Gcaud7318.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7318.t1
Unique Name	Gcaud7318.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_605_length_21023_cov_4.463214	contig	NODE_605_length_21023_cov_4.463214:236..1216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703842.1
PFAMs	Glyco_transf_34
Max annot lvl	2759\|Eukaryota
Evalue	8.22e-108
EggNOG OGs	2EAHV@1\|root,2SGRN@2759\|Eukaryota
Description	galactosyl transferase GMA12/MNN10 family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7318	Gcaud7318	Gracilaria caudata M_176_S67 male	gene	NODE_605_length_21023_cov_4.463214 236..1216 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7318.t1.start1	Gcaud7318.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_605_length_21023_cov_4.463214 236..238 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7318.t1.CDS1	Gcaud7318.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_605_length_21023_cov_4.463214 236..1216 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7318.t1.exon1	Gcaud7318.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_605_length_21023_cov_4.463214 236..1216 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7318.t1.stop1	Gcaud7318.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_605_length_21023_cov_4.463214 1214..1216 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7318.t1	Gcaud7318.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_605_length_21023_cov_4.463214 236..1216 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_605_length_21023_cov_4.463214:236..1216+
coding sequence from alignment at NODE_605_length_21023_cov_4.463214:236..1216+

mRNA sequence

>Gcaud7318.t1 ID=Gcaud7318.t1|Name=Gcaud7318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=327bp
MVNDVWFFRELSEIALRNKRRYATRHAFEMVVHTPYETAGLFTPADCTEP
SVARRDSQGACFKAQRSFQLDERAPTFGKIKLALDACVARHDYWLLWSDA
DALLVNHSISLLDVVDDAYDIIVAHDWFMLNAGVMLFRCSPWTIHFLRRV
YDARQFDHARALDQSAFNDFFTKDEQVKAHVKNVPKHLINVYTEEYRPGD
FIIHFAGKLYEATPWGITDIARQFDVLSRIDDVHKISYFFNTRYLLNYFS
GTCVMGPPDKDPNRDCDPNDQRRLKLPEPLIAMSYPNRYRQLQYRNPRFK
HWTDPYDVPGAADIKIRRVDPSSSSS*

spliced messenger RNA

>Gcaud7318.t1 ID=Gcaud7318.t1|Name=Gcaud7318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=981bp|location=Sequence derived from alignment at NODE_605_length_21023_cov_4.463214:236..1216+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAACGACGTGTGGTTTTTCCGTGAGCTCTCCGAAATCGCGCTGCG
CAACAAACGCCGCTATGCCACGCGTCACGCCTTCGAAATGGTCGTGCACA
CGCCTTATGAAACCGCCGGCCTGTTTACACCCGCCGACTGTACGGAACCG
TCCGTCGCGAGGCGCGACTCGCAGGGCGCTTGCTTCAAAGCGCAGCGCAG
CTTTCAGCTGGATGAGCGCGCGCCCACGTTTGGCAAGATCAAGTTGGCGC
TTGACGCATGTGTGGCGCGCCATGATTACTGGCTGTTGTGGAGTGATGCG
GATGCGTTGCTGGTGAACCACTCCATTTCGTTGCTTGACGTTGTGGATGA
TGCGTACGACATCATTGTGGCGCACGATTGGTTCATGCTCAACGCGGGTG
TCATGTTGTTTCGCTGTTCACCGTGGACCATTCACTTCCTCAGACGCGTG
TATGACGCACGTCAGTTTGACCACGCGCGCGCGCTCGATCAAAGCGCCTT
CAATGACTTCTTCACCAAAGACGAGCAGGTGAAAGCGCACGTGAAGAACG
TACCAAAACATCTCATCAACGTTTACACCGAGGAGTATCGCCCCGGTGAC
TTCATCATTCACTTTGCGGGCAAGTTGTACGAGGCCACCCCGTGGGGCAT
CACCGACATTGCGCGCCAATTCGACGTGCTCTCGCGCATCGACGACGTAC
ACAAAATCAGCTACTTCTTTAACACGCGTTACTTACTCAATTACTTCTCC
GGCACCTGCGTCATGGGCCCGCCCGACAAGGACCCCAACCGCGACTGCGA
TCCCAACGACCAGCGCAGACTCAAACTGCCCGAACCACTAATCGCCATGA
GCTATCCGAATCGTTACCGTCAACTGCAATACAGAAACCCCAGATTCAAG
CACTGGACAGATCCCTACGATGTGCCTGGCGCCGCTGATATTAAGATCCG
ACGCGTTGATCCTTCATCATCGTCCTCATAA

protein sequence of Gcaud7318.t1

>Gcaud7318.t1 ID=Gcaud7318.t1|Name=Gcaud7318.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MVNDVWFFRELSEIALRNKRRYATRHAFEMVVHTPYETAGLFTPADCTEP
SVARRDSQGACFKAQRSFQLDERAPTFGKIKLALDACVARHDYWLLWSDA
DALLVNHSISLLDVVDDAYDIIVAHDWFMLNAGVMLFRCSPWTIHFLRRV
YDARQFDHARALDQSAFNDFFTKDEQVKAHVKNVPKHLINVYTEEYRPGD
FIIHFAGKLYEATPWGITDIARQFDVLSRIDDVHKISYFFNTRYLLNYFS
GTCVMGPPDKDPNRDCDPNDQRRLKLPEPLIAMSYPNRYRQLQYRNPRFK
HWTDPYDVPGAADIKIRRVDPSSSSS*

mRNA from alignment at NODE_605_length_21023_cov_4.463214:236..1216+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7318.t1 ID=Gcaud7318.t1|Name=Gcaud7318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=981bp|location=Sequence derived from alignment at NODE_605_length_21023_cov_4.463214:236..1216+ (Gracilaria caudata M_176_S67 male)
ATGGTCAACGACGTGTGGTTTTTCCGTGAGCTCTCCGAAATCGCGCTGCG
CAACAAACGCCGCTATGCCACGCGTCACGCCTTCGAAATGGTCGTGCACA
CGCCTTATGAAACCGCCGGCCTGTTTACACCCGCCGACTGTACGGAACCG
TCCGTCGCGAGGCGCGACTCGCAGGGCGCTTGCTTCAAAGCGCAGCGCAG
CTTTCAGCTGGATGAGCGCGCGCCCACGTTTGGCAAGATCAAGTTGGCGC
TTGACGCATGTGTGGCGCGCCATGATTACTGGCTGTTGTGGAGTGATGCG
GATGCGTTGCTGGTGAACCACTCCATTTCGTTGCTTGACGTTGTGGATGA
TGCGTACGACATCATTGTGGCGCACGATTGGTTCATGCTCAACGCGGGTG
TCATGTTGTTTCGCTGTTCACCGTGGACCATTCACTTCCTCAGACGCGTG
TATGACGCACGTCAGTTTGACCACGCGCGCGCGCTCGATCAAAGCGCCTT
CAATGACTTCTTCACCAAAGACGAGCAGGTGAAAGCGCACGTGAAGAACG
TACCAAAACATCTCATCAACGTTTACACCGAGGAGTATCGCCCCGGTGAC
TTCATCATTCACTTTGCGGGCAAGTTGTACGAGGCCACCCCGTGGGGCAT
CACCGACATTGCGCGCCAATTCGACGTGCTCTCGCGCATCGACGACGTAC
ACAAAATCAGCTACTTCTTTAACACGCGTTACTTACTCAATTACTTCTCC
GGCACCTGCGTCATGGGCCCGCCCGACAAGGACCCCAACCGCGACTGCGA
TCCCAACGACCAGCGCAGACTCAAACTGCCCGAACCACTAATCGCCATGA
GCTATCCGAATCGTTACCGTCAACTGCAATACAGAAACCCCAGATTCAAG
CACTGGACAGATCCCTACGATGTGCCTGGCGCCGCTGATATTAAGATCCG
ACGCGTTGATCCTTCATCATCGTCCTCATAA

Coding sequence (CDS) from alignment at NODE_605_length_21023_cov_4.463214:236..1216+

>Gcaud7318.t1 ID=Gcaud7318.t1|Name=Gcaud7318.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=981bp|location=Sequence derived from alignment at NODE_605_length_21023_cov_4.463214:236..1216+ (Gracilaria caudata M_176_S67 male)
ATGGTCAACGACGTGTGGTTTTTCCGTGAGCTCTCCGAAATCGCGCTGCG
CAACAAACGCCGCTATGCCACGCGTCACGCCTTCGAAATGGTCGTGCACA
CGCCTTATGAAACCGCCGGCCTGTTTACACCCGCCGACTGTACGGAACCG
TCCGTCGCGAGGCGCGACTCGCAGGGCGCTTGCTTCAAAGCGCAGCGCAG
CTTTCAGCTGGATGAGCGCGCGCCCACGTTTGGCAAGATCAAGTTGGCGC
TTGACGCATGTGTGGCGCGCCATGATTACTGGCTGTTGTGGAGTGATGCG
GATGCGTTGCTGGTGAACCACTCCATTTCGTTGCTTGACGTTGTGGATGA
TGCGTACGACATCATTGTGGCGCACGATTGGTTCATGCTCAACGCGGGTG
TCATGTTGTTTCGCTGTTCACCGTGGACCATTCACTTCCTCAGACGCGTG
TATGACGCACGTCAGTTTGACCACGCGCGCGCGCTCGATCAAAGCGCCTT
CAATGACTTCTTCACCAAAGACGAGCAGGTGAAAGCGCACGTGAAGAACG
TACCAAAACATCTCATCAACGTTTACACCGAGGAGTATCGCCCCGGTGAC
TTCATCATTCACTTTGCGGGCAAGTTGTACGAGGCCACCCCGTGGGGCAT
CACCGACATTGCGCGCCAATTCGACGTGCTCTCGCGCATCGACGACGTAC
ACAAAATCAGCTACTTCTTTAACACGCGTTACTTACTCAATTACTTCTCC
GGCACCTGCGTCATGGGCCCGCCCGACAAGGACCCCAACCGCGACTGCGA
TCCCAACGACCAGCGCAGACTCAAACTGCCCGAACCACTAATCGCCATGA
GCTATCCGAATCGTTACCGTCAACTGCAATACAGAAACCCCAGATTCAAG
CACTGGACAGATCCCTACGATGTGCCTGGCGCCGCTGATATTAAGATCCG
ACGCGTTGATCCTTCATCATCGTCCTCATAA