Gcaud7302.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7302.t1
Unique Name	Gcaud7302.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	701

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_716_length_19192_cov_4.213758	contig	NODE_716_length_19192_cov_4.213758:10861..12963 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005647732.1
Preferred name	APC3
PFAMs	ANAPC3,TPR_1,TPR_11,TPR_16,TPR_8
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03350
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG Module	M00389
Evalue	3.86e-79
EggNOG OGs	COG0457@1\|root,KOG1126@2759\|Eukaryota,37KQ2@33090\|Viridiplantae,34K1D@3041\|Chlorophyta
Description	Tetratricopeptide repeat
COG category	D
BRITE	ko00000,ko00001,ko00002,ko01009,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7302	Gcaud7302	Gracilaria caudata M_176_S67 male	gene	NODE_716_length_19192_cov_4.213758 10861..12963 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7302.t1.start1	Gcaud7302.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_716_length_19192_cov_4.213758 10861..10863 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7302.t1.CDS1	Gcaud7302.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_716_length_19192_cov_4.213758 10861..12963 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7302.t1.exon1	Gcaud7302.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_716_length_19192_cov_4.213758 10861..12963 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7302.t1.stop1	Gcaud7302.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_716_length_19192_cov_4.213758 12961..12963 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7302.t1	Gcaud7302.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_716_length_19192_cov_4.213758 10861..12963 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_716_length_19192_cov_4.213758:10861..12963+
coding sequence from alignment at NODE_716_length_19192_cov_4.213758:10861..12963+

mRNA sequence

>Gcaud7302.t1 ID=Gcaud7302.t1|Name=Gcaud7302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=701bp
MYTAPLPSNHNLSEHLLRTAAEHSLRAFLEPNAVFLAQLLHTTYPSHASA
NLLATAHLRQGNFSQAAQVLTPPTTPENRYLYAVCLTRIGTADALRDAET
YLRGAHASIDVDIHSIPLNSIPGSAAGLYLLGSICQRTGRKDEAIALYRR
AINANPTLWLAFEALANMGIVTKAEVVLPAQSDAEAFERLQQQPQFFPHT
VESSTPRPSKPPRDMSALRPHSNSMRHLSVRTPRESDFVTPSPIMSRLQT
RAPNEICSPPAPHHVGRHGIRRVSRLAGSPNSAVNGLRLGRRSRNAALDD
SVRNPVDLFATTPDRGSRSITMPMGSSIIKGKSDVSPFATETSFGADNDK
NEIAGAMDLIRSIGQIVSELGRFRCARAIELSNCLPAKHRSSGFVLSLRG
KAFLERGDYVAAEQEFKKALVIDPMRTDGVVEYYSTVLWHLKKEKALAQL
AINVQRIYPVSSSAWCAAGNCYSIQQDPDAALRFFQRAIATSKTPNAYAY
TLCGHEYVVKEDFDSALASYREALNIDERHYNAMYGIGQVLQKQEKFGLA
QNHFRNAVLVNPLNSTLHYHLGVSMAAGANVAAEKASYKTTQHALISALA
ELETAANLDPRNPVPRFERAKILIAMNRLPDARKQLEDLRESLPKEAEVH
YQLSLVCQHLGDSDEALQALHTALDIEPKERKYKKALDSLSNAFEASTCL
*

spliced messenger RNA

>Gcaud7302.t1 ID=Gcaud7302.t1|Name=Gcaud7302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_716_length_19192_cov_4.213758:10861..12963+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACGGCTCCACTCCCTTCTAACCACAATCTGTCAGAGCACCTTCT
GCGCACCGCAGCAGAGCACTCTCTCCGCGCCTTTCTGGAGCCCAATGCAG
TTTTCCTCGCCCAATTGCTGCACACAACATACCCGTCACATGCCTCCGCT
AACTTGCTTGCCACCGCCCATCTCCGTCAAGGTAACTTCTCACAGGCCGC
CCAAGTGCTAACTCCCCCCACAACTCCTGAAAATCGCTACCTCTACGCCG
TATGCCTCACTCGCATCGGCACTGCGGACGCCCTTCGCGATGCCGAAACC
TATCTTCGCGGCGCCCACGCTTCAATTGACGTCGATATTCACTCCATTCC
ACTTAATTCAATCCCTGGATCCGCAGCTGGCCTTTATCTTCTGGGTTCAA
TCTGTCAACGGACGGGCCGAAAAGACGAAGCAATTGCCTTGTATCGCCGA
GCCATAAACGCTAACCCAACACTCTGGCTCGCCTTCGAGGCGTTGGCAAA
CATGGGAATCGTAACAAAAGCAGAAGTTGTACTTCCTGCGCAGTCAGATG
CTGAGGCGTTTGAGCGTCTGCAGCAACAACCGCAATTCTTTCCGCACACG
GTCGAAAGCAGCACCCCACGCCCGTCAAAACCTCCGCGAGACATGTCTGC
TTTGCGACCACATTCAAACTCCATGCGTCATCTGTCCGTCAGAACACCTC
GTGAATCCGATTTCGTAACACCCTCTCCAATAATGAGTCGGTTACAGACG
CGCGCGCCCAACGAGATATGCTCACCGCCGGCACCGCATCATGTGGGGCG
TCATGGCATCAGACGAGTGTCCAGACTTGCCGGTTCTCCAAACAGCGCCG
TTAACGGTCTGCGTTTAGGACGTCGTTCCAGAAACGCAGCTCTGGATGAC
TCAGTTCGAAATCCAGTGGACCTGTTTGCCACTACCCCCGACAGAGGCTC
AAGATCGATCACAATGCCCATGGGTTCGTCCATAATAAAGGGCAAATCAG
ACGTCTCTCCATTCGCCACAGAGACGTCTTTCGGTGCAGACAACGATAAG
AATGAGATCGCGGGCGCTATGGATCTGATTCGAAGTATAGGTCAAATTGT
TTCTGAATTGGGTCGTTTCCGCTGCGCCCGCGCGATTGAGCTATCAAATT
GTCTGCCCGCCAAACATCGAAGCAGTGGGTTCGTACTGTCCCTCAGAGGT
AAAGCATTCCTTGAGCGTGGGGACTACGTGGCAGCGGAGCAAGAGTTCAA
AAAGGCACTTGTTATAGACCCTATGCGTACAGATGGGGTGGTGGAGTATT
ACTCAACGGTCCTATGGCATCTGAAGAAGGAAAAGGCGCTGGCTCAGCTG
GCCATCAATGTACAGCGCATCTATCCGGTATCTTCAAGTGCTTGGTGTGC
GGCGGGCAATTGTTATTCGATACAACAAGATCCTGACGCAGCCCTGAGGT
TCTTCCAAAGGGCAATTGCTACATCAAAGACACCTAACGCATACGCCTAC
ACATTATGTGGGCATGAGTACGTCGTGAAGGAAGACTTTGACTCTGCGCT
CGCATCGTACCGAGAAGCGCTCAACATTGACGAAAGACATTACAACGCAA
TGTACGGAATTGGCCAAGTTCTGCAAAAACAAGAGAAGTTTGGCCTAGCC
CAAAATCATTTCAGGAATGCTGTGCTCGTTAATCCGCTTAACTCGACTCT
CCATTACCACCTTGGGGTGTCGATGGCGGCTGGAGCGAACGTGGCAGCAG
AAAAAGCTTCTTACAAGACAACTCAACATGCTCTCATATCAGCGCTGGCA
GAGCTGGAGACCGCAGCCAATTTAGACCCTCGAAATCCTGTTCCCAGATT
CGAAAGGGCAAAGATTTTGATTGCGATGAATCGGCTACCGGACGCGCGAA
AACAACTGGAAGACTTGAGAGAATCTCTTCCGAAGGAGGCGGAAGTCCAT
TATCAATTGAGCCTAGTGTGCCAACATCTGGGAGACAGTGACGAGGCGCT
GCAAGCGCTGCACACGGCTCTCGATATCGAACCAAAAGAAAGAAAGTACA
AGAAAGCTTTAGATTCACTGAGCAATGCGTTTGAGGCGTCCACATGTTTG
TAG

protein sequence of Gcaud7302.t1

>Gcaud7302.t1 ID=Gcaud7302.t1|Name=Gcaud7302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=701bp
MYTAPLPSNHNLSEHLLRTAAEHSLRAFLEPNAVFLAQLLHTTYPSHASA
NLLATAHLRQGNFSQAAQVLTPPTTPENRYLYAVCLTRIGTADALRDAET
YLRGAHASIDVDIHSIPLNSIPGSAAGLYLLGSICQRTGRKDEAIALYRR
AINANPTLWLAFEALANMGIVTKAEVVLPAQSDAEAFERLQQQPQFFPHT
VESSTPRPSKPPRDMSALRPHSNSMRHLSVRTPRESDFVTPSPIMSRLQT
RAPNEICSPPAPHHVGRHGIRRVSRLAGSPNSAVNGLRLGRRSRNAALDD
SVRNPVDLFATTPDRGSRSITMPMGSSIIKGKSDVSPFATETSFGADNDK
NEIAGAMDLIRSIGQIVSELGRFRCARAIELSNCLPAKHRSSGFVLSLRG
KAFLERGDYVAAEQEFKKALVIDPMRTDGVVEYYSTVLWHLKKEKALAQL
AINVQRIYPVSSSAWCAAGNCYSIQQDPDAALRFFQRAIATSKTPNAYAY
TLCGHEYVVKEDFDSALASYREALNIDERHYNAMYGIGQVLQKQEKFGLA
QNHFRNAVLVNPLNSTLHYHLGVSMAAGANVAAEKASYKTTQHALISALA
ELETAANLDPRNPVPRFERAKILIAMNRLPDARKQLEDLRESLPKEAEVH
YQLSLVCQHLGDSDEALQALHTALDIEPKERKYKKALDSLSNAFEASTCL
*

mRNA from alignment at NODE_716_length_19192_cov_4.213758:10861..12963+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7302.t1 ID=Gcaud7302.t1|Name=Gcaud7302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_716_length_19192_cov_4.213758:10861..12963+ (Gracilaria caudata M_176_S67 male)
ATGTACACGGCTCCACTCCCTTCTAACCACAATCTGTCAGAGCACCTTCT
GCGCACCGCAGCAGAGCACTCTCTCCGCGCCTTTCTGGAGCCCAATGCAG
TTTTCCTCGCCCAATTGCTGCACACAACATACCCGTCACATGCCTCCGCT
AACTTGCTTGCCACCGCCCATCTCCGTCAAGGTAACTTCTCACAGGCCGC
CCAAGTGCTAACTCCCCCCACAACTCCTGAAAATCGCTACCTCTACGCCG
TATGCCTCACTCGCATCGGCACTGCGGACGCCCTTCGCGATGCCGAAACC
TATCTTCGCGGCGCCCACGCTTCAATTGACGTCGATATTCACTCCATTCC
ACTTAATTCAATCCCTGGATCCGCAGCTGGCCTTTATCTTCTGGGTTCAA
TCTGTCAACGGACGGGCCGAAAAGACGAAGCAATTGCCTTGTATCGCCGA
GCCATAAACGCTAACCCAACACTCTGGCTCGCCTTCGAGGCGTTGGCAAA
CATGGGAATCGTAACAAAAGCAGAAGTTGTACTTCCTGCGCAGTCAGATG
CTGAGGCGTTTGAGCGTCTGCAGCAACAACCGCAATTCTTTCCGCACACG
GTCGAAAGCAGCACCCCACGCCCGTCAAAACCTCCGCGAGACATGTCTGC
TTTGCGACCACATTCAAACTCCATGCGTCATCTGTCCGTCAGAACACCTC
GTGAATCCGATTTCGTAACACCCTCTCCAATAATGAGTCGGTTACAGACG
CGCGCGCCCAACGAGATATGCTCACCGCCGGCACCGCATCATGTGGGGCG
TCATGGCATCAGACGAGTGTCCAGACTTGCCGGTTCTCCAAACAGCGCCG
TTAACGGTCTGCGTTTAGGACGTCGTTCCAGAAACGCAGCTCTGGATGAC
TCAGTTCGAAATCCAGTGGACCTGTTTGCCACTACCCCCGACAGAGGCTC
AAGATCGATCACAATGCCCATGGGTTCGTCCATAATAAAGGGCAAATCAG
ACGTCTCTCCATTCGCCACAGAGACGTCTTTCGGTGCAGACAACGATAAG
AATGAGATCGCGGGCGCTATGGATCTGATTCGAAGTATAGGTCAAATTGT
TTCTGAATTGGGTCGTTTCCGCTGCGCCCGCGCGATTGAGCTATCAAATT
GTCTGCCCGCCAAACATCGAAGCAGTGGGTTCGTACTGTCCCTCAGAGGT
AAAGCATTCCTTGAGCGTGGGGACTACGTGGCAGCGGAGCAAGAGTTCAA
AAAGGCACTTGTTATAGACCCTATGCGTACAGATGGGGTGGTGGAGTATT
ACTCAACGGTCCTATGGCATCTGAAGAAGGAAAAGGCGCTGGCTCAGCTG
GCCATCAATGTACAGCGCATCTATCCGGTATCTTCAAGTGCTTGGTGTGC
GGCGGGCAATTGTTATTCGATACAACAAGATCCTGACGCAGCCCTGAGGT
TCTTCCAAAGGGCAATTGCTACATCAAAGACACCTAACGCATACGCCTAC
ACATTATGTGGGCATGAGTACGTCGTGAAGGAAGACTTTGACTCTGCGCT
CGCATCGTACCGAGAAGCGCTCAACATTGACGAAAGACATTACAACGCAA
TGTACGGAATTGGCCAAGTTCTGCAAAAACAAGAGAAGTTTGGCCTAGCC
CAAAATCATTTCAGGAATGCTGTGCTCGTTAATCCGCTTAACTCGACTCT
CCATTACCACCTTGGGGTGTCGATGGCGGCTGGAGCGAACGTGGCAGCAG
AAAAAGCTTCTTACAAGACAACTCAACATGCTCTCATATCAGCGCTGGCA
GAGCTGGAGACCGCAGCCAATTTAGACCCTCGAAATCCTGTTCCCAGATT
CGAAAGGGCAAAGATTTTGATTGCGATGAATCGGCTACCGGACGCGCGAA
AACAACTGGAAGACTTGAGAGAATCTCTTCCGAAGGAGGCGGAAGTCCAT
TATCAATTGAGCCTAGTGTGCCAACATCTGGGAGACAGTGACGAGGCGCT
GCAAGCGCTGCACACGGCTCTCGATATCGAACCAAAAGAAAGAAAGTACA
AGAAAGCTTTAGATTCACTGAGCAATGCGTTTGAGGCGTCCACATGTTTG
TAG

Coding sequence (CDS) from alignment at NODE_716_length_19192_cov_4.213758:10861..12963+

>Gcaud7302.t1 ID=Gcaud7302.t1|Name=Gcaud7302.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2103bp|location=Sequence derived from alignment at NODE_716_length_19192_cov_4.213758:10861..12963+ (Gracilaria caudata M_176_S67 male)
ATGTACACGGCTCCACTCCCTTCTAACCACAATCTGTCAGAGCACCTTCT
GCGCACCGCAGCAGAGCACTCTCTCCGCGCCTTTCTGGAGCCCAATGCAG
TTTTCCTCGCCCAATTGCTGCACACAACATACCCGTCACATGCCTCCGCT
AACTTGCTTGCCACCGCCCATCTCCGTCAAGGTAACTTCTCACAGGCCGC
CCAAGTGCTAACTCCCCCCACAACTCCTGAAAATCGCTACCTCTACGCCG
TATGCCTCACTCGCATCGGCACTGCGGACGCCCTTCGCGATGCCGAAACC
TATCTTCGCGGCGCCCACGCTTCAATTGACGTCGATATTCACTCCATTCC
ACTTAATTCAATCCCTGGATCCGCAGCTGGCCTTTATCTTCTGGGTTCAA
TCTGTCAACGGACGGGCCGAAAAGACGAAGCAATTGCCTTGTATCGCCGA
GCCATAAACGCTAACCCAACACTCTGGCTCGCCTTCGAGGCGTTGGCAAA
CATGGGAATCGTAACAAAAGCAGAAGTTGTACTTCCTGCGCAGTCAGATG
CTGAGGCGTTTGAGCGTCTGCAGCAACAACCGCAATTCTTTCCGCACACG
GTCGAAAGCAGCACCCCACGCCCGTCAAAACCTCCGCGAGACATGTCTGC
TTTGCGACCACATTCAAACTCCATGCGTCATCTGTCCGTCAGAACACCTC
GTGAATCCGATTTCGTAACACCCTCTCCAATAATGAGTCGGTTACAGACG
CGCGCGCCCAACGAGATATGCTCACCGCCGGCACCGCATCATGTGGGGCG
TCATGGCATCAGACGAGTGTCCAGACTTGCCGGTTCTCCAAACAGCGCCG
TTAACGGTCTGCGTTTAGGACGTCGTTCCAGAAACGCAGCTCTGGATGAC
TCAGTTCGAAATCCAGTGGACCTGTTTGCCACTACCCCCGACAGAGGCTC
AAGATCGATCACAATGCCCATGGGTTCGTCCATAATAAAGGGCAAATCAG
ACGTCTCTCCATTCGCCACAGAGACGTCTTTCGGTGCAGACAACGATAAG
AATGAGATCGCGGGCGCTATGGATCTGATTCGAAGTATAGGTCAAATTGT
TTCTGAATTGGGTCGTTTCCGCTGCGCCCGCGCGATTGAGCTATCAAATT
GTCTGCCCGCCAAACATCGAAGCAGTGGGTTCGTACTGTCCCTCAGAGGT
AAAGCATTCCTTGAGCGTGGGGACTACGTGGCAGCGGAGCAAGAGTTCAA
AAAGGCACTTGTTATAGACCCTATGCGTACAGATGGGGTGGTGGAGTATT
ACTCAACGGTCCTATGGCATCTGAAGAAGGAAAAGGCGCTGGCTCAGCTG
GCCATCAATGTACAGCGCATCTATCCGGTATCTTCAAGTGCTTGGTGTGC
GGCGGGCAATTGTTATTCGATACAACAAGATCCTGACGCAGCCCTGAGGT
TCTTCCAAAGGGCAATTGCTACATCAAAGACACCTAACGCATACGCCTAC
ACATTATGTGGGCATGAGTACGTCGTGAAGGAAGACTTTGACTCTGCGCT
CGCATCGTACCGAGAAGCGCTCAACATTGACGAAAGACATTACAACGCAA
TGTACGGAATTGGCCAAGTTCTGCAAAAACAAGAGAAGTTTGGCCTAGCC
CAAAATCATTTCAGGAATGCTGTGCTCGTTAATCCGCTTAACTCGACTCT
CCATTACCACCTTGGGGTGTCGATGGCGGCTGGAGCGAACGTGGCAGCAG
AAAAAGCTTCTTACAAGACAACTCAACATGCTCTCATATCAGCGCTGGCA
GAGCTGGAGACCGCAGCCAATTTAGACCCTCGAAATCCTGTTCCCAGATT
CGAAAGGGCAAAGATTTTGATTGCGATGAATCGGCTACCGGACGCGCGAA
AACAACTGGAAGACTTGAGAGAATCTCTTCCGAAGGAGGCGGAAGTCCAT
TATCAATTGAGCCTAGTGTGCCAACATCTGGGAGACAGTGACGAGGCGCT
GCAAGCGCTGCACACGGCTCTCGATATCGAACCAAAAGAAAGAAAGTACA
AGAAAGCTTTAGATTCACTGAGCAATGCGTTTGAGGCGTCCACATGTTTG
TAG