Gcaud7315.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7315.t1
Unique NameGcaud7315.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3204_length_3835_cov_5.416400contigNODE_3204_length_3835_cov_5.416400:2741..3811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7315Gcaud7315Gracilaria caudata M_176_S67 malegeneNODE_3204_length_3835_cov_5.416400 2741..3811 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7315.t1.stop1Gcaud7315.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3204_length_3835_cov_5.416400 2741..2743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7315.t1.CDS1Gcaud7315.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3204_length_3835_cov_5.416400 2741..3811 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7315.t1.exon1Gcaud7315.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3204_length_3835_cov_5.416400 2741..3811 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7315.t1.start1Gcaud7315.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3204_length_3835_cov_5.416400 3809..3811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7315.t1Gcaud7315.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3204_length_3835_cov_5.416400 2741..3811 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7315.t1 ID=Gcaud7315.t1|Name=Gcaud7315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=357bp
MLEDAQVLAACIRAIAHVHLDLEPNLAEDSLRLIYNIMEHSGSSGTHVTK
FCMSSMTRVMETFTKHSSLQITDDILRILTKGNNFAIEGLRNSFRLSAGS
AIKSSSDRANEEANKTAAVGLVACHIGVRKSLDEDGCSSQEFPVQMSSDI
QLLRQLLRNEGETVNLRSCICRALGRLVTLHVSGLGEYVDGILRDMVAIM
SPKSNVRLQICSARSVIQIMKASNIEDSRFEVLQNSITCFLAIKSQLQRG
GLMPKLRNQVAALLNTIGELVLQVFHRASEGLLNEVKSKWDNRWEPNILI
ACVSSHLSLPKYVKYESDCDLEKVMESTPVAERDVMRTILQLTNSLRRPV
EEGASG*
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spliced messenger RNA

>Gcaud7315.t1 ID=Gcaud7315.t1|Name=Gcaud7315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at NODE_3204_length_3835_cov_5.416400:2741..3811- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGAGGATGCCCAAGTACTCGCGGCTTGTATACGAGCAATCGCTCA
TGTTCATCTTGACTTGGAACCGAATCTTGCCGAGGACAGCCTGAGACTGA
TCTACAATATAATGGAGCATTCTGGAAGCAGCGGAACACATGTCACAAAA
TTCTGTATGTCTTCAATGACACGAGTGATGGAAACCTTTACAAAGCACTC
CTCATTGCAAATTACTGACGACATTCTTCGTATCTTAACAAAAGGAAATA
ACTTTGCCATCGAGGGTCTACGAAACTCATTCCGCCTTAGCGCGGGTTCC
GCCATCAAATCATCGTCGGATCGTGCCAATGAAGAGGCAAACAAGACGGC
CGCAGTTGGTCTCGTTGCTTGTCATATAGGTGTCCGAAAGAGTTTAGACG
AAGATGGCTGCAGCTCGCAAGAATTTCCCGTTCAGATGAGCTCGGATATA
CAGTTGCTCCGCCAGTTGCTCCGAAATGAGGGGGAAACCGTGAATCTTCG
TTCTTGTATTTGTAGGGCTCTGGGACGACTTGTAACCCTTCATGTAAGTG
GCCTAGGGGAATACGTTGACGGTATACTCCGCGATATGGTTGCAATCATG
AGCCCCAAGAGCAACGTTCGTCTGCAGATATGTTCAGCGCGGTCTGTGAT
TCAGATCATGAAGGCCTCCAACATCGAAGACTCCCGTTTTGAAGTTCTCC
AGAACAGTATCACGTGTTTTCTTGCGATAAAATCTCAGTTGCAAAGAGGC
GGTCTCATGCCGAAGCTTCGGAATCAGGTGGCTGCCCTGCTGAACACTAT
AGGAGAGTTAGTTTTACAAGTGTTTCACAGGGCATCTGAGGGTCTCCTTA
ATGAAGTCAAGAGTAAGTGGGATAATCGATGGGAACCAAATATTCTGATT
GCTTGTGTTTCATCACATCTTTCTCTGCCGAAGTACGTTAAATACGAAAG
TGATTGTGACTTGGAAAAAGTCATGGAATCCACTCCGGTGGCCGAACGCG
ATGTCATGCGCACCATCCTGCAGCTGACGAACTCTTTGAGGAGACCCGTC
GAGGAAGGTGCTTCCGGGTGA
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protein sequence of Gcaud7315.t1

>Gcaud7315.t1 ID=Gcaud7315.t1|Name=Gcaud7315.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=357bp
MLEDAQVLAACIRAIAHVHLDLEPNLAEDSLRLIYNIMEHSGSSGTHVTK
FCMSSMTRVMETFTKHSSLQITDDILRILTKGNNFAIEGLRNSFRLSAGS
AIKSSSDRANEEANKTAAVGLVACHIGVRKSLDEDGCSSQEFPVQMSSDI
QLLRQLLRNEGETVNLRSCICRALGRLVTLHVSGLGEYVDGILRDMVAIM
SPKSNVRLQICSARSVIQIMKASNIEDSRFEVLQNSITCFLAIKSQLQRG
GLMPKLRNQVAALLNTIGELVLQVFHRASEGLLNEVKSKWDNRWEPNILI
ACVSSHLSLPKYVKYESDCDLEKVMESTPVAERDVMRTILQLTNSLRRPV
EEGASG*
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mRNA from alignment at NODE_3204_length_3835_cov_5.416400:2741..3811-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7315.t1 ID=Gcaud7315.t1|Name=Gcaud7315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at NODE_3204_length_3835_cov_5.416400:2741..3811- (Gracilaria caudata M_176_S67 male)
ATGCTTGAGGATGCCCAAGTACTCGCGGCTTGTATACGAGCAATCGCTCA
TGTTCATCTTGACTTGGAACCGAATCTTGCCGAGGACAGCCTGAGACTGA
TCTACAATATAATGGAGCATTCTGGAAGCAGCGGAACACATGTCACAAAA
TTCTGTATGTCTTCAATGACACGAGTGATGGAAACCTTTACAAAGCACTC
CTCATTGCAAATTACTGACGACATTCTTCGTATCTTAACAAAAGGAAATA
ACTTTGCCATCGAGGGTCTACGAAACTCATTCCGCCTTAGCGCGGGTTCC
GCCATCAAATCATCGTCGGATCGTGCCAATGAAGAGGCAAACAAGACGGC
CGCAGTTGGTCTCGTTGCTTGTCATATAGGTGTCCGAAAGAGTTTAGACG
AAGATGGCTGCAGCTCGCAAGAATTTCCCGTTCAGATGAGCTCGGATATA
CAGTTGCTCCGCCAGTTGCTCCGAAATGAGGGGGAAACCGTGAATCTTCG
TTCTTGTATTTGTAGGGCTCTGGGACGACTTGTAACCCTTCATGTAAGTG
GCCTAGGGGAATACGTTGACGGTATACTCCGCGATATGGTTGCAATCATG
AGCCCCAAGAGCAACGTTCGTCTGCAGATATGTTCAGCGCGGTCTGTGAT
TCAGATCATGAAGGCCTCCAACATCGAAGACTCCCGTTTTGAAGTTCTCC
AGAACAGTATCACGTGTTTTCTTGCGATAAAATCTCAGTTGCAAAGAGGC
GGTCTCATGCCGAAGCTTCGGAATCAGGTGGCTGCCCTGCTGAACACTAT
AGGAGAGTTAGTTTTACAAGTGTTTCACAGGGCATCTGAGGGTCTCCTTA
ATGAAGTCAAGAGTAAGTGGGATAATCGATGGGAACCAAATATTCTGATT
GCTTGTGTTTCATCACATCTTTCTCTGCCGAAGTACGTTAAATACGAAAG
TGATTGTGACTTGGAAAAAGTCATGGAATCCACTCCGGTGGCCGAACGCG
ATGTCATGCGCACCATCCTGCAGCTGACGAACTCTTTGAGGAGACCCGTC
GAGGAAGGTGCTTCCGGGTGA
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Coding sequence (CDS) from alignment at NODE_3204_length_3835_cov_5.416400:2741..3811-

>Gcaud7315.t1 ID=Gcaud7315.t1|Name=Gcaud7315.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1071bp|location=Sequence derived from alignment at NODE_3204_length_3835_cov_5.416400:2741..3811- (Gracilaria caudata M_176_S67 male)
ATGCTTGAGGATGCCCAAGTACTCGCGGCTTGTATACGAGCAATCGCTCA
TGTTCATCTTGACTTGGAACCGAATCTTGCCGAGGACAGCCTGAGACTGA
TCTACAATATAATGGAGCATTCTGGAAGCAGCGGAACACATGTCACAAAA
TTCTGTATGTCTTCAATGACACGAGTGATGGAAACCTTTACAAAGCACTC
CTCATTGCAAATTACTGACGACATTCTTCGTATCTTAACAAAAGGAAATA
ACTTTGCCATCGAGGGTCTACGAAACTCATTCCGCCTTAGCGCGGGTTCC
GCCATCAAATCATCGTCGGATCGTGCCAATGAAGAGGCAAACAAGACGGC
CGCAGTTGGTCTCGTTGCTTGTCATATAGGTGTCCGAAAGAGTTTAGACG
AAGATGGCTGCAGCTCGCAAGAATTTCCCGTTCAGATGAGCTCGGATATA
CAGTTGCTCCGCCAGTTGCTCCGAAATGAGGGGGAAACCGTGAATCTTCG
TTCTTGTATTTGTAGGGCTCTGGGACGACTTGTAACCCTTCATGTAAGTG
GCCTAGGGGAATACGTTGACGGTATACTCCGCGATATGGTTGCAATCATG
AGCCCCAAGAGCAACGTTCGTCTGCAGATATGTTCAGCGCGGTCTGTGAT
TCAGATCATGAAGGCCTCCAACATCGAAGACTCCCGTTTTGAAGTTCTCC
AGAACAGTATCACGTGTTTTCTTGCGATAAAATCTCAGTTGCAAAGAGGC
GGTCTCATGCCGAAGCTTCGGAATCAGGTGGCTGCCCTGCTGAACACTAT
AGGAGAGTTAGTTTTACAAGTGTTTCACAGGGCATCTGAGGGTCTCCTTA
ATGAAGTCAAGAGTAAGTGGGATAATCGATGGGAACCAAATATTCTGATT
GCTTGTGTTTCATCACATCTTTCTCTGCCGAAGTACGTTAAATACGAAAG
TGATTGTGACTTGGAAAAAGTCATGGAATCCACTCCGGTGGCCGAACGCG
ATGTCATGCGCACCATCCTGCAGCTGACGAACTCTTTGAGGAGACCCGTC
GAGGAAGGTGCTTCCGGGTGA
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