACCGTTGGATGTGCTTCATGA
AGGGAACCAGCAAGCGTGGAATACTCTGATAAGCAGTTTCATGGGATCAG
ACTGGACAGAAAGCTCTAATGCGCGGACATTGAACGATGCGGTAATCTTG
GAACTGGAGTTACTCTCCAGGATGCTTACATATTCAGAGATACCAGGAAG
ATCTCCAGACCGGTTCGAATTTTTTCCATCATGTGTGGATTTTCATTTCG
AGGTCATTGGCAATAGCACAAATTCTTTTGCTGACAGGATTTATAAGTCT
GTTCCAGCGGCACAGACCGTGAAACCAAACACCAACTCATGGGACATAAG
CGATGATCGAAGAAGGATTTTGTTGCATTCTCACTATTCACTGGAATCTG
TTTCATTGCATGCCAAATTTGAGTCCATTGGAACACATCAAGTATGGAAA
GTGGGACTTCGCTTTCGATTTCCATCATGGACGTATGGAAAGTGGCCGGA
GTACCCAAATGAGGGTTTGGTTTTTGTCATATCCGTTTATGATGAAAATG
ATTCTCTTACGTTTAAAACGGAAGAATTCAACACGTTTCACTTCACATAC
TTTTCGAAGGCCAAACCTTGGACGGGAGAAAGAAATATGAAGTTCCCTCT
TGAGATTAGACGCTTGCTCAAGGAAGATAATACTGGCGATTCACTTCAAA
TTGCTCCACGAGGTGCAGAAGATCATTCTTCCTGGCGTATTTTTGAGTGC
TCAAACATTCCAACAGGTGGGTCCCAAAACAAGATATGTCTGTCTTTGGA
ATGCATTCCAAACAGATATGGGTGGACTAAAAAACATGAACCTGTCGAAA
TAGATTCGTTCTATATTGCCCCACAAACCGCTTACAACGAAATGAATCCA
TCTAACACACGGGGACAGCATTCATGCCATACTATCAGTGCCATGAAGAA
GGTTGTGAGTGAAGTATGA