Gcaud7249.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7249.t1
Unique Name	Gcaud7249.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	455

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_86_length_54060_cov_4.498935	contig	NODE_86_length_54060_cov_4.498935:22559..23923 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708502.1
Preferred name	HARS
PFAMs	HGTP_anticodon,WHEP-TRS,tRNA-synt_His
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01892,ko:K06675
KEGG Reaction	R03655
KEGG Pathway	ko00970,ko04111,map00970,map04111
KEGG Module	M00359,M00360
GOs	GO:0000003,GO:0000122,GO:0000166,GO:0002119,GO:0002164,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004821,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048468,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue	5.02e-142
EggNOG OGs	COG0124@1\|root,KOG1936@2759\|Eukaryota
EC	6.1.1.21
Description	Histidyl-trna synthetase
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7249	Gcaud7249	Gracilaria caudata M_176_S67 male	gene	NODE_86_length_54060_cov_4.498935 22559..23923 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7249.t1.start1	Gcaud7249.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_86_length_54060_cov_4.498935 22559..22561 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7249.t1.CDS1	Gcaud7249.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 22559..23923 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7249.t1.exon1	Gcaud7249.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 22559..23923 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7249.t1.stop1	Gcaud7249.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_86_length_54060_cov_4.498935 23921..23923 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7249.t1	Gcaud7249.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_86_length_54060_cov_4.498935 22559..23923 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_86_length_54060_cov_4.498935:22559..23923+
coding sequence from alignment at NODE_86_length_54060_cov_4.498935:22559..23923+

mRNA sequence

>Gcaud7249.t1 ID=Gcaud7249.t1|Name=Gcaud7249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=455bp
MAVREQAFTKIKGVFRNHGAVSIDTPVFELRDVLQNKYGEDSKLIYDLSD
DMSSETGEKLSLRYDLSVPFARYIASNNVVNIKRFHIGKVYRRDRPAMER
GRFREFYQCDFDIAGQYPSMIPDAEVLVVMMEMFDALAVTSEYHEKLLGS
FSIKVSNRVILDSIMRVCGVPDDKLRTICSAIDKLDKMSWSQVREEMVLE
KDLDPHVADAIEPYVMLKGEPYEVLASLREHSQLVELCSDALDEMEKLFD
LVAVMRKDLPQRLSFDISLARGLDYYTGVIFEAVLMDRGINLGSIGAGGR
YDDLVGMFKKNTIPCVGCSLGIERIMNLMQKAAEQQAKAASSNGNGTIKA
ACTKVLVASQKGCMKERMQLCSELWRGGIAAEFSYNENWNQGKQIASALK
SFIPLVAFVGEDELQNGEVTLKNLAKEEQRPIRRECIVDTIREELRAAGE
NTIE*

spliced messenger RNA

>Gcaud7249.t1 ID=Gcaud7249.t1|Name=Gcaud7249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:22559..23923+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTGCGCGAACAAGCCTTTACCAAAATCAAGGGCGTCTTTCGAAA
CCACGGAGCGGTTTCTATCGATACTCCCGTGTTTGAATTGCGTGACGTTC
TGCAAAACAAATATGGAGAAGATTCGAAGTTGATCTATGATCTCTCAGAT
GATATGTCTAGTGAAACTGGAGAAAAGCTGTCTTTGCGATATGACCTATC
AGTTCCTTTTGCGCGTTACATTGCATCTAATAATGTTGTCAACATCAAAA
GATTTCATATTGGAAAAGTTTATAGACGAGATCGCCCTGCAATGGAGCGC
GGAAGATTCCGAGAGTTTTATCAGTGCGACTTTGACATTGCTGGTCAATA
TCCTTCCATGATCCCCGATGCTGAGGTTTTGGTCGTTATGATGGAAATGT
TCGACGCTCTTGCTGTTACAAGTGAATATCATGAAAAATTGCTTGGCAGC
TTTAGTATAAAGGTCTCTAACCGTGTCATTCTTGATTCAATTATGAGGGT
TTGTGGCGTTCCTGATGACAAGCTGCGTACTATATGTTCCGCCATTGATA
AGCTTGATAAGATGAGTTGGAGTCAGGTGAGGGAGGAAATGGTTCTCGAA
AAGGACCTGGATCCACACGTGGCCGATGCAATTGAACCTTATGTTATGCT
CAAAGGAGAGCCATACGAAGTGCTCGCTTCCTTGCGAGAGCACTCTCAAT
TAGTTGAGCTATGTTCGGATGCTCTCGATGAGATGGAGAAACTGTTTGAT
TTGGTAGCTGTAATGAGAAAAGACTTGCCTCAACGACTTTCCTTCGATAT
TAGTCTAGCTCGAGGACTGGATTATTACACAGGTGTCATATTTGAAGCCG
TTTTGATGGACCGAGGAATCAATCTCGGTTCCATTGGTGCTGGCGGCCGG
TACGATGACCTTGTTGGTATGTTTAAAAAGAACACCATCCCTTGCGTTGG
ATGCTCTCTAGGAATCGAGCGAATAATGAACTTGATGCAGAAGGCTGCAG
AACAACAAGCAAAAGCGGCATCCAGTAATGGAAATGGAACCATCAAAGCT
GCCTGCACAAAGGTTTTGGTCGCCTCTCAAAAAGGCTGCATGAAGGAACG
GATGCAACTGTGTTCAGAACTATGGCGAGGTGGTATCGCAGCTGAATTTA
GCTATAACGAAAACTGGAATCAAGGGAAGCAGATTGCAAGTGCATTAAAA
TCCTTCATTCCACTGGTGGCGTTCGTTGGTGAGGATGAATTGCAAAACGG
GGAAGTGACGTTAAAGAACTTGGCGAAGGAAGAACAGCGACCCATTCGCA
GAGAATGTATTGTGGATACCATTCGAGAGGAGCTGCGAGCCGCCGGTGAA
AACACGATTGAATAG

protein sequence of Gcaud7249.t1

>Gcaud7249.t1 ID=Gcaud7249.t1|Name=Gcaud7249.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=455bp
MAVREQAFTKIKGVFRNHGAVSIDTPVFELRDVLQNKYGEDSKLIYDLSD
DMSSETGEKLSLRYDLSVPFARYIASNNVVNIKRFHIGKVYRRDRPAMER
GRFREFYQCDFDIAGQYPSMIPDAEVLVVMMEMFDALAVTSEYHEKLLGS
FSIKVSNRVILDSIMRVCGVPDDKLRTICSAIDKLDKMSWSQVREEMVLE
KDLDPHVADAIEPYVMLKGEPYEVLASLREHSQLVELCSDALDEMEKLFD
LVAVMRKDLPQRLSFDISLARGLDYYTGVIFEAVLMDRGINLGSIGAGGR
YDDLVGMFKKNTIPCVGCSLGIERIMNLMQKAAEQQAKAASSNGNGTIKA
ACTKVLVASQKGCMKERMQLCSELWRGGIAAEFSYNENWNQGKQIASALK
SFIPLVAFVGEDELQNGEVTLKNLAKEEQRPIRRECIVDTIREELRAAGE
NTIE*

mRNA from alignment at NODE_86_length_54060_cov_4.498935:22559..23923+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7249.t1 ID=Gcaud7249.t1|Name=Gcaud7249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:22559..23923+ (Gracilaria caudata M_176_S67 male)
ATGGCAGTGCGCGAACAAGCCTTTACCAAAATCAAGGGCGTCTTTCGAAA
CCACGGAGCGGTTTCTATCGATACTCCCGTGTTTGAATTGCGTGACGTTC
TGCAAAACAAATATGGAGAAGATTCGAAGTTGATCTATGATCTCTCAGAT
GATATGTCTAGTGAAACTGGAGAAAAGCTGTCTTTGCGATATGACCTATC
AGTTCCTTTTGCGCGTTACATTGCATCTAATAATGTTGTCAACATCAAAA
GATTTCATATTGGAAAAGTTTATAGACGAGATCGCCCTGCAATGGAGCGC
GGAAGATTCCGAGAGTTTTATCAGTGCGACTTTGACATTGCTGGTCAATA
TCCTTCCATGATCCCCGATGCTGAGGTTTTGGTCGTTATGATGGAAATGT
TCGACGCTCTTGCTGTTACAAGTGAATATCATGAAAAATTGCTTGGCAGC
TTTAGTATAAAGGTCTCTAACCGTGTCATTCTTGATTCAATTATGAGGGT
TTGTGGCGTTCCTGATGACAAGCTGCGTACTATATGTTCCGCCATTGATA
AGCTTGATAAGATGAGTTGGAGTCAGGTGAGGGAGGAAATGGTTCTCGAA
AAGGACCTGGATCCACACGTGGCCGATGCAATTGAACCTTATGTTATGCT
CAAAGGAGAGCCATACGAAGTGCTCGCTTCCTTGCGAGAGCACTCTCAAT
TAGTTGAGCTATGTTCGGATGCTCTCGATGAGATGGAGAAACTGTTTGAT
TTGGTAGCTGTAATGAGAAAAGACTTGCCTCAACGACTTTCCTTCGATAT
TAGTCTAGCTCGAGGACTGGATTATTACACAGGTGTCATATTTGAAGCCG
TTTTGATGGACCGAGGAATCAATCTCGGTTCCATTGGTGCTGGCGGCCGG
TACGATGACCTTGTTGGTATGTTTAAAAAGAACACCATCCCTTGCGTTGG
ATGCTCTCTAGGAATCGAGCGAATAATGAACTTGATGCAGAAGGCTGCAG
AACAACAAGCAAAAGCGGCATCCAGTAATGGAAATGGAACCATCAAAGCT
GCCTGCACAAAGGTTTTGGTCGCCTCTCAAAAAGGCTGCATGAAGGAACG
GATGCAACTGTGTTCAGAACTATGGCGAGGTGGTATCGCAGCTGAATTTA
GCTATAACGAAAACTGGAATCAAGGGAAGCAGATTGCAAGTGCATTAAAA
TCCTTCATTCCACTGGTGGCGTTCGTTGGTGAGGATGAATTGCAAAACGG
GGAAGTGACGTTAAAGAACTTGGCGAAGGAAGAACAGCGACCCATTCGCA
GAGAATGTATTGTGGATACCATTCGAGAGGAGCTGCGAGCCGCCGGTGAA
AACACGATTGAATAG

Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:22559..23923+

>Gcaud7249.t1 ID=Gcaud7249.t1|Name=Gcaud7249.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1365bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:22559..23923+ (Gracilaria caudata M_176_S67 male)
ATGGCAGTGCGCGAACAAGCCTTTACCAAAATCAAGGGCGTCTTTCGAAA
CCACGGAGCGGTTTCTATCGATACTCCCGTGTTTGAATTGCGTGACGTTC
TGCAAAACAAATATGGAGAAGATTCGAAGTTGATCTATGATCTCTCAGAT
GATATGTCTAGTGAAACTGGAGAAAAGCTGTCTTTGCGATATGACCTATC
AGTTCCTTTTGCGCGTTACATTGCATCTAATAATGTTGTCAACATCAAAA
GATTTCATATTGGAAAAGTTTATAGACGAGATCGCCCTGCAATGGAGCGC
GGAAGATTCCGAGAGTTTTATCAGTGCGACTTTGACATTGCTGGTCAATA
TCCTTCCATGATCCCCGATGCTGAGGTTTTGGTCGTTATGATGGAAATGT
TCGACGCTCTTGCTGTTACAAGTGAATATCATGAAAAATTGCTTGGCAGC
TTTAGTATAAAGGTCTCTAACCGTGTCATTCTTGATTCAATTATGAGGGT
TTGTGGCGTTCCTGATGACAAGCTGCGTACTATATGTTCCGCCATTGATA
AGCTTGATAAGATGAGTTGGAGTCAGGTGAGGGAGGAAATGGTTCTCGAA
AAGGACCTGGATCCACACGTGGCCGATGCAATTGAACCTTATGTTATGCT
CAAAGGAGAGCCATACGAAGTGCTCGCTTCCTTGCGAGAGCACTCTCAAT
TAGTTGAGCTATGTTCGGATGCTCTCGATGAGATGGAGAAACTGTTTGAT
TTGGTAGCTGTAATGAGAAAAGACTTGCCTCAACGACTTTCCTTCGATAT
TAGTCTAGCTCGAGGACTGGATTATTACACAGGTGTCATATTTGAAGCCG
TTTTGATGGACCGAGGAATCAATCTCGGTTCCATTGGTGCTGGCGGCCGG
TACGATGACCTTGTTGGTATGTTTAAAAAGAACACCATCCCTTGCGTTGG
ATGCTCTCTAGGAATCGAGCGAATAATGAACTTGATGCAGAAGGCTGCAG
AACAACAAGCAAAAGCGGCATCCAGTAATGGAAATGGAACCATCAAAGCT
GCCTGCACAAAGGTTTTGGTCGCCTCTCAAAAAGGCTGCATGAAGGAACG
GATGCAACTGTGTTCAGAACTATGGCGAGGTGGTATCGCAGCTGAATTTA
GCTATAACGAAAACTGGAATCAAGGGAAGCAGATTGCAAGTGCATTAAAA
TCCTTCATTCCACTGGTGGCGTTCGTTGGTGAGGATGAATTGCAAAACGG
GGAAGTGACGTTAAAGAACTTGGCGAAGGAAGAACAGCGACCCATTCGCA
GAGAATGTATTGTGGATACCATTCGAGAGGAGCTGCGAGCCGCCGGTGAA
AACACGATTGAATAG