Gcaud7319.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7319.t1
Unique Name	Gcaud7319.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	597

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_605_length_21023_cov_4.463214	contig	NODE_605_length_21023_cov_4.463214:1242..3032 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7230.FBpp0161268
Preferred name	DDX42
PFAMs	DEAD,Helicase_C
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K12835
KEGG Pathway	ko03040,map03040
KEGG Module	M00352
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0010941,GO:0015030,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0033036,GO:0034641,GO:0042623,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051179,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Evalue	9.11e-89
EggNOG OGs	COG0513@1\|root,KOG0339@2759\|Eukaryota,38FER@33154\|Opisthokonta,3BCBP@33208\|Metazoa,3CW5F@33213\|Bilateria,41YBK@6656\|Arthropoda,3SK43@50557\|Insecta,45008@7147\|Diptera,45P3W@7214\|Drosophilidae
EC	3.6.4.13
Description	nucleic acid binding
COG category	A
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7319	Gcaud7319	Gracilaria caudata M_176_S67 male	gene	NODE_605_length_21023_cov_4.463214 1242..3032 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7319.t1.stop1	Gcaud7319.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_605_length_21023_cov_4.463214 1242..1244 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7319.t1.CDS1	Gcaud7319.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_605_length_21023_cov_4.463214 1242..3032 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7319.t1.exon1	Gcaud7319.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_605_length_21023_cov_4.463214 1242..3032 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7319.t1.start1	Gcaud7319.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_605_length_21023_cov_4.463214 3030..3032 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7319.t1	Gcaud7319.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_605_length_21023_cov_4.463214 1242..3032 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_605_length_21023_cov_4.463214:1242..3032-
coding sequence from alignment at NODE_605_length_21023_cov_4.463214:1242..3032-

mRNA sequence

>Gcaud7319.t1 ID=Gcaud7319.t1|Name=Gcaud7319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp
MKRARPAPSMFGNDSDSDHTIRRPLSRFRPLAVVTTHAKHTPDDANEEEE
EEEEVVKKSQDEDTLDAFMSSLHHVQTAESKPRKESIRIAKDESESDDAH
ENITQRFDTNTRELAKGNVTENGEDHARDLKLQPVDYAKIKLSEVVWSVY
EPLPRLQLSQEKLKERLTQMGAMLHNGSFFPLTSFDDLALELPKHLLSAL
LNAFASPTPIQRLAIPAALAGRDITGIAKTGSGKTVAYGVPLLSHVARQT
GGSSRGAGPVALVLSPTRELATQITGVLRRFGARAGVLCVVGGHAKYEQF
KRMRDSGAEVIVATPGRLIDMLKMRACGMSRCSFVVVDEADRMFDLGFTD
QVRAILSQVRPDAQRLLFSATFPKVVRGFAEEILKNAVRVVIKGSGGDSM
VNENVAERYRSFANDSERMVWLLEAIVRMREEGLVIVFCGTRGDAAAVAN
SIRTKGMAAACIHGETDAADREDLLKMFRNDEVPLLVTTDLSARGLDIEH
VRNVVNYGSAKSWEWHVHRVGRTGRAGRKGTAWTLVVRGNKTDSEFLCDA
LKAYGRKGGQLPDGLAEIVACGWELRDRSRGRGRRRRAVGGARGGR*

spliced messenger RNA

>Gcaud7319.t1 ID=Gcaud7319.t1|Name=Gcaud7319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at NODE_605_length_21023_cov_4.463214:1242..3032- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGGCGCGACCGGCGCCATCCATGTTTGGCAATGATTCAGATTC
CGACCATACCATTCGAAGACCATTGTCTCGTTTCAGGCCGCTGGCAGTCG
TCACCACGCATGCAAAGCACACTCCTGACGATGCAAACGAAGAAGAAGAA
GAAGAAGAAGAAGTTGTAAAGAAATCTCAAGACGAAGATACTCTGGATGC
ATTCATGAGCAGTTTGCATCATGTTCAGACTGCCGAATCAAAGCCACGGA
AAGAAAGCATCCGGATTGCTAAAGATGAAAGCGAAAGCGACGATGCTCAT
GAAAACATCACACAGCGATTTGATACGAATACTCGTGAGCTGGCCAAAGG
CAACGTCACTGAAAACGGAGAAGATCACGCTCGTGACCTGAAACTACAAC
CGGTCGACTACGCAAAAATCAAGCTCTCGGAAGTTGTGTGGTCCGTATAC
GAACCTCTTCCGCGCCTGCAACTTTCACAAGAAAAGCTCAAGGAACGATT
GACACAAATGGGCGCAATGCTGCATAATGGAAGCTTTTTCCCCTTGACGT
CGTTTGACGATCTGGCACTGGAGCTTCCAAAGCATCTACTCTCGGCTTTG
CTCAACGCTTTTGCTTCACCGACGCCGATTCAGAGGCTGGCCATTCCTGC
CGCGCTGGCTGGACGTGACATTACTGGCATTGCAAAGACAGGCAGCGGGA
AGACCGTGGCGTACGGTGTACCACTTTTGTCACACGTCGCTCGTCAAACA
GGCGGCTCTTCGCGCGGCGCCGGTCCCGTGGCGTTGGTTTTATCGCCCAC
AAGAGAGTTGGCCACGCAGATCACAGGCGTGCTTCGACGCTTCGGTGCTC
GCGCCGGCGTGCTGTGCGTGGTAGGCGGTCACGCCAAATACGAACAGTTC
AAACGCATGCGCGACTCGGGCGCAGAGGTGATTGTTGCCACGCCGGGTCG
GCTCATCGACATGCTCAAGATGCGCGCGTGCGGCATGAGCAGATGTTCAT
TCGTGGTGGTGGATGAGGCGGATCGCATGTTTGACCTGGGTTTCACGGAT
CAGGTGCGTGCGATTCTGTCGCAGGTGCGACCGGATGCGCAGCGGTTGCT
GTTTTCGGCAACGTTTCCAAAGGTTGTGAGAGGGTTTGCGGAGGAGATTC
TGAAGAATGCGGTGCGCGTGGTGATCAAGGGAAGTGGCGGTGACTCGATG
GTGAACGAGAATGTGGCCGAAAGGTATCGCTCGTTCGCTAATGACTCCGA
GAGAATGGTGTGGCTGTTGGAGGCGATTGTGAGGATGCGGGAGGAGGGGC
TGGTGATTGTGTTTTGTGGCACAAGAGGTGATGCTGCGGCGGTAGCAAAC
TCGATTCGAACAAAAGGCATGGCGGCTGCTTGCATCCACGGCGAGACTGA
TGCGGCGGACAGAGAGGACTTGCTGAAGATGTTTCGCAACGACGAAGTGC
CGCTGTTGGTGACGACGGATTTGTCTGCACGCGGACTGGACATTGAACAT
GTGAGGAATGTGGTGAACTACGGAAGCGCTAAGAGTTGGGAATGGCATGT
GCATCGAGTAGGACGAACTGGACGCGCTGGCAGAAAGGGCACGGCTTGGA
CTCTGGTGGTGAGGGGAAACAAGACCGACAGCGAGTTTCTGTGCGATGCG
CTGAAGGCATACGGACGAAAGGGCGGGCAGTTGCCCGACGGACTGGCTGA
AATCGTGGCGTGTGGGTGGGAACTCAGGGATCGCTCGCGCGGACGTGGCA
GAAGGAGACGAGCAGTAGGAGGAGCGCGCGGCGGGCGATAA

protein sequence of Gcaud7319.t1

>Gcaud7319.t1 ID=Gcaud7319.t1|Name=Gcaud7319.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=597bp
MKRARPAPSMFGNDSDSDHTIRRPLSRFRPLAVVTTHAKHTPDDANEEEE
EEEEVVKKSQDEDTLDAFMSSLHHVQTAESKPRKESIRIAKDESESDDAH
ENITQRFDTNTRELAKGNVTENGEDHARDLKLQPVDYAKIKLSEVVWSVY
EPLPRLQLSQEKLKERLTQMGAMLHNGSFFPLTSFDDLALELPKHLLSAL
LNAFASPTPIQRLAIPAALAGRDITGIAKTGSGKTVAYGVPLLSHVARQT
GGSSRGAGPVALVLSPTRELATQITGVLRRFGARAGVLCVVGGHAKYEQF
KRMRDSGAEVIVATPGRLIDMLKMRACGMSRCSFVVVDEADRMFDLGFTD
QVRAILSQVRPDAQRLLFSATFPKVVRGFAEEILKNAVRVVIKGSGGDSM
VNENVAERYRSFANDSERMVWLLEAIVRMREEGLVIVFCGTRGDAAAVAN
SIRTKGMAAACIHGETDAADREDLLKMFRNDEVPLLVTTDLSARGLDIEH
VRNVVNYGSAKSWEWHVHRVGRTGRAGRKGTAWTLVVRGNKTDSEFLCDA
LKAYGRKGGQLPDGLAEIVACGWELRDRSRGRGRRRRAVGGARGGR*

mRNA from alignment at NODE_605_length_21023_cov_4.463214:1242..3032-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7319.t1 ID=Gcaud7319.t1|Name=Gcaud7319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at NODE_605_length_21023_cov_4.463214:1242..3032- (Gracilaria caudata M_176_S67 male)
ATGAAGAGGGCGCGACCGGCGCCATCCATGTTTGGCAATGATTCAGATTC
CGACCATACCATTCGAAGACCATTGTCTCGTTTCAGGCCGCTGGCAGTCG
TCACCACGCATGCAAAGCACACTCCTGACGATGCAAACGAAGAAGAAGAA
GAAGAAGAAGAAGTTGTAAAGAAATCTCAAGACGAAGATACTCTGGATGC
ATTCATGAGCAGTTTGCATCATGTTCAGACTGCCGAATCAAAGCCACGGA
AAGAAAGCATCCGGATTGCTAAAGATGAAAGCGAAAGCGACGATGCTCAT
GAAAACATCACACAGCGATTTGATACGAATACTCGTGAGCTGGCCAAAGG
CAACGTCACTGAAAACGGAGAAGATCACGCTCGTGACCTGAAACTACAAC
CGGTCGACTACGCAAAAATCAAGCTCTCGGAAGTTGTGTGGTCCGTATAC
GAACCTCTTCCGCGCCTGCAACTTTCACAAGAAAAGCTCAAGGAACGATT
GACACAAATGGGCGCAATGCTGCATAATGGAAGCTTTTTCCCCTTGACGT
CGTTTGACGATCTGGCACTGGAGCTTCCAAAGCATCTACTCTCGGCTTTG
CTCAACGCTTTTGCTTCACCGACGCCGATTCAGAGGCTGGCCATTCCTGC
CGCGCTGGCTGGACGTGACATTACTGGCATTGCAAAGACAGGCAGCGGGA
AGACCGTGGCGTACGGTGTACCACTTTTGTCACACGTCGCTCGTCAAACA
GGCGGCTCTTCGCGCGGCGCCGGTCCCGTGGCGTTGGTTTTATCGCCCAC
AAGAGAGTTGGCCACGCAGATCACAGGCGTGCTTCGACGCTTCGGTGCTC
GCGCCGGCGTGCTGTGCGTGGTAGGCGGTCACGCCAAATACGAACAGTTC
AAACGCATGCGCGACTCGGGCGCAGAGGTGATTGTTGCCACGCCGGGTCG
GCTCATCGACATGCTCAAGATGCGCGCGTGCGGCATGAGCAGATGTTCAT
TCGTGGTGGTGGATGAGGCGGATCGCATGTTTGACCTGGGTTTCACGGAT
CAGGTGCGTGCGATTCTGTCGCAGGTGCGACCGGATGCGCAGCGGTTGCT
GTTTTCGGCAACGTTTCCAAAGGTTGTGAGAGGGTTTGCGGAGGAGATTC
TGAAGAATGCGGTGCGCGTGGTGATCAAGGGAAGTGGCGGTGACTCGATG
GTGAACGAGAATGTGGCCGAAAGGTATCGCTCGTTCGCTAATGACTCCGA
GAGAATGGTGTGGCTGTTGGAGGCGATTGTGAGGATGCGGGAGGAGGGGC
TGGTGATTGTGTTTTGTGGCACAAGAGGTGATGCTGCGGCGGTAGCAAAC
TCGATTCGAACAAAAGGCATGGCGGCTGCTTGCATCCACGGCGAGACTGA
TGCGGCGGACAGAGAGGACTTGCTGAAGATGTTTCGCAACGACGAAGTGC
CGCTGTTGGTGACGACGGATTTGTCTGCACGCGGACTGGACATTGAACAT
GTGAGGAATGTGGTGAACTACGGAAGCGCTAAGAGTTGGGAATGGCATGT
GCATCGAGTAGGACGAACTGGACGCGCTGGCAGAAAGGGCACGGCTTGGA
CTCTGGTGGTGAGGGGAAACAAGACCGACAGCGAGTTTCTGTGCGATGCG
CTGAAGGCATACGGACGAAAGGGCGGGCAGTTGCCCGACGGACTGGCTGA
AATCGTGGCGTGTGGGTGGGAACTCAGGGATCGCTCGCGCGGACGTGGCA
GAAGGAGACGAGCAGTAGGAGGAGCGCGCGGCGGGCGATAA

Coding sequence (CDS) from alignment at NODE_605_length_21023_cov_4.463214:1242..3032-

>Gcaud7319.t1 ID=Gcaud7319.t1|Name=Gcaud7319.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1791bp|location=Sequence derived from alignment at NODE_605_length_21023_cov_4.463214:1242..3032- (Gracilaria caudata M_176_S67 male)
ATGAAGAGGGCGCGACCGGCGCCATCCATGTTTGGCAATGATTCAGATTC
CGACCATACCATTCGAAGACCATTGTCTCGTTTCAGGCCGCTGGCAGTCG
TCACCACGCATGCAAAGCACACTCCTGACGATGCAAACGAAGAAGAAGAA
GAAGAAGAAGAAGTTGTAAAGAAATCTCAAGACGAAGATACTCTGGATGC
ATTCATGAGCAGTTTGCATCATGTTCAGACTGCCGAATCAAAGCCACGGA
AAGAAAGCATCCGGATTGCTAAAGATGAAAGCGAAAGCGACGATGCTCAT
GAAAACATCACACAGCGATTTGATACGAATACTCGTGAGCTGGCCAAAGG
CAACGTCACTGAAAACGGAGAAGATCACGCTCGTGACCTGAAACTACAAC
CGGTCGACTACGCAAAAATCAAGCTCTCGGAAGTTGTGTGGTCCGTATAC
GAACCTCTTCCGCGCCTGCAACTTTCACAAGAAAAGCTCAAGGAACGATT
GACACAAATGGGCGCAATGCTGCATAATGGAAGCTTTTTCCCCTTGACGT
CGTTTGACGATCTGGCACTGGAGCTTCCAAAGCATCTACTCTCGGCTTTG
CTCAACGCTTTTGCTTCACCGACGCCGATTCAGAGGCTGGCCATTCCTGC
CGCGCTGGCTGGACGTGACATTACTGGCATTGCAAAGACAGGCAGCGGGA
AGACCGTGGCGTACGGTGTACCACTTTTGTCACACGTCGCTCGTCAAACA
GGCGGCTCTTCGCGCGGCGCCGGTCCCGTGGCGTTGGTTTTATCGCCCAC
AAGAGAGTTGGCCACGCAGATCACAGGCGTGCTTCGACGCTTCGGTGCTC
GCGCCGGCGTGCTGTGCGTGGTAGGCGGTCACGCCAAATACGAACAGTTC
AAACGCATGCGCGACTCGGGCGCAGAGGTGATTGTTGCCACGCCGGGTCG
GCTCATCGACATGCTCAAGATGCGCGCGTGCGGCATGAGCAGATGTTCAT
TCGTGGTGGTGGATGAGGCGGATCGCATGTTTGACCTGGGTTTCACGGAT
CAGGTGCGTGCGATTCTGTCGCAGGTGCGACCGGATGCGCAGCGGTTGCT
GTTTTCGGCAACGTTTCCAAAGGTTGTGAGAGGGTTTGCGGAGGAGATTC
TGAAGAATGCGGTGCGCGTGGTGATCAAGGGAAGTGGCGGTGACTCGATG
GTGAACGAGAATGTGGCCGAAAGGTATCGCTCGTTCGCTAATGACTCCGA
GAGAATGGTGTGGCTGTTGGAGGCGATTGTGAGGATGCGGGAGGAGGGGC
TGGTGATTGTGTTTTGTGGCACAAGAGGTGATGCTGCGGCGGTAGCAAAC
TCGATTCGAACAAAAGGCATGGCGGCTGCTTGCATCCACGGCGAGACTGA
TGCGGCGGACAGAGAGGACTTGCTGAAGATGTTTCGCAACGACGAAGTGC
CGCTGTTGGTGACGACGGATTTGTCTGCACGCGGACTGGACATTGAACAT
GTGAGGAATGTGGTGAACTACGGAAGCGCTAAGAGTTGGGAATGGCATGT
GCATCGAGTAGGACGAACTGGACGCGCTGGCAGAAAGGGCACGGCTTGGA
CTCTGGTGGTGAGGGGAAACAAGACCGACAGCGAGTTTCTGTGCGATGCG
CTGAAGGCATACGGACGAAAGGGCGGGCAGTTGCCCGACGGACTGGCTGA
AATCGTGGCGTGTGGGTGGGAACTCAGGGATCGCTCGCGCGGACGTGGCA
GAAGGAGACGAGCAGTAGGAGGAGCGCGCGGCGGGCGATAA