Gcaud7263.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7263.t2
Unique Name	Gcaud7263.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_86_length_54060_cov_4.498935	contig	NODE_86_length_54060_cov_4.498935:52497..53903 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7263	Gcaud7263	Gracilaria caudata M_176_S67 male	gene	NODE_86_length_54060_cov_4.498935 52497..53903 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7263.t2.stop1	Gcaud7263.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_86_length_54060_cov_4.498935 52497..52499 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7263.t2.CDS1	Gcaud7263.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 52497..53903 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7263.t2.exon1	Gcaud7263.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 52497..53903 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7263.t2.start1	Gcaud7263.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_86_length_54060_cov_4.498935 53901..53903 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7263.t2	Gcaud7263.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_86_length_54060_cov_4.498935 52497..53903 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_86_length_54060_cov_4.498935:52497..53903-
coding sequence from alignment at NODE_86_length_54060_cov_4.498935:52497..53903-

mRNA sequence

>Gcaud7263.t2 ID=Gcaud7263.t2|Name=Gcaud7263.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=469bp
MERLLMSAAFQHTALAALQNNASANSSHRDSVVSAVAAAMRSHSTNSGLL
LRGADLLAFHLTQRTPAPHTSTVRVAASVISASAHLLCQTASGASTTLLA
LLAAARHISSLPFPTPRFSRSSNAVIDDYQFASTIALAMSRHTAHIPVQM
HGCELIRVSTAPTTVIARHAAKEFYTAGCANAVVMALQHHASDRDVVGRG
ITALRAMLLGGGFHGRASKPGLHLDPDFAEIIATTAHKVSLAIAAKDRDL
SSAAVVLAMDIRSATTPSQRDASLSHMGKRIIRRIRFGHKLNFYQSENTS
NSSMYSATRFEQLFNDSTPKTAARRSSFATRELIRTRTNAERLSPRDASR
RTRGTNDLRNTSRRKDGEEEQIKVNRRWRSVSANRPRRTGSLDDTVQTGR
TYGRADRKPPLALTGSEVANLSRQPSNVFGNTSATPTRVVSMDNRVCGDT
DRFRRHARSRMSVQEVAR*

spliced messenger RNA

>Gcaud7263.t2 ID=Gcaud7263.t2|Name=Gcaud7263.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:52497..53903- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGTCTTCTCATGTCCGCCGCTTTCCAACACACCGCCCTCGCCGC
CCTCCAGAACAACGCCTCCGCCAACTCATCTCACCGCGATTCTGTCGTCT
CCGCCGTCGCCGCCGCCATGCGCTCACATTCCACCAACTCTGGCCTTTTG
CTGCGCGGCGCGGACCTGCTCGCCTTCCACCTAACCCAGCGAACCCCGGC
CCCACACACTTCAACAGTCCGCGTTGCCGCCTCCGTCATATCCGCATCTG
CCCATTTGCTCTGCCAAACCGCCTCTGGCGCTTCCACCACTCTCCTCGCT
CTATTGGCCGCGGCCCGCCACATCTCATCGTTACCATTCCCTACTCCCCG
TTTCTCTCGCTCTTCAAACGCTGTCATCGACGATTACCAGTTTGCTAGCA
CTATTGCCCTCGCCATGTCCCGCCACACCGCACATATTCCCGTGCAGATG
CACGGTTGCGAACTCATCCGTGTCTCCACAGCTCCGACCACGGTCATTGC
CCGTCATGCAGCAAAAGAGTTTTACACCGCTGGCTGTGCAAACGCAGTTG
TCATGGCCTTGCAACACCATGCCAGTGACCGTGACGTTGTCGGCAGGGGT
ATCACCGCATTGCGAGCAATGTTGCTTGGCGGTGGTTTCCATGGTAGGGC
TTCTAAACCTGGGCTACACCTAGACCCCGATTTTGCTGAGATTATTGCCA
CTACGGCTCACAAAGTGAGCCTCGCAATTGCTGCCAAGGACCGCGATTTA
TCCTCGGCTGCCGTTGTCCTTGCCATGGACATCCGTTCCGCCACTACTCC
CTCTCAGAGGGACGCTTCCCTGTCGCATATGGGCAAGCGCATCATCAGAC
GTATTCGTTTCGGACACAAGCTTAATTTCTATCAGTCCGAGAATACATCC
AACTCTTCTATGTACAGTGCTACTCGCTTTGAGCAACTTTTCAACGATTC
TACTCCCAAGACGGCGGCTCGAAGAAGTTCCTTCGCAACAAGAGAGCTTA
TCAGAACGCGTACAAATGCAGAGCGGCTTTCTCCGCGCGACGCTTCTAGA
CGCACTAGAGGAACAAATGACTTACGAAACACTTCAAGAAGAAAGGATGG
AGAAGAGGAACAAATCAAAGTCAACAGGAGATGGAGGTCTGTTTCGGCAA
ATCGCCCGAGACGGACAGGTAGTTTGGATGATACAGTGCAGACGGGCAGG
ACCTATGGCAGGGCTGACCGCAAGCCACCACTGGCGCTTACTGGATCAGA
AGTTGCGAACTTGTCACGACAGCCGAGCAACGTGTTTGGAAACACATCTG
CTACCCCTACTCGTGTAGTGTCCATGGATAATCGCGTGTGCGGGGACACG
GATCGATTCCGGAGACACGCTCGGTCGCGTATGTCAGTACAAGAGGTGGC
CAGATAG

protein sequence of Gcaud7263.t2

>Gcaud7263.t2 ID=Gcaud7263.t2|Name=Gcaud7263.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=469bp
MERLLMSAAFQHTALAALQNNASANSSHRDSVVSAVAAAMRSHSTNSGLL
LRGADLLAFHLTQRTPAPHTSTVRVAASVISASAHLLCQTASGASTTLLA
LLAAARHISSLPFPTPRFSRSSNAVIDDYQFASTIALAMSRHTAHIPVQM
HGCELIRVSTAPTTVIARHAAKEFYTAGCANAVVMALQHHASDRDVVGRG
ITALRAMLLGGGFHGRASKPGLHLDPDFAEIIATTAHKVSLAIAAKDRDL
SSAAVVLAMDIRSATTPSQRDASLSHMGKRIIRRIRFGHKLNFYQSENTS
NSSMYSATRFEQLFNDSTPKTAARRSSFATRELIRTRTNAERLSPRDASR
RTRGTNDLRNTSRRKDGEEEQIKVNRRWRSVSANRPRRTGSLDDTVQTGR
TYGRADRKPPLALTGSEVANLSRQPSNVFGNTSATPTRVVSMDNRVCGDT
DRFRRHARSRMSVQEVAR*

mRNA from alignment at NODE_86_length_54060_cov_4.498935:52497..53903-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7263.t2 ID=Gcaud7263.t2|Name=Gcaud7263.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:52497..53903- (Gracilaria caudata M_176_S67 male)
ATGGAGCGTCTTCTCATGTCCGCCGCTTTCCAACACACCGCCCTCGCCGC
CCTCCAGAACAACGCCTCCGCCAACTCATCTCACCGCGATTCTGTCGTCT
CCGCCGTCGCCGCCGCCATGCGCTCACATTCCACCAACTCTGGCCTTTTG
CTGCGCGGCGCGGACCTGCTCGCCTTCCACCTAACCCAGCGAACCCCGGC
CCCACACACTTCAACAGTCCGCGTTGCCGCCTCCGTCATATCCGCATCTG
CCCATTTGCTCTGCCAAACCGCCTCTGGCGCTTCCACCACTCTCCTCGCT
CTATTGGCCGCGGCCCGCCACATCTCATCGTTACCATTCCCTACTCCCCG
TTTCTCTCGCTCTTCAAACGCTGTCATCGACGATTACCAGTTTGCTAGCA
CTATTGCCCTCGCCATGTCCCGCCACACCGCACATATTCCCGTGCAGATG
CACGGTTGCGAACTCATCCGTGTCTCCACAGCTCCGACCACGGTCATTGC
CCGTCATGCAGCAAAAGAGTTTTACACCGCTGGCTGTGCAAACGCAGTTG
TCATGGCCTTGCAACACCATGCCAGTGACCGTGACGTTGTCGGCAGGGGT
ATCACCGCATTGCGAGCAATGTTGCTTGGCGGTGGTTTCCATGGTAGGGC
TTCTAAACCTGGGCTACACCTAGACCCCGATTTTGCTGAGATTATTGCCA
CTACGGCTCACAAAGTGAGCCTCGCAATTGCTGCCAAGGACCGCGATTTA
TCCTCGGCTGCCGTTGTCCTTGCCATGGACATCCGTTCCGCCACTACTCC
CTCTCAGAGGGACGCTTCCCTGTCGCATATGGGCAAGCGCATCATCAGAC
GTATTCGTTTCGGACACAAGCTTAATTTCTATCAGTCCGAGAATACATCC
AACTCTTCTATGTACAGTGCTACTCGCTTTGAGCAACTTTTCAACGATTC
TACTCCCAAGACGGCGGCTCGAAGAAGTTCCTTCGCAACAAGAGAGCTTA
TCAGAACGCGTACAAATGCAGAGCGGCTTTCTCCGCGCGACGCTTCTAGA
CGCACTAGAGGAACAAATGACTTACGAAACACTTCAAGAAGAAAGGATGG
AGAAGAGGAACAAATCAAAGTCAACAGGAGATGGAGGTCTGTTTCGGCAA
ATCGCCCGAGACGGACAGGTAGTTTGGATGATACAGTGCAGACGGGCAGG
ACCTATGGCAGGGCTGACCGCAAGCCACCACTGGCGCTTACTGGATCAGA
AGTTGCGAACTTGTCACGACAGCCGAGCAACGTGTTTGGAAACACATCTG
CTACCCCTACTCGTGTAGTGTCCATGGATAATCGCGTGTGCGGGGACACG
GATCGATTCCGGAGACACGCTCGGTCGCGTATGTCAGTACAAGAGGTGGC
CAGATAG

Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:52497..53903-

>Gcaud7263.t2 ID=Gcaud7263.t2|Name=Gcaud7263.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1407bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:52497..53903- (Gracilaria caudata M_176_S67 male)
ATGGAGCGTCTTCTCATGTCCGCCGCTTTCCAACACACCGCCCTCGCCGC
CCTCCAGAACAACGCCTCCGCCAACTCATCTCACCGCGATTCTGTCGTCT
CCGCCGTCGCCGCCGCCATGCGCTCACATTCCACCAACTCTGGCCTTTTG
CTGCGCGGCGCGGACCTGCTCGCCTTCCACCTAACCCAGCGAACCCCGGC
CCCACACACTTCAACAGTCCGCGTTGCCGCCTCCGTCATATCCGCATCTG
CCCATTTGCTCTGCCAAACCGCCTCTGGCGCTTCCACCACTCTCCTCGCT
CTATTGGCCGCGGCCCGCCACATCTCATCGTTACCATTCCCTACTCCCCG
TTTCTCTCGCTCTTCAAACGCTGTCATCGACGATTACCAGTTTGCTAGCA
CTATTGCCCTCGCCATGTCCCGCCACACCGCACATATTCCCGTGCAGATG
CACGGTTGCGAACTCATCCGTGTCTCCACAGCTCCGACCACGGTCATTGC
CCGTCATGCAGCAAAAGAGTTTTACACCGCTGGCTGTGCAAACGCAGTTG
TCATGGCCTTGCAACACCATGCCAGTGACCGTGACGTTGTCGGCAGGGGT
ATCACCGCATTGCGAGCAATGTTGCTTGGCGGTGGTTTCCATGGTAGGGC
TTCTAAACCTGGGCTACACCTAGACCCCGATTTTGCTGAGATTATTGCCA
CTACGGCTCACAAAGTGAGCCTCGCAATTGCTGCCAAGGACCGCGATTTA
TCCTCGGCTGCCGTTGTCCTTGCCATGGACATCCGTTCCGCCACTACTCC
CTCTCAGAGGGACGCTTCCCTGTCGCATATGGGCAAGCGCATCATCAGAC
GTATTCGTTTCGGACACAAGCTTAATTTCTATCAGTCCGAGAATACATCC
AACTCTTCTATGTACAGTGCTACTCGCTTTGAGCAACTTTTCAACGATTC
TACTCCCAAGACGGCGGCTCGAAGAAGTTCCTTCGCAACAAGAGAGCTTA
TCAGAACGCGTACAAATGCAGAGCGGCTTTCTCCGCGCGACGCTTCTAGA
CGCACTAGAGGAACAAATGACTTACGAAACACTTCAAGAAGAAAGGATGG
AGAAGAGGAACAAATCAAAGTCAACAGGAGATGGAGGTCTGTTTCGGCAA
ATCGCCCGAGACGGACAGGTAGTTTGGATGATACAGTGCAGACGGGCAGG
ACCTATGGCAGGGCTGACCGCAAGCCACCACTGGCGCTTACTGGATCAGA
AGTTGCGAACTTGTCACGACAGCCGAGCAACGTGTTTGGAAACACATCTG
CTACCCCTACTCGTGTAGTGTCCATGGATAATCGCGTGTGCGGGGACACG
GATCGATTCCGGAGACACGCTCGGTCGCGTATGTCAGTACAAGAGGTGGC
CAGATAG