Gcaud7337.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7337.t1
Unique Name	Gcaud7337.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	705

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4633_length_2113_cov_4.999011	contig	NODE_4633_length_2113_cov_4.999011:2..2113 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	936053.I1BLM3
Preferred name	MDN1
PFAMs	AAA_5,VWA
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14572
KEGG Pathway	ko03008,map03008
GOs	GO:0000027,GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue	2.77e-163
EggNOG OGs	COG5271@1\|root,KOG1808@2759\|Eukaryota,38FBP@33154\|Opisthokonta,3NUU0@4751\|Fungi,1GT2Q@112252\|Fungi incertae sedis
Description	Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7337	Gcaud7337	Gracilaria caudata M_176_S67 male	gene	NODE_4633_length_2113_cov_4.999011 2..2113 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7337.t1.CDS1	Gcaud7337.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4633_length_2113_cov_4.999011 2..2113 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7337.t1.exon1	Gcaud7337.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4633_length_2113_cov_4.999011 2..2113 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7337.t1	Gcaud7337.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4633_length_2113_cov_4.999011 2..2113 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4633_length_2113_cov_4.999011:2..2113+
coding sequence from alignment at NODE_4633_length_2113_cov_4.999011:2..2113+

mRNA sequence

>Gcaud7337.t1 ID=Gcaud7337.t1|Name=Gcaud7337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp
XQNPPGLYGGRKELSKAFRSRFVEVMVEELPDEDLLFILEKRSGIPQSFT
RKMVAVMRDLQVKRKVSGLFSGREGFVTARDLFRWASRHPRSKEELAVYG
FFLLGERCRISSERDIVRNVLTKHIRVSADVLRDESLYSLGTSSELRTAA
DECMHRSMQLLSLTRDHLKAALTRIGIALTPTTRRMLTLVMHCVANHEPV
LLVGTTGGGKTTICSALCDAMSQKLFTVNCHQQTESSDILGGFRPVRHRD
RDEGIFEWSDGPLVRAMREGCSFLIDEINMAEDAVIERLNSVLEPQRSLL
LSERGAVVNAENTQVEAELVQGHLNFRILATMNPGGDYGKRELSPALRNR
FTEIWIPTPSTMEDFVPIIDDRLQNLVKEASSPNTKTVTKIMVQFLEQSL
RICNSTSSFERDLHGAMEFHISLRDLRAWCDFVVSAVNDCKMDPVEALMH
GARVVFLDGLTVGGTKTNLEKEETRIWYYLLSLASPEVIEGLKKCRYDTT
SEINFESGTLSDKYSVKVDRFVLHRNSETKTDNAASRSTRFCFGAPTTKR
NIARLTRALAVTSRPILLEGPPGSGKSSLISALADLSGNHFTRINLSEST
EMSDLVGTDAPDSVGGSFKFRGGPLLSAMKQGAWLLLDELNLASQSVLEG
LNSVLDHRRTVFIPETNQSVSAHKLFRVFGAQNPVHGGGGRRGLPQSFLN
RFTGV

spliced messenger RNA

>Gcaud7337.t1 ID=Gcaud7337.t1|Name=Gcaud7337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at NODE_4633_length_2113_cov_4.999011:2..2113+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TCAAAATCCGCCTGGTCTGTACGGGGGTCGAAAAGAGCTTTCAAAGGCAT
TTCGAAGTAGATTCGTTGAGGTAATGGTGGAAGAACTGCCAGATGAAGAC
CTGTTATTTATACTTGAAAAGCGTTCAGGAATTCCTCAAAGCTTCACTCG
AAAGATGGTGGCGGTCATGCGAGATCTACAGGTGAAGCGGAAGGTTTCTG
GATTATTTTCGGGGAGAGAAGGTTTTGTCACTGCAAGAGATCTCTTCCGA
TGGGCTTCGCGACATCCTAGATCAAAAGAAGAACTGGCAGTTTATGGCTT
CTTCCTGCTTGGGGAAAGGTGCAGAATCTCAAGTGAAAGAGATATCGTCC
GCAATGTGTTGACCAAGCACATCAGGGTCTCAGCAGATGTTCTGAGGGAT
GAATCTCTGTATTCTCTTGGGACAAGCTCAGAGCTGAGGACTGCAGCTGA
TGAGTGTATGCATCGCAGTATGCAGCTTTTGTCTTTGACTCGTGACCATC
TGAAAGCGGCCTTGACAAGGATTGGAATTGCTCTAACACCCACTACCAGG
CGCATGTTGACCCTCGTCATGCATTGCGTTGCCAATCATGAACCCGTTCT
GCTCGTAGGTACAACCGGAGGTGGCAAAACCACAATTTGTTCTGCTCTAT
GTGATGCAATGTCGCAAAAGCTTTTCACCGTAAACTGTCACCAACAGACA
GAATCTTCCGATATACTGGGTGGATTTCGTCCAGTAAGGCACAGAGATCG
CGATGAGGGAATATTCGAGTGGTCTGATGGACCTCTCGTCCGTGCCATGA
GGGAAGGGTGTTCGTTTTTGATCGATGAAATTAACATGGCTGAAGACGCT
GTGATTGAGAGACTAAACTCAGTTTTAGAACCTCAACGATCCTTGCTTCT
TTCTGAGAGAGGTGCAGTTGTGAATGCGGAAAATACTCAAGTTGAAGCTG
AACTTGTTCAGGGTCATCTGAACTTTCGAATCCTGGCTACAATGAATCCT
GGTGGCGACTACGGGAAACGAGAACTTTCTCCTGCCCTGAGAAATCGATT
CACAGAAATTTGGATACCTACACCGAGCACAATGGAAGATTTTGTTCCTA
TTATTGACGATCGCCTTCAGAACCTCGTGAAAGAAGCTTCAAGCCCAAAC
ACCAAGACTGTCACGAAGATAATGGTTCAGTTCTTAGAACAAAGTCTTCG
AATCTGCAATTCGACTTCATCATTTGAGCGAGACTTGCACGGTGCGATGG
AATTTCATATTTCGTTGAGAGATCTACGAGCGTGGTGTGATTTTGTTGTG
AGTGCCGTGAACGACTGCAAAATGGATCCAGTTGAAGCCTTGATGCATGG
GGCGAGAGTAGTGTTTTTGGATGGACTAACTGTTGGGGGTACAAAGACAA
ACCTGGAAAAAGAGGAAACTAGAATATGGTACTATTTGCTCTCGCTTGCC
TCTCCAGAAGTCATAGAGGGGCTAAAAAAGTGCCGTTATGATACTACATC
GGAGATAAACTTCGAGTCCGGCACTTTAAGTGACAAGTACTCCGTGAAGG
TTGACAGATTTGTTCTTCATCGCAACTCTGAAACAAAAACTGACAACGCT
GCTAGCCGTTCAACCCGATTCTGCTTTGGAGCACCGACCACGAAACGAAA
TATTGCTCGGCTTACCCGGGCTCTTGCAGTCACATCAAGGCCAATTTTGT
TGGAAGGTCCACCTGGTTCTGGAAAGAGTTCTTTGATAAGCGCATTAGCA
GATCTATCCGGAAACCACTTCACTAGAATCAATCTTTCTGAATCAACAGA
AATGTCGGACTTGGTTGGCACAGATGCACCAGATTCCGTTGGAGGTTCCT
TTAAGTTTCGAGGGGGTCCTTTACTCAGTGCTATGAAACAAGGTGCATGG
CTTTTGTTGGATGAACTTAACCTTGCCTCACAATCTGTTCTGGAAGGTCT
AAATTCTGTTTTGGATCACCGGCGAACTGTCTTCATTCCAGAAACGAATC
AATCTGTGTCAGCGCATAAACTTTTTCGGGTTTTCGGAGCTCAGAATCCT
GTACATGGGGGTGGAGGGCGTCGCGGTTTGCCACAAAGTTTCTTGAACCG
ATTCACTGGAGT

protein sequence of Gcaud7337.t1

>Gcaud7337.t1 ID=Gcaud7337.t1|Name=Gcaud7337.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=705bp
XQNPPGLYGGRKELSKAFRSRFVEVMVEELPDEDLLFILEKRSGIPQSFT
RKMVAVMRDLQVKRKVSGLFSGREGFVTARDLFRWASRHPRSKEELAVYG
FFLLGERCRISSERDIVRNVLTKHIRVSADVLRDESLYSLGTSSELRTAA
DECMHRSMQLLSLTRDHLKAALTRIGIALTPTTRRMLTLVMHCVANHEPV
LLVGTTGGGKTTICSALCDAMSQKLFTVNCHQQTESSDILGGFRPVRHRD
RDEGIFEWSDGPLVRAMREGCSFLIDEINMAEDAVIERLNSVLEPQRSLL
LSERGAVVNAENTQVEAELVQGHLNFRILATMNPGGDYGKRELSPALRNR
FTEIWIPTPSTMEDFVPIIDDRLQNLVKEASSPNTKTVTKIMVQFLEQSL
RICNSTSSFERDLHGAMEFHISLRDLRAWCDFVVSAVNDCKMDPVEALMH
GARVVFLDGLTVGGTKTNLEKEETRIWYYLLSLASPEVIEGLKKCRYDTT
SEINFESGTLSDKYSVKVDRFVLHRNSETKTDNAASRSTRFCFGAPTTKR
NIARLTRALAVTSRPILLEGPPGSGKSSLISALADLSGNHFTRINLSEST
EMSDLVGTDAPDSVGGSFKFRGGPLLSAMKQGAWLLLDELNLASQSVLEG
LNSVLDHRRTVFIPETNQSVSAHKLFRVFGAQNPVHGGGGRRGLPQSFLN
RFTGV

mRNA from alignment at NODE_4633_length_2113_cov_4.999011:2..2113+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7337.t1 ID=Gcaud7337.t1|Name=Gcaud7337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at NODE_4633_length_2113_cov_4.999011:2..2113+ (Gracilaria caudata M_176_S67 male)
TCAAAATCCGCCTGGTCTGTACGGGGGTCGAAAAGAGCTTTCAAAGGCAT
TTCGAAGTAGATTCGTTGAGGTAATGGTGGAAGAACTGCCAGATGAAGAC
CTGTTATTTATACTTGAAAAGCGTTCAGGAATTCCTCAAAGCTTCACTCG
AAAGATGGTGGCGGTCATGCGAGATCTACAGGTGAAGCGGAAGGTTTCTG
GATTATTTTCGGGGAGAGAAGGTTTTGTCACTGCAAGAGATCTCTTCCGA
TGGGCTTCGCGACATCCTAGATCAAAAGAAGAACTGGCAGTTTATGGCTT
CTTCCTGCTTGGGGAAAGGTGCAGAATCTCAAGTGAAAGAGATATCGTCC
GCAATGTGTTGACCAAGCACATCAGGGTCTCAGCAGATGTTCTGAGGGAT
GAATCTCTGTATTCTCTTGGGACAAGCTCAGAGCTGAGGACTGCAGCTGA
TGAGTGTATGCATCGCAGTATGCAGCTTTTGTCTTTGACTCGTGACCATC
TGAAAGCGGCCTTGACAAGGATTGGAATTGCTCTAACACCCACTACCAGG
CGCATGTTGACCCTCGTCATGCATTGCGTTGCCAATCATGAACCCGTTCT
GCTCGTAGGTACAACCGGAGGTGGCAAAACCACAATTTGTTCTGCTCTAT
GTGATGCAATGTCGCAAAAGCTTTTCACCGTAAACTGTCACCAACAGACA
GAATCTTCCGATATACTGGGTGGATTTCGTCCAGTAAGGCACAGAGATCG
CGATGAGGGAATATTCGAGTGGTCTGATGGACCTCTCGTCCGTGCCATGA
GGGAAGGGTGTTCGTTTTTGATCGATGAAATTAACATGGCTGAAGACGCT
GTGATTGAGAGACTAAACTCAGTTTTAGAACCTCAACGATCCTTGCTTCT
TTCTGAGAGAGGTGCAGTTGTGAATGCGGAAAATACTCAAGTTGAAGCTG
AACTTGTTCAGGGTCATCTGAACTTTCGAATCCTGGCTACAATGAATCCT
GGTGGCGACTACGGGAAACGAGAACTTTCTCCTGCCCTGAGAAATCGATT
CACAGAAATTTGGATACCTACACCGAGCACAATGGAAGATTTTGTTCCTA
TTATTGACGATCGCCTTCAGAACCTCGTGAAAGAAGCTTCAAGCCCAAAC
ACCAAGACTGTCACGAAGATAATGGTTCAGTTCTTAGAACAAAGTCTTCG
AATCTGCAATTCGACTTCATCATTTGAGCGAGACTTGCACGGTGCGATGG
AATTTCATATTTCGTTGAGAGATCTACGAGCGTGGTGTGATTTTGTTGTG
AGTGCCGTGAACGACTGCAAAATGGATCCAGTTGAAGCCTTGATGCATGG
GGCGAGAGTAGTGTTTTTGGATGGACTAACTGTTGGGGGTACAAAGACAA
ACCTGGAAAAAGAGGAAACTAGAATATGGTACTATTTGCTCTCGCTTGCC
TCTCCAGAAGTCATAGAGGGGCTAAAAAAGTGCCGTTATGATACTACATC
GGAGATAAACTTCGAGTCCGGCACTTTAAGTGACAAGTACTCCGTGAAGG
TTGACAGATTTGTTCTTCATCGCAACTCTGAAACAAAAACTGACAACGCT
GCTAGCCGTTCAACCCGATTCTGCTTTGGAGCACCGACCACGAAACGAAA
TATTGCTCGGCTTACCCGGGCTCTTGCAGTCACATCAAGGCCAATTTTGT
TGGAAGGTCCACCTGGTTCTGGAAAGAGTTCTTTGATAAGCGCATTAGCA
GATCTATCCGGAAACCACTTCACTAGAATCAATCTTTCTGAATCAACAGA
AATGTCGGACTTGGTTGGCACAGATGCACCAGATTCCGTTGGAGGTTCCT
TTAAGTTTCGAGGGGGTCCTTTACTCAGTGCTATGAAACAAGGTGCATGG
CTTTTGTTGGATGAACTTAACCTTGCCTCACAATCTGTTCTGGAAGGTCT
AAATTCTGTTTTGGATCACCGGCGAACTGTCTTCATTCCAGAAACGAATC
AATCTGTGTCAGCGCATAAACTTTTTCGGGTTTTCGGAGCTCAGAATCCT
GTACATGGGGGTGGAGGGCGTCGCGGTTTGCCACAAAGTTTCTTGAACCG
ATTCACTGGAGT

Coding sequence (CDS) from alignment at NODE_4633_length_2113_cov_4.999011:2..2113+

>Gcaud7337.t1 ID=Gcaud7337.t1|Name=Gcaud7337.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2112bp|location=Sequence derived from alignment at NODE_4633_length_2113_cov_4.999011:2..2113+ (Gracilaria caudata M_176_S67 male)
TCAAAATCCGCCTGGTCTGTACGGGGGTCGAAAAGAGCTTTCAAAGGCAT
TTCGAAGTAGATTCGTTGAGGTAATGGTGGAAGAACTGCCAGATGAAGAC
CTGTTATTTATACTTGAAAAGCGTTCAGGAATTCCTCAAAGCTTCACTCG
AAAGATGGTGGCGGTCATGCGAGATCTACAGGTGAAGCGGAAGGTTTCTG
GATTATTTTCGGGGAGAGAAGGTTTTGTCACTGCAAGAGATCTCTTCCGA
TGGGCTTCGCGACATCCTAGATCAAAAGAAGAACTGGCAGTTTATGGCTT
CTTCCTGCTTGGGGAAAGGTGCAGAATCTCAAGTGAAAGAGATATCGTCC
GCAATGTGTTGACCAAGCACATCAGGGTCTCAGCAGATGTTCTGAGGGAT
GAATCTCTGTATTCTCTTGGGACAAGCTCAGAGCTGAGGACTGCAGCTGA
TGAGTGTATGCATCGCAGTATGCAGCTTTTGTCTTTGACTCGTGACCATC
TGAAAGCGGCCTTGACAAGGATTGGAATTGCTCTAACACCCACTACCAGG
CGCATGTTGACCCTCGTCATGCATTGCGTTGCCAATCATGAACCCGTTCT
GCTCGTAGGTACAACCGGAGGTGGCAAAACCACAATTTGTTCTGCTCTAT
GTGATGCAATGTCGCAAAAGCTTTTCACCGTAAACTGTCACCAACAGACA
GAATCTTCCGATATACTGGGTGGATTTCGTCCAGTAAGGCACAGAGATCG
CGATGAGGGAATATTCGAGTGGTCTGATGGACCTCTCGTCCGTGCCATGA
GGGAAGGGTGTTCGTTTTTGATCGATGAAATTAACATGGCTGAAGACGCT
GTGATTGAGAGACTAAACTCAGTTTTAGAACCTCAACGATCCTTGCTTCT
TTCTGAGAGAGGTGCAGTTGTGAATGCGGAAAATACTCAAGTTGAAGCTG
AACTTGTTCAGGGTCATCTGAACTTTCGAATCCTGGCTACAATGAATCCT
GGTGGCGACTACGGGAAACGAGAACTTTCTCCTGCCCTGAGAAATCGATT
CACAGAAATTTGGATACCTACACCGAGCACAATGGAAGATTTTGTTCCTA
TTATTGACGATCGCCTTCAGAACCTCGTGAAAGAAGCTTCAAGCCCAAAC
ACCAAGACTGTCACGAAGATAATGGTTCAGTTCTTAGAACAAAGTCTTCG
AATCTGCAATTCGACTTCATCATTTGAGCGAGACTTGCACGGTGCGATGG
AATTTCATATTTCGTTGAGAGATCTACGAGCGTGGTGTGATTTTGTTGTG
AGTGCCGTGAACGACTGCAAAATGGATCCAGTTGAAGCCTTGATGCATGG
GGCGAGAGTAGTGTTTTTGGATGGACTAACTGTTGGGGGTACAAAGACAA
ACCTGGAAAAAGAGGAAACTAGAATATGGTACTATTTGCTCTCGCTTGCC
TCTCCAGAAGTCATAGAGGGGCTAAAAAAGTGCCGTTATGATACTACATC
GGAGATAAACTTCGAGTCCGGCACTTTAAGTGACAAGTACTCCGTGAAGG
TTGACAGATTTGTTCTTCATCGCAACTCTGAAACAAAAACTGACAACGCT
GCTAGCCGTTCAACCCGATTCTGCTTTGGAGCACCGACCACGAAACGAAA
TATTGCTCGGCTTACCCGGGCTCTTGCAGTCACATCAAGGCCAATTTTGT
TGGAAGGTCCACCTGGTTCTGGAAAGAGTTCTTTGATAAGCGCATTAGCA
GATCTATCCGGAAACCACTTCACTAGAATCAATCTTTCTGAATCAACAGA
AATGTCGGACTTGGTTGGCACAGATGCACCAGATTCCGTTGGAGGTTCCT
TTAAGTTTCGAGGGGGTCCTTTACTCAGTGCTATGAAACAAGGTGCATGG
CTTTTGTTGGATGAACTTAACCTTGCCTCACAATCTGTTCTGGAAGGTCT
AAATTCTGTTTTGGATCACCGGCGAACTGTCTTCATTCCAGAAACGAATC
AATCTGTGTCAGCGCATAAACTTTTTCGGGTTTTCGGAGCTCAGAATCCT
GTACATGGGGGTGGAGGGCGTCGCGGTTTGCCACAAAGTTTCTTGAACCG
ATTCACTGGAGT