Gcaud7335.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7335.t1
Unique Name	Gcaud7335.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_841_length_17153_cov_4.909213	contig	NODE_841_length_17153_cov_4.909213:7289..8650 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	349521.HCH_03306
PFAMs	VPEP,VWA_2
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.16e-23
EggNOG OGs	COG2304@1\|root,COG2304@2\|Bacteria,1RADV@1224\|Proteobacteria,1S5N1@1236\|Gammaproteobacteria
Description	PEP-CTERM motif
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7335	Gcaud7335	Gracilaria caudata M_176_S67 male	gene	NODE_841_length_17153_cov_4.909213 7289..8650 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7335.t1.stop1	Gcaud7335.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_841_length_17153_cov_4.909213 7289..7291 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7335.t1.CDS1	Gcaud7335.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_841_length_17153_cov_4.909213 7289..8650 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7335.t1.exon1	Gcaud7335.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_841_length_17153_cov_4.909213 7289..8650 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7335.t1.start1	Gcaud7335.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_841_length_17153_cov_4.909213 8648..8650 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7335.t1	Gcaud7335.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_841_length_17153_cov_4.909213 7289..8650 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_841_length_17153_cov_4.909213:7289..8650-
coding sequence from alignment at NODE_841_length_17153_cov_4.909213:7289..8650-

mRNA sequence

>Gcaud7335.t1 ID=Gcaud7335.t1|Name=Gcaud7335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
MQTYSLLHSVAVRYELRSVRQSSIKDGLAVDDEKCASINHSLVLLTELFA
TSFVVTTDFPSMALLPFVLLLFASLCLAAPSPTEDSIIPTARCPPGCEAD
VSAAFTKCSRYFTIGCTLIPCSSGGFKCGIRADADVGTVLPGGEVVIDGL
DVYDWFKFQVNLNASHPLRTDFYLLSDATGSMSEEIGEVKRRFGEIVALY
EDITDAHFGIGLYRDEGETGLDHGFKNVQGLTADRDAVYRAINSLRATGG
GDLDEANLVALHKVATESGIGWRHDSRKILVYFGDYPGHEPTCVEGLTIT
RDTVIAELLAKNITVVAASFAPGLDGVPSRYGCSSGSAGGGQGSAIAEDT
GGDLFLNSDSAGFIDRLGDAVNGLTRRYDLDASDCTGKLTTSSEPPFPVV
LEPYDSMVVEQFVRIEAGVCAGGANFECDLRYTEGGASLPPTRLRVVNIR
GCP*

spliced messenger RNA

>Gcaud7335.t1 ID=Gcaud7335.t1|Name=Gcaud7335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_841_length_17153_cov_4.909213:7289..8650- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACGTACTCGTTGCTGCACAGTGTAGCTGTCCGATACGAGCTTCG
ATCGGTGCGTCAGAGCAGTATAAAAGACGGCCTAGCGGTTGACGATGAGA
AGTGCGCCAGCATAAACCATTCATTGGTTCTACTGACAGAACTATTTGCG
ACATCGTTCGTTGTCACTACAGACTTTCCAAGTATGGCTCTTTTACCGTT
CGTTCTTCTTCTTTTCGCTTCGCTTTGTCTTGCCGCTCCCAGCCCGACTG
AAGATTCAATAATCCCCACTGCAAGATGTCCGCCAGGCTGCGAAGCCGAC
GTATCCGCGGCGTTTACAAAGTGTTCTCGTTATTTCACTATTGGATGTAC
GCTTATTCCGTGCAGTAGCGGCGGATTCAAATGTGGAATTCGAGCGGATG
CAGATGTAGGCACTGTGCTTCCAGGTGGTGAAGTTGTGATCGATGGTCTC
GATGTTTATGATTGGTTCAAATTCCAAGTGAATTTGAACGCCTCGCACCC
GTTACGCACAGACTTCTACCTTTTGAGCGACGCCACAGGCTCCATGAGTG
AGGAAATCGGCGAAGTGAAGCGAAGGTTCGGTGAAATTGTTGCTCTCTAC
GAAGATATCACCGACGCTCACTTTGGAATTGGGCTGTATCGAGATGAGGG
AGAGACGGGTTTGGACCATGGGTTTAAGAATGTGCAGGGTCTCACTGCTG
ATCGCGATGCGGTGTATCGTGCTATTAACTCACTGAGGGCAACTGGAGGT
GGAGATCTCGATGAAGCTAATCTTGTGGCTTTGCACAAAGTTGCAACCGA
ATCTGGTATCGGGTGGAGGCACGACTCTCGTAAGATATTGGTGTACTTTG
GTGACTATCCAGGCCATGAGCCAACGTGTGTTGAAGGTCTAACCATCACA
AGAGACACAGTTATTGCCGAATTATTGGCAAAGAATATTACTGTGGTGGC
GGCTAGCTTTGCTCCTGGTCTTGACGGAGTGCCTAGTAGGTATGGATGTT
CTTCTGGAAGCGCTGGAGGTGGGCAGGGCTCCGCAATAGCCGAGGATACT
GGCGGAGATTTGTTCCTGAACAGCGATTCGGCCGGATTCATCGACAGACT
TGGCGACGCCGTCAACGGCCTGACGAGAAGATATGACCTTGACGCTTCGG
ACTGCACCGGGAAGCTCACGACCTCCTCAGAGCCACCGTTCCCTGTTGTT
CTCGAGCCGTATGATTCGATGGTTGTTGAGCAATTTGTGCGTATCGAAGC
TGGAGTGTGTGCGGGAGGGGCGAACTTTGAATGTGACCTGAGGTACACTG
AAGGCGGGGCAAGTTTACCTCCCACTCGTCTGAGGGTGGTGAATATTAGG
GGTTGTCCGTAA

protein sequence of Gcaud7335.t1

>Gcaud7335.t1 ID=Gcaud7335.t1|Name=Gcaud7335.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
MQTYSLLHSVAVRYELRSVRQSSIKDGLAVDDEKCASINHSLVLLTELFA
TSFVVTTDFPSMALLPFVLLLFASLCLAAPSPTEDSIIPTARCPPGCEAD
VSAAFTKCSRYFTIGCTLIPCSSGGFKCGIRADADVGTVLPGGEVVIDGL
DVYDWFKFQVNLNASHPLRTDFYLLSDATGSMSEEIGEVKRRFGEIVALY
EDITDAHFGIGLYRDEGETGLDHGFKNVQGLTADRDAVYRAINSLRATGG
GDLDEANLVALHKVATESGIGWRHDSRKILVYFGDYPGHEPTCVEGLTIT
RDTVIAELLAKNITVVAASFAPGLDGVPSRYGCSSGSAGGGQGSAIAEDT
GGDLFLNSDSAGFIDRLGDAVNGLTRRYDLDASDCTGKLTTSSEPPFPVV
LEPYDSMVVEQFVRIEAGVCAGGANFECDLRYTEGGASLPPTRLRVVNIR
GCP*

mRNA from alignment at NODE_841_length_17153_cov_4.909213:7289..8650-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7335.t1 ID=Gcaud7335.t1|Name=Gcaud7335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_841_length_17153_cov_4.909213:7289..8650- (Gracilaria caudata M_176_S67 male)
ATGCAAACGTACTCGTTGCTGCACAGTGTAGCTGTCCGATACGAGCTTCG
ATCGGTGCGTCAGAGCAGTATAAAAGACGGCCTAGCGGTTGACGATGAGA
AGTGCGCCAGCATAAACCATTCATTGGTTCTACTGACAGAACTATTTGCG
ACATCGTTCGTTGTCACTACAGACTTTCCAAGTATGGCTCTTTTACCGTT
CGTTCTTCTTCTTTTCGCTTCGCTTTGTCTTGCCGCTCCCAGCCCGACTG
AAGATTCAATAATCCCCACTGCAAGATGTCCGCCAGGCTGCGAAGCCGAC
GTATCCGCGGCGTTTACAAAGTGTTCTCGTTATTTCACTATTGGATGTAC
GCTTATTCCGTGCAGTAGCGGCGGATTCAAATGTGGAATTCGAGCGGATG
CAGATGTAGGCACTGTGCTTCCAGGTGGTGAAGTTGTGATCGATGGTCTC
GATGTTTATGATTGGTTCAAATTCCAAGTGAATTTGAACGCCTCGCACCC
GTTACGCACAGACTTCTACCTTTTGAGCGACGCCACAGGCTCCATGAGTG
AGGAAATCGGCGAAGTGAAGCGAAGGTTCGGTGAAATTGTTGCTCTCTAC
GAAGATATCACCGACGCTCACTTTGGAATTGGGCTGTATCGAGATGAGGG
AGAGACGGGTTTGGACCATGGGTTTAAGAATGTGCAGGGTCTCACTGCTG
ATCGCGATGCGGTGTATCGTGCTATTAACTCACTGAGGGCAACTGGAGGT
GGAGATCTCGATGAAGCTAATCTTGTGGCTTTGCACAAAGTTGCAACCGA
ATCTGGTATCGGGTGGAGGCACGACTCTCGTAAGATATTGGTGTACTTTG
GTGACTATCCAGGCCATGAGCCAACGTGTGTTGAAGGTCTAACCATCACA
AGAGACACAGTTATTGCCGAATTATTGGCAAAGAATATTACTGTGGTGGC
GGCTAGCTTTGCTCCTGGTCTTGACGGAGTGCCTAGTAGGTATGGATGTT
CTTCTGGAAGCGCTGGAGGTGGGCAGGGCTCCGCAATAGCCGAGGATACT
GGCGGAGATTTGTTCCTGAACAGCGATTCGGCCGGATTCATCGACAGACT
TGGCGACGCCGTCAACGGCCTGACGAGAAGATATGACCTTGACGCTTCGG
ACTGCACCGGGAAGCTCACGACCTCCTCAGAGCCACCGTTCCCTGTTGTT
CTCGAGCCGTATGATTCGATGGTTGTTGAGCAATTTGTGCGTATCGAAGC
TGGAGTGTGTGCGGGAGGGGCGAACTTTGAATGTGACCTGAGGTACACTG
AAGGCGGGGCAAGTTTACCTCCCACTCGTCTGAGGGTGGTGAATATTAGG
GGTTGTCCGTAA

Coding sequence (CDS) from alignment at NODE_841_length_17153_cov_4.909213:7289..8650-

>Gcaud7335.t1 ID=Gcaud7335.t1|Name=Gcaud7335.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_841_length_17153_cov_4.909213:7289..8650- (Gracilaria caudata M_176_S67 male)
ATGCAAACGTACTCGTTGCTGCACAGTGTAGCTGTCCGATACGAGCTTCG
ATCGGTGCGTCAGAGCAGTATAAAAGACGGCCTAGCGGTTGACGATGAGA
AGTGCGCCAGCATAAACCATTCATTGGTTCTACTGACAGAACTATTTGCG
ACATCGTTCGTTGTCACTACAGACTTTCCAAGTATGGCTCTTTTACCGTT
CGTTCTTCTTCTTTTCGCTTCGCTTTGTCTTGCCGCTCCCAGCCCGACTG
AAGATTCAATAATCCCCACTGCAAGATGTCCGCCAGGCTGCGAAGCCGAC
GTATCCGCGGCGTTTACAAAGTGTTCTCGTTATTTCACTATTGGATGTAC
GCTTATTCCGTGCAGTAGCGGCGGATTCAAATGTGGAATTCGAGCGGATG
CAGATGTAGGCACTGTGCTTCCAGGTGGTGAAGTTGTGATCGATGGTCTC
GATGTTTATGATTGGTTCAAATTCCAAGTGAATTTGAACGCCTCGCACCC
GTTACGCACAGACTTCTACCTTTTGAGCGACGCCACAGGCTCCATGAGTG
AGGAAATCGGCGAAGTGAAGCGAAGGTTCGGTGAAATTGTTGCTCTCTAC
GAAGATATCACCGACGCTCACTTTGGAATTGGGCTGTATCGAGATGAGGG
AGAGACGGGTTTGGACCATGGGTTTAAGAATGTGCAGGGTCTCACTGCTG
ATCGCGATGCGGTGTATCGTGCTATTAACTCACTGAGGGCAACTGGAGGT
GGAGATCTCGATGAAGCTAATCTTGTGGCTTTGCACAAAGTTGCAACCGA
ATCTGGTATCGGGTGGAGGCACGACTCTCGTAAGATATTGGTGTACTTTG
GTGACTATCCAGGCCATGAGCCAACGTGTGTTGAAGGTCTAACCATCACA
AGAGACACAGTTATTGCCGAATTATTGGCAAAGAATATTACTGTGGTGGC
GGCTAGCTTTGCTCCTGGTCTTGACGGAGTGCCTAGTAGGTATGGATGTT
CTTCTGGAAGCGCTGGAGGTGGGCAGGGCTCCGCAATAGCCGAGGATACT
GGCGGAGATTTGTTCCTGAACAGCGATTCGGCCGGATTCATCGACAGACT
TGGCGACGCCGTCAACGGCCTGACGAGAAGATATGACCTTGACGCTTCGG
ACTGCACCGGGAAGCTCACGACCTCCTCAGAGCCACCGTTCCCTGTTGTT
CTCGAGCCGTATGATTCGATGGTTGTTGAGCAATTTGTGCGTATCGAAGC
TGGAGTGTGTGCGGGAGGGGCGAACTTTGAATGTGACCTGAGGTACACTG
AAGGCGGGGCAAGTTTACCTCCCACTCGTCTGAGGGTGGTGAATATTAGG
GGTTGTCCGTAA