Gcaud7250.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7250.t1
Unique Name	Gcaud7250.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	631

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_86_length_54060_cov_4.498935	contig	NODE_86_length_54060_cov_4.498935:25035..27230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704397.1
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05662,ko:K05663
KEGG TC	3.A.1.210
KEGG Pathway	ko02010,map02010
Evalue	2.78e-182
EggNOG OGs	COG5265@1\|root,KOG0057@2759\|Eukaryota
Description	ATP-binding cassette subfamily B
COG category	O
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7250	Gcaud7250	Gracilaria caudata M_176_S67 male	gene	NODE_86_length_54060_cov_4.498935 25035..27230 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7250.t1	Gcaud7250.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_86_length_54060_cov_4.498935 25035..27230 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7250.t1.start1	Gcaud7250.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_86_length_54060_cov_4.498935 25035..25037 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7250.t1.CDS1	Gcaud7250.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 25035..26321 +
Gcaud7250.t1.CDS2	Gcaud7250.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 26446..26464 +
Gcaud7250.t1.CDS3	Gcaud7250.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 26547..26786 +
Gcaud7250.t1.CDS4	Gcaud7250.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 26884..27230 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7250.t1.exon1	Gcaud7250.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 25035..26321 +
Gcaud7250.t1.exon2	Gcaud7250.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 26446..26464 +
Gcaud7250.t1.exon3	Gcaud7250.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 26547..26786 +
Gcaud7250.t1.exon4	Gcaud7250.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 26884..27230 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7250.t1.intron1	Gcaud7250.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_86_length_54060_cov_4.498935 26322..26445 +
Gcaud7250.t1.intron2	Gcaud7250.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_86_length_54060_cov_4.498935 26465..26546 +
Gcaud7250.t1.intron3	Gcaud7250.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_86_length_54060_cov_4.498935 26787..26883 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7250.t1.stop1	Gcaud7250.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_86_length_54060_cov_4.498935 27228..27230 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_86_length_54060_cov_4.498935:25035..27230+
coding sequence from alignment at NODE_86_length_54060_cov_4.498935:25035..27230+

mRNA sequence

>Gcaud7250.t1 ID=Gcaud7250.t1|Name=Gcaud7250.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=631bp
MISIIVSKLIGVTVPFFFKRIIDNLMTHSTKASAETFGLTVSAILLHGLA
RLLSSISHEMRSCVFAKAGQRVGRSITATSFAHIQSLEVAFHNNAQTGAV
TRVVDRGTRSVLTIFRGLIFAFMPSLFELLLVCGVLFTRFSLWYVAVVLV
TFVAFISWTLYINDKLGRVRRAMNNVENDASAKLTDSLINVEAVKAFDNA
DFELNRYDKVLMEYEKLAISNEWHYAALNIGQGAIYTAGLTLILLRAAQG
VATGTITIGSVAMLATMVQQLWVPLNFLGWQYREVKQSLIDMQNLFDVLK
RAPRIAEAPNATNIMVEGGEIVFSNVTFLYPEPDESLVFTRKVPEVARSN
GNESSSYTHRKLALDSVSFRVPPGKSLALVGSSGSGKSTVTRLLTRLYDV
TSGRILIDGQDISLASMESLRRVVSIVPQDTALFNDTIAYNIRYGRPSAT
DEEVVAAAKAASIHEVIMRTPQGYQTLVGERGVRLSGGERQRLSVARAFL
KGSQIIVEDESTSALDTMTEMEVSNALQKLGVNRTRIIVAHRLSTIMNVD
HIVVLREGKKVEEGSFADLVQKEHGVFRAMWERQQKRKDEDGLLDEFEDP
YMRNGSFYNGERGRREQGGDLLHGEVPPRG*

spliced messenger RNA

>Gcaud7250.t1 ID=Gcaud7250.t1|Name=Gcaud7250.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1893bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:25035..27230+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCCATCATTGTATCGAAACTCATTGGTGTCACCGTGCCCTTTTT
CTTCAAACGAATAATTGACAATCTCATGACACATTCTACAAAGGCTTCCG
CGGAGACTTTCGGTCTGACAGTATCTGCAATCTTACTTCACGGTCTTGCT
CGTCTTCTGTCCTCAATATCCCACGAGATGCGGAGTTGTGTTTTTGCCAA
GGCTGGTCAGCGTGTGGGCAGAAGCATCACTGCAACATCTTTTGCACATA
TTCAGTCGTTGGAAGTGGCATTTCACAACAACGCACAGACTGGCGCTGTA
ACGCGTGTTGTCGACAGAGGTACCAGGAGTGTACTTACCATTTTCCGCGG
TCTGATATTCGCTTTCATGCCAAGCTTGTTTGAGCTTCTGTTAGTCTGTG
GCGTTCTTTTCACTCGTTTTTCTCTCTGGTACGTCGCTGTCGTTCTCGTC
ACTTTTGTGGCCTTTATCTCGTGGACACTTTATATCAATGATAAACTTGG
CAGAGTACGAAGAGCAATGAATAATGTGGAGAACGATGCTTCTGCAAAGC
TTACCGACTCACTCATCAACGTGGAAGCTGTTAAAGCGTTCGATAACGCT
GACTTCGAGTTGAATAGATATGACAAAGTATTGATGGAGTACGAGAAATT
AGCTATCAGCAACGAGTGGCACTACGCTGCACTTAATATTGGACAAGGTG
CTATCTACACAGCAGGGCTCACCCTCATTCTTCTTCGGGCAGCACAAGGT
GTTGCAACTGGAACCATCACAATTGGTTCCGTAGCAATGCTAGCAACTAT
GGTGCAACAGCTATGGGTTCCATTGAACTTTCTTGGTTGGCAGTATCGCG
AAGTGAAACAGAGCCTAATTGATATGCAAAATCTGTTCGATGTACTAAAA
AGAGCGCCACGAATCGCTGAAGCTCCCAACGCGACCAATATCATGGTTGA
GGGAGGGGAAATTGTATTCAGCAATGTTACTTTTTTGTATCCGGAACCGG
ATGAGTCTCTGGTGTTCACAAGGAAAGTCCCCGAGGTTGCTCGCAGTAAT
GGTAACGAGTCATCGTCATATACGCACAGAAAACTTGCATTAGATAGTGT
GAGCTTTCGGGTTCCTCCAGGAAAGAGCCTGGCCCTGGTTGGCTCTAGCG
GATCTGGGAAAAGCACTGTCACCAGACTGCTGACTCGGTTGTACGATGTT
ACCAGCGGTCGGATTTTGATCGATGGGCAGGACATATCTTTGGCATCAAT
GGAATCCTTGCGACGTGTAGTAAGCATTGTTCCGCAGGATACAGCACTCT
TCAACGATACAATTGCGTACAATATTCGATATGGAAGACCTTCAGCGACT
GACGAAGAGGTTGTCGCGGCCGCTAAGGCAGCTTCGATCCATGAGGTAAT
TATGCGGACACCACAAGGATACCAGACACTTGTCGGTGAGCGCGGTGTAC
GCCTATCTGGAGGTGAACGACAAAGACTTTCTGTGGCCAGAGCTTTTCTG
AAAGGTAGCCAGATCATCGTCGAGGATGAAAGCACCAGCGCTCTCGATAC
CATGACGGAAATGGAGGTGTCAAATGCACTTCAGAAGCTTGGGGTAAACA
GAACGCGAATCATTGTAGCTCATCGTCTGAGTACCATTATGAACGTAGAC
CATATCGTCGTGCTGAGGGAAGGAAAGAAAGTAGAAGAAGGCAGTTTTGC
GGATTTGGTTCAAAAAGAGCACGGCGTTTTCAGGGCAATGTGGGAAAGGC
AACAGAAAAGAAAAGATGAAGATGGCCTTCTTGACGAGTTTGAGGATCCA
TACATGAGAAACGGATCTTTCTATAATGGAGAAAGAGGACGACGTGAACA
AGGGGGAGATCTGCTTCATGGGGAAGTTCCACCAAGAGGATGA

protein sequence of Gcaud7250.t1

>Gcaud7250.t1 ID=Gcaud7250.t1|Name=Gcaud7250.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=631bp
MISIIVSKLIGVTVPFFFKRIIDNLMTHSTKASAETFGLTVSAILLHGLA
RLLSSISHEMRSCVFAKAGQRVGRSITATSFAHIQSLEVAFHNNAQTGAV
TRVVDRGTRSVLTIFRGLIFAFMPSLFELLLVCGVLFTRFSLWYVAVVLV
TFVAFISWTLYINDKLGRVRRAMNNVENDASAKLTDSLINVEAVKAFDNA
DFELNRYDKVLMEYEKLAISNEWHYAALNIGQGAIYTAGLTLILLRAAQG
VATGTITIGSVAMLATMVQQLWVPLNFLGWQYREVKQSLIDMQNLFDVLK
RAPRIAEAPNATNIMVEGGEIVFSNVTFLYPEPDESLVFTRKVPEVARSN
GNESSSYTHRKLALDSVSFRVPPGKSLALVGSSGSGKSTVTRLLTRLYDV
TSGRILIDGQDISLASMESLRRVVSIVPQDTALFNDTIAYNIRYGRPSAT
DEEVVAAAKAASIHEVIMRTPQGYQTLVGERGVRLSGGERQRLSVARAFL
KGSQIIVEDESTSALDTMTEMEVSNALQKLGVNRTRIIVAHRLSTIMNVD
HIVVLREGKKVEEGSFADLVQKEHGVFRAMWERQQKRKDEDGLLDEFEDP
YMRNGSFYNGERGRREQGGDLLHGEVPPRG*

mRNA from alignment at NODE_86_length_54060_cov_4.498935:25035..27230+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7250.t1 ID=Gcaud7250.t1|Name=Gcaud7250.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2196bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:25035..27230+ (Gracilaria caudata M_176_S67 male)
ATGATATCCATCATTGTATCGAAACTCATTGGTGTCACCGTGCCCTTTTT
CTTCAAACGAATAATTGACAATCTCATGACACATTCTACAAAGGCTTCCG
CGGAGACTTTCGGTCTGACAGTATCTGCAATCTTACTTCACGGTCTTGCT
CGTCTTCTGTCCTCAATATCCCACGAGATGCGGAGTTGTGTTTTTGCCAA
GGCTGGTCAGCGTGTGGGCAGAAGCATCACTGCAACATCTTTTGCACATA
TTCAGTCGTTGGAAGTGGCATTTCACAACAACGCACAGACTGGCGCTGTA
ACGCGTGTTGTCGACAGAGGTACCAGGAGTGTACTTACCATTTTCCGCGG
TCTGATATTCGCTTTCATGCCAAGCTTGTTTGAGCTTCTGTTAGTCTGTG
GCGTTCTTTTCACTCGTTTTTCTCTCTGGTACGTCGCTGTCGTTCTCGTC
ACTTTTGTGGCCTTTATCTCGTGGACACTTTATATCAATGATAAACTTGG
CAGAGTACGAAGAGCAATGAATAATGTGGAGAACGATGCTTCTGCAAAGC
TTACCGACTCACTCATCAACGTGGAAGCTGTTAAAGCGTTCGATAACGCT
GACTTCGAGTTGAATAGATATGACAAAGTATTGATGGAGTACGAGAAATT
AGCTATCAGCAACGAGTGGCACTACGCTGCACTTAATATTGGACAAGGTG
CTATCTACACAGCAGGGCTCACCCTCATTCTTCTTCGGGCAGCACAAGGT
GTTGCAACTGGAACCATCACAATTGGTTCCGTAGCAATGCTAGCAACTAT
GGTGCAACAGCTATGGGTTCCATTGAACTTTCTTGGTTGGCAGTATCGCG
AAGTGAAACAGAGCCTAATTGATATGCAAAATCTGTTCGATGTACTAAAA
AGAGCGCCACGAATCGCTGAAGCTCCCAACGCGACCAATATCATGGTTGA
GGGAGGGGAAATTGTATTCAGCAATGTTACTTTTTTGTATCCGGAACCGG
ATGAGTCTCTGGTGTTCACAAGGAAAGTCCCCGAGGTTGCTCGCAGTAAT
GGTAACGAGTCATCGTCATATACGCACAGAAAACTTGCATTAGATAGTGT
GAGCTTTCGGGTTCCTCCAGGAAAGAGCCTGGCCCTGGTTGGCTCTAGCG
GATCTGGGAAAAGCACTGTCACCAGACTGCTGACTCGGTTGTACGATGTT
ACCAGCGGTCGGATTTTGATCGATGGGCAGGACATATCTTTGGCATCAAT
GGAATCCTTGCGACGTGTAGTAAGCATTGTTCCGCAGGTAAGTTAAGAGT
TTTAACTCCCTGGTTATTGATTATGAAGCTTAGTTTTCTCCCGTTAACCC
TGAGTTCGATCACCCTGACCCACTAACACCTCAAATGGTTACGTCAACGT
GACGAACACAGGATACAGCACTCTTCAACGGTAAGTTGCTCCATTTATGT
TGTGTCTCAAGCACAAACGGCTTCCCGATACTAATCCCGGGACATTTATA
TGCTCCCAACAGATACAATTGCGTACAATATTCGATATGGAAGACCTTCA
GCGACTGACGAAGAGGTTGTCGCGGCCGCTAAGGCAGCTTCGATCCATGA
GGTAATTATGCGGACACCACAAGGATACCAGACACTTGTCGGTGAGCGCG
GTGTACGCCTATCTGGAGGTGAACGACAAAGACTTTCTGTGGCCAGAGCT
TTTCTGAAAGGTAGCCAGATCATCGTCGAGGATGAAAGCACCAGCGCTCT
CGGTAAGTTGTGCGAGAATTCATTGTCGTCATCTCCTTCTGTCCGTCAGG
CAATTTCTAACTTCCACTGGTTGCGTCAAAACACTTGTGTAACCTTCAGA
TACCATGACGGAAATGGAGGTGTCAAATGCACTTCAGAAGCTTGGGGTAA
ACAGAACGCGAATCATTGTAGCTCATCGTCTGAGTACCATTATGAACGTA
GACCATATCGTCGTGCTGAGGGAAGGAAAGAAAGTAGAAGAAGGCAGTTT
TGCGGATTTGGTTCAAAAAGAGCACGGCGTTTTCAGGGCAATGTGGGAAA
GGCAACAGAAAAGAAAAGATGAAGATGGCCTTCTTGACGAGTTTGAGGAT
CCATACATGAGAAACGGATCTTTCTATAATGGAGAAAGAGGACGACGTGA
ACAAGGGGGAGATCTGCTTCATGGGGAAGTTCCACCAAGAGGATGA

Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:25035..27230+

>Gcaud7250.t1 ID=Gcaud7250.t1|Name=Gcaud7250.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1893bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:25035..27230+ (Gracilaria caudata M_176_S67 male)
ATGATATCCATCATTGTATCGAAACTCATTGGTGTCACCGTGCCCTTTTT
CTTCAAACGAATAATTGACAATCTCATGACACATTCTACAAAGGCTTCCG
CGGAGACTTTCGGTCTGACAGTATCTGCAATCTTACTTCACGGTCTTGCT
CGTCTTCTGTCCTCAATATCCCACGAGATGCGGAGTTGTGTTTTTGCCAA
GGCTGGTCAGCGTGTGGGCAGAAGCATCACTGCAACATCTTTTGCACATA
TTCAGTCGTTGGAAGTGGCATTTCACAACAACGCACAGACTGGCGCTGTA
ACGCGTGTTGTCGACAGAGGTACCAGGAGTGTACTTACCATTTTCCGCGG
TCTGATATTCGCTTTCATGCCAAGCTTGTTTGAGCTTCTGTTAGTCTGTG
GCGTTCTTTTCACTCGTTTTTCTCTCTGGTACGTCGCTGTCGTTCTCGTC
ACTTTTGTGGCCTTTATCTCGTGGACACTTTATATCAATGATAAACTTGG
CAGAGTACGAAGAGCAATGAATAATGTGGAGAACGATGCTTCTGCAAAGC
TTACCGACTCACTCATCAACGTGGAAGCTGTTAAAGCGTTCGATAACGCT
GACTTCGAGTTGAATAGATATGACAAAGTATTGATGGAGTACGAGAAATT
AGCTATCAGCAACGAGTGGCACTACGCTGCACTTAATATTGGACAAGGTG
CTATCTACACAGCAGGGCTCACCCTCATTCTTCTTCGGGCAGCACAAGGT
GTTGCAACTGGAACCATCACAATTGGTTCCGTAGCAATGCTAGCAACTAT
GGTGCAACAGCTATGGGTTCCATTGAACTTTCTTGGTTGGCAGTATCGCG
AAGTGAAACAGAGCCTAATTGATATGCAAAATCTGTTCGATGTACTAAAA
AGAGCGCCACGAATCGCTGAAGCTCCCAACGCGACCAATATCATGGTTGA
GGGAGGGGAAATTGTATTCAGCAATGTTACTTTTTTGTATCCGGAACCGG
ATGAGTCTCTGGTGTTCACAAGGAAAGTCCCCGAGGTTGCTCGCAGTAAT
GGTAACGAGTCATCGTCATATACGCACAGAAAACTTGCATTAGATAGTGT
GAGCTTTCGGGTTCCTCCAGGAAAGAGCCTGGCCCTGGTTGGCTCTAGCG
GATCTGGGAAAAGCACTGTCACCAGACTGCTGACTCGGTTGTACGATGTT
ACCAGCGGTCGGATTTTGATCGATGGGCAGGACATATCTTTGGCATCAAT
GGAATCCTTGCGACGTGTAGTAAGCATTGTTCCGCAGGATACAGCACTCT
TCAACGATACAATTGCGTACAATATTCGATATGGAAGACCTTCAGCGACT
GACGAAGAGGTTGTCGCGGCCGCTAAGGCAGCTTCGATCCATGAGGTAAT
TATGCGGACACCACAAGGATACCAGACACTTGTCGGTGAGCGCGGTGTAC
GCCTATCTGGAGGTGAACGACAAAGACTTTCTGTGGCCAGAGCTTTTCTG
AAAGGTAGCCAGATCATCGTCGAGGATGAAAGCACCAGCGCTCTCGATAC
CATGACGGAAATGGAGGTGTCAAATGCACTTCAGAAGCTTGGGGTAAACA
GAACGCGAATCATTGTAGCTCATCGTCTGAGTACCATTATGAACGTAGAC
CATATCGTCGTGCTGAGGGAAGGAAAGAAAGTAGAAGAAGGCAGTTTTGC
GGATTTGGTTCAAAAAGAGCACGGCGTTTTCAGGGCAATGTGGGAAAGGC
AACAGAAAAGAAAAGATGAAGATGGCCTTCTTGACGAGTTTGAGGATCCA
TACATGAGAAACGGATCTTTCTATAATGGAGAAAGAGGACGACGTGAACA
AGGGGGAGATCTGCTTCATGGGGAAGTTCCACCAAGAGGATGA