Gcaud7253.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7253.t1
Unique NameGcaud7253.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_86_length_54060_cov_4.498935contigNODE_86_length_54060_cov_4.498935:33247..33888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO077CT
PFAMsDUF1995
Max annot lvl2759|Eukaryota
Evalue5.15e-25
EggNOG OGs28J60@1|root,2QRI3@2759|Eukaryota
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7253Gcaud7253Gracilaria caudata M_176_S67 malegeneNODE_86_length_54060_cov_4.498935 33247..33888 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7253.t1.start1Gcaud7253.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_86_length_54060_cov_4.498935 33247..33249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7253.t1.CDS1Gcaud7253.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_86_length_54060_cov_4.498935 33247..33888 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7253.t1.exon1Gcaud7253.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_86_length_54060_cov_4.498935 33247..33888 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7253.t1.stop1Gcaud7253.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_86_length_54060_cov_4.498935 33886..33888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7253.t1Gcaud7253.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_86_length_54060_cov_4.498935 33247..33888 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7253.t1 ID=Gcaud7253.t1|Name=Gcaud7253.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=214bp
MRVTVELDPSAGDETYTLLKRSIPIARQVCEAMRREGDGDVLMLLPDAGA
AALARRDIADGESLRLEGMEEGTVHKDAAAVAVVAPRASEVEALREVAER
ALEAGVPLVVLNADLVDMGVTGLSLNARRLRKQLLDTFEAGFVLRLVSGG
VLLREWPGTWDLWEEHGDGFRWKTSFDAAPNAEQMDEALFGDSGGGASVM
DRLRGFLRVYMRG*
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spliced messenger RNA

>Gcaud7253.t1 ID=Gcaud7253.t1|Name=Gcaud7253.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:33247..33888+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGACGGTGGAGTTGGATCCGTCGGCAGGCGATGAGACGTACAC
GTTGCTCAAGCGCTCAATACCGATTGCACGCCAGGTATGCGAAGCGATGC
GCCGAGAGGGCGATGGCGACGTGCTGATGCTGCTACCGGACGCAGGCGCG
GCGGCACTGGCGAGGCGAGATATTGCTGACGGCGAGTCGCTGCGACTGGA
GGGCATGGAAGAAGGCACGGTGCACAAGGACGCTGCGGCGGTGGCGGTGG
TGGCGCCGCGCGCCAGCGAGGTAGAGGCGCTACGCGAGGTGGCCGAGCGC
GCGTTGGAGGCGGGTGTGCCGCTGGTGGTGCTCAACGCGGATCTGGTGGA
CATGGGCGTGACGGGGCTGTCCCTCAACGCGCGGCGGCTGCGGAAGCAGC
TGCTGGACACGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGAGCGGCGGG
GTGCTACTTCGCGAGTGGCCTGGTACATGGGACCTGTGGGAGGAGCACGG
AGATGGCTTCCGATGGAAGACGAGCTTCGACGCGGCGCCCAACGCGGAGC
AGATGGACGAGGCGCTGTTCGGCGATAGTGGCGGCGGGGCGAGCGTGATG
GACCGGCTGCGGGGCTTTCTCCGCGTGTACATGCGCGGCTAG
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protein sequence of Gcaud7253.t1

>Gcaud7253.t1 ID=Gcaud7253.t1|Name=Gcaud7253.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=214bp
MRVTVELDPSAGDETYTLLKRSIPIARQVCEAMRREGDGDVLMLLPDAGA
AALARRDIADGESLRLEGMEEGTVHKDAAAVAVVAPRASEVEALREVAER
ALEAGVPLVVLNADLVDMGVTGLSLNARRLRKQLLDTFEAGFVLRLVSGG
VLLREWPGTWDLWEEHGDGFRWKTSFDAAPNAEQMDEALFGDSGGGASVM
DRLRGFLRVYMRG*
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mRNA from alignment at NODE_86_length_54060_cov_4.498935:33247..33888+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7253.t1 ID=Gcaud7253.t1|Name=Gcaud7253.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:33247..33888+ (Gracilaria caudata M_176_S67 male)
ATGCGCGTGACGGTGGAGTTGGATCCGTCGGCAGGCGATGAGACGTACAC
GTTGCTCAAGCGCTCAATACCGATTGCACGCCAGGTATGCGAAGCGATGC
GCCGAGAGGGCGATGGCGACGTGCTGATGCTGCTACCGGACGCAGGCGCG
GCGGCACTGGCGAGGCGAGATATTGCTGACGGCGAGTCGCTGCGACTGGA
GGGCATGGAAGAAGGCACGGTGCACAAGGACGCTGCGGCGGTGGCGGTGG
TGGCGCCGCGCGCCAGCGAGGTAGAGGCGCTACGCGAGGTGGCCGAGCGC
GCGTTGGAGGCGGGTGTGCCGCTGGTGGTGCTCAACGCGGATCTGGTGGA
CATGGGCGTGACGGGGCTGTCCCTCAACGCGCGGCGGCTGCGGAAGCAGC
TGCTGGACACGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGAGCGGCGGG
GTGCTACTTCGCGAGTGGCCTGGTACATGGGACCTGTGGGAGGAGCACGG
AGATGGCTTCCGATGGAAGACGAGCTTCGACGCGGCGCCCAACGCGGAGC
AGATGGACGAGGCGCTGTTCGGCGATAGTGGCGGCGGGGCGAGCGTGATG
GACCGGCTGCGGGGCTTTCTCCGCGTGTACATGCGCGGCTAG
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Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:33247..33888+

>Gcaud7253.t1 ID=Gcaud7253.t1|Name=Gcaud7253.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=642bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:33247..33888+ (Gracilaria caudata M_176_S67 male)
ATGCGCGTGACGGTGGAGTTGGATCCGTCGGCAGGCGATGAGACGTACAC
GTTGCTCAAGCGCTCAATACCGATTGCACGCCAGGTATGCGAAGCGATGC
GCCGAGAGGGCGATGGCGACGTGCTGATGCTGCTACCGGACGCAGGCGCG
GCGGCACTGGCGAGGCGAGATATTGCTGACGGCGAGTCGCTGCGACTGGA
GGGCATGGAAGAAGGCACGGTGCACAAGGACGCTGCGGCGGTGGCGGTGG
TGGCGCCGCGCGCCAGCGAGGTAGAGGCGCTACGCGAGGTGGCCGAGCGC
GCGTTGGAGGCGGGTGTGCCGCTGGTGGTGCTCAACGCGGATCTGGTGGA
CATGGGCGTGACGGGGCTGTCCCTCAACGCGCGGCGGCTGCGGAAGCAGC
TGCTGGACACGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGAGCGGCGGG
GTGCTACTTCGCGAGTGGCCTGGTACATGGGACCTGTGGGAGGAGCACGG
AGATGGCTTCCGATGGAAGACGAGCTTCGACGCGGCGCCCAACGCGGAGC
AGATGGACGAGGCGCTGTTCGGCGATAGTGGCGGCGGGGCGAGCGTGATG
GACCGGCTGCGGGGCTTTCTCCGCGTGTACATGCGCGGCTAG
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