Gcaud7244.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7244.t1
Unique NameGcaud7244.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length781
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_86_length_54060_cov_4.498935contigNODE_86_length_54060_cov_4.498935:9599..11941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ27773
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue3.72e-09
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7244Gcaud7244Gracilaria caudata M_176_S67 malegeneNODE_86_length_54060_cov_4.498935 9599..11941 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7244.t1.stop1Gcaud7244.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_86_length_54060_cov_4.498935 9599..9601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7244.t1.CDS1Gcaud7244.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_86_length_54060_cov_4.498935 9599..11941 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7244.t1.exon1Gcaud7244.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_86_length_54060_cov_4.498935 9599..11941 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7244.t1.start1Gcaud7244.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_86_length_54060_cov_4.498935 11939..11941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7244.t1Gcaud7244.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_86_length_54060_cov_4.498935 9599..11941 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=781bp
MESCPDSVEILNVSSVSNEGPSVYEVDYSSGLRVDNQACFSLPGAATALK
LYPTSSIPETNGDKGFPIWVGLIPDHTVQCGPEPAPKVTLSILPVESLLD
SFSLPTSPMSIGKAMQTPSNFSLVVSLRNSVCPYFTESNIEFVTALIHKY
LKENSGVSPTQHGDIPRSTAMDPENILHSHFELRQLCPCTSHFPKIVSFL
PALTDEDDSEVDMNKSKEMNRAIVHQDSVDEHDDANNEEATYIPMPIKWN
GNLCPSKRIYTIGEVVSYDEKMYDAGIMKRLMLHGVVEKLFDEVRDELSH
NSSAKFSFEAKRMLLMKFGEGLEGMRGVIPFRRGSKCGGQNITEDFVMLF
EVYHILHQLSNNLKKRVEDKAKWEEILNAEIMSVESATLHVFALQTSSDL
DVCTYTASLRTRELLVGNCDSFVPLGRRDPEKIPDEENNTVPSPKPAKSD
HANADDTNQGDENEDDTEDDKSKKSIPSPGASPSAGSRDSEREAFQPGSQ
DAAQTVSPSATPSPIFPTVTPSASFVASPTLSSSVKPKETMESSPLSSPS
PSSTQVTPSISVTPSPSSSPASSSPNSTETDDSESACFPGATKVILEDRS
LISMMELRVGDYIVDGSGELSRVLAFAHANPEVENFFVLIKFPGGELPIS
AQHYLPINGKLATAKSVKPGDFINISEPHQSGIEFSQPAQVSGVERISLM
GLYNPQTASGSIAVVWKGSAVVASTYTKAVDPAVAHLIMWPLRGLDRIAG
IVIPLFANVLRDGSIFWKRLLPEGSTKLQL*
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spliced messenger RNA

>Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2343bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGTTGTCCGGATTCGGTTGAGATCCTAAATGTGTCTTCAGTATC
TAACGAAGGTCCCAGCGTTTATGAAGTTGACTACAGTTCAGGATTGAGAG
TTGATAACCAAGCATGTTTTTCTCTACCGGGTGCCGCAACGGCTCTGAAG
CTTTATCCTACTTCAAGCATTCCCGAGACGAATGGCGATAAGGGTTTTCC
AATTTGGGTCGGGTTGATACCAGATCACACGGTACAGTGTGGTCCAGAAC
CTGCTCCCAAAGTTACCCTGTCCATATTACCAGTCGAGAGCTTGCTGGAC
AGCTTTTCGTTGCCCACATCACCAATGAGTATTGGAAAAGCAATGCAAAC
GCCTTCTAACTTCTCGCTTGTTGTGAGCCTGCGTAACAGCGTATGCCCCT
ACTTCACAGAGAGCAACATCGAATTCGTTACCGCGCTAATTCACAAGTAC
TTGAAAGAGAATTCTGGTGTGAGCCCAACACAGCACGGAGATATCCCTCG
GTCCACGGCGATGGATCCGGAGAACATTTTGCACTCACATTTCGAGCTAA
GGCAGCTGTGTCCTTGTACTTCACACTTTCCGAAAATAGTGTCCTTTCTC
CCAGCATTGACGGATGAAGATGATTCTGAAGTCGATATGAACAAAAGCAA
GGAGATGAACCGCGCTATCGTACATCAGGACTCCGTGGACGAACATGATG
ATGCAAATAATGAGGAAGCAACTTATATCCCGATGCCTATTAAATGGAAC
GGTAATCTTTGTCCATCGAAGAGGATATATACCATCGGAGAGGTCGTCTC
TTACGACGAAAAGATGTACGACGCAGGAATCATGAAACGGCTTATGCTAC
ATGGCGTTGTGGAGAAGCTTTTCGACGAGGTTAGAGATGAGCTCTCCCAT
AACTCTTCAGCCAAGTTTTCCTTCGAAGCAAAACGTATGTTGCTAATGAA
GTTTGGAGAAGGGCTTGAAGGGATGAGAGGAGTTATCCCCTTTCGTCGTG
GTTCGAAATGCGGCGGGCAGAACATCACAGAAGACTTTGTTATGTTGTTC
GAAGTCTATCACATTCTTCATCAACTCTCCAACAACCTTAAGAAGCGTGT
CGAAGACAAAGCCAAATGGGAAGAAATCCTTAACGCTGAAATAATGTCGG
TGGAATCAGCCACTCTACATGTATTCGCACTGCAGACGTCTAGTGATCTT
GATGTGTGTACATACACGGCATCACTACGAACAAGAGAGCTTCTTGTGGG
CAACTGTGACTCGTTTGTACCGCTAGGCAGAAGAGATCCTGAAAAGATAC
CTGATGAGGAGAACAATACGGTTCCTTCGCCAAAACCCGCCAAAAGCGAT
CATGCTAATGCCGATGACACAAACCAAGGAGACGAAAACGAAGATGACAC
GGAAGACGACAAGAGTAAGAAATCAATACCCTCTCCTGGGGCCTCCCCAT
CCGCCGGAAGCAGAGACTCCGAGCGTGAAGCCTTTCAGCCTGGTAGCCAA
GATGCAGCTCAAACAGTTTCGCCATCCGCAACACCAAGTCCAATCTTCCC
GACTGTTACTCCTTCGGCGTCCTTTGTTGCTTCACCGACCCTTTCATCGA
GCGTCAAACCGAAAGAGACAATGGAGTCTTCGCCTCTAAGTTCCCCGAGC
CCCAGCTCGACTCAAGTGACCCCGTCCATCAGTGTTACACCCTCACCAAG
TTCCTCCCCAGCATCGTCCTCTCCAAATTCCACTGAAACTGATGACTCTG
AATCTGCGTGCTTTCCGGGGGCTACAAAAGTTATTCTCGAAGATAGATCT
CTGATCTCTATGATGGAACTTCGCGTTGGCGACTACATTGTCGATGGAAG
TGGTGAACTTTCGCGGGTATTGGCCTTTGCTCACGCTAATCCCGAAGTGG
AAAATTTCTTCGTTCTTATTAAGTTCCCGGGCGGAGAACTTCCAATATCT
GCCCAACACTATTTGCCAATCAATGGTAAACTCGCCACTGCCAAAAGTGT
CAAGCCTGGGGATTTTATCAACATTTCCGAACCACACCAGTCTGGAATCG
AATTCAGTCAGCCAGCTCAAGTCAGTGGTGTCGAGCGAATCTCTTTGATG
GGTTTGTACAATCCGCAAACAGCCAGTGGTTCAATCGCAGTTGTTTGGAA
GGGAAGTGCGGTGGTAGCTAGCACTTACACGAAAGCAGTAGATCCTGCTG
TTGCGCACTTGATAATGTGGCCTCTGCGAGGGCTTGATCGCATCGCTGGA
ATTGTCATACCACTTTTCGCGAATGTATTGCGAGACGGAAGCATCTTCTG
GAAACGACTCCTTCCCGAGGGTAGCACAAAGCTTCAATTATAG
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protein sequence of Gcaud7244.t1

>Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=781bp
MESCPDSVEILNVSSVSNEGPSVYEVDYSSGLRVDNQACFSLPGAATALK
LYPTSSIPETNGDKGFPIWVGLIPDHTVQCGPEPAPKVTLSILPVESLLD
SFSLPTSPMSIGKAMQTPSNFSLVVSLRNSVCPYFTESNIEFVTALIHKY
LKENSGVSPTQHGDIPRSTAMDPENILHSHFELRQLCPCTSHFPKIVSFL
PALTDEDDSEVDMNKSKEMNRAIVHQDSVDEHDDANNEEATYIPMPIKWN
GNLCPSKRIYTIGEVVSYDEKMYDAGIMKRLMLHGVVEKLFDEVRDELSH
NSSAKFSFEAKRMLLMKFGEGLEGMRGVIPFRRGSKCGGQNITEDFVMLF
EVYHILHQLSNNLKKRVEDKAKWEEILNAEIMSVESATLHVFALQTSSDL
DVCTYTASLRTRELLVGNCDSFVPLGRRDPEKIPDEENNTVPSPKPAKSD
HANADDTNQGDENEDDTEDDKSKKSIPSPGASPSAGSRDSEREAFQPGSQ
DAAQTVSPSATPSPIFPTVTPSASFVASPTLSSSVKPKETMESSPLSSPS
PSSTQVTPSISVTPSPSSSPASSSPNSTETDDSESACFPGATKVILEDRS
LISMMELRVGDYIVDGSGELSRVLAFAHANPEVENFFVLIKFPGGELPIS
AQHYLPINGKLATAKSVKPGDFINISEPHQSGIEFSQPAQVSGVERISLM
GLYNPQTASGSIAVVWKGSAVVASTYTKAVDPAVAHLIMWPLRGLDRIAG
IVIPLFANVLRDGSIFWKRLLPEGSTKLQL*
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mRNA from alignment at NODE_86_length_54060_cov_4.498935:9599..11941-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2343bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- (Gracilaria caudata M_176_S67 male)
ATGGAAAGTTGTCCGGATTCGGTTGAGATCCTAAATGTGTCTTCAGTATC TAACGAAGGTCCCAGCGTTTATGAAGTTGACTACAGTTCAGGATTGAGAG TTGATAACCAAGCATGTTTTTCTCTACCGGGTGCCGCAACGGCTCTGAAG CTTTATCCTACTTCAAGCATTCCCGAGACGAATGGCGATAAGGGTTTTCC AATTTGGGTCGGGTTGATACCAGATCACACGGTACAGTGTGGTCCAGAAC CTGCTCCCAAAGTTACCCTGTCCATATTACCAGTCGAGAGCTTGCTGGAC AGCTTTTCGTTGCCCACATCACCAATGAGTATTGGAAAAGCAATGCAAAC GCCTTCTAACTTCTCGCTTGTTGTGAGCCTGCGTAACAGCGTATGCCCCT ACTTCACAGAGAGCAACATCGAATTCGTTACCGCGCTAATTCACAAGTAC TTGAAAGAGAATTCTGGTGTGAGCCCAACACAGCACGGAGATATCCCTCG GTCCACGGCGATGGATCCGGAGAACATTTTGCACTCACATTTCGAGCTAA GGCAGCTGTGTCCTTGTACTTCACACTTTCCGAAAATAGTGTCCTTTCTC CCAGCATTGACGGATGAAGATGATTCTGAAGTCGATATGAACAAAAGCAA GGAGATGAACCGCGCTATCGTACATCAGGACTCCGTGGACGAACATGATG ATGCAAATAATGAGGAAGCAACTTATATCCCGATGCCTATTAAATGGAAC GGTAATCTTTGTCCATCGAAGAGGATATATACCATCGGAGAGGTCGTCTC TTACGACGAAAAGATGTACGACGCAGGAATCATGAAACGGCTTATGCTAC ATGGCGTTGTGGAGAAGCTTTTCGACGAGGTTAGAGATGAGCTCTCCCAT AACTCTTCAGCCAAGTTTTCCTTCGAAGCAAAACGTATGTTGCTAATGAA GTTTGGAGAAGGGCTTGAAGGGATGAGAGGAGTTATCCCCTTTCGTCGTG GTTCGAAATGCGGCGGGCAGAACATCACAGAAGACTTTGTTATGTTGTTC GAAGTCTATCACATTCTTCATCAACTCTCCAACAACCTTAAGAAGCGTGT CGAAGACAAAGCCAAATGGGAAGAAATCCTTAACGCTGAAATAATGTCGG TGGAATCAGCCACTCTACATGTATTCGCACTGCAGACGTCTAGTGATCTT GATGTGTGTACATACACGGCATCACTACGAACAAGAGAGCTTCTTGTGGG CAACTGTGACTCGTTTGTACCGCTAGGCAGAAGAGATCCTGAAAAGATAC CTGATGAGGAGAACAATACGGTTCCTTCGCCAAAACCCGCCAAAAGCGAT CATGCTAATGCCGATGACACAAACCAAGGAGACGAAAACGAAGATGACAC GGAAGACGACAAGAGTAAGAAATCAATACCCTCTCCTGGGGCCTCCCCAT CCGCCGGAAGCAGAGACTCCGAGCGTGAAGCCTTTCAGCCTGGTAGCCAA GATGCAGCTCAAACAGTTTCGCCATCCGCAACACCAAGTCCAATCTTCCC GACTGTTACTCCTTCGGCGTCCTTTGTTGCTTCACCGACCCTTTCATCGA GCGTCAAACCGAAAGAGACAATGGAGTCTTCGCCTCTAAGTTCCCCGAGC CCCAGCTCGACTCAAGTGACCCCGTCCATCAGTGTTACACCCTCACCAAG TTCCTCCCCAGCATCGTCCTCTCCAAATTCCACTGAAACTGATGACTCTG AATCTGCGTGCTTTCCGGGGGCTACAAAAGTTATTCTCGAAGATAGATCT CTGATCTCTATGATGGAACTTCGCGTTGGCGACTACATTGTCGATGGAAG TGGTGAACTTTCGCGGGTATTGGCCTTTGCTCACGCTAATCCCGAAGTGG AAAATTTCTTCGTTCTTATTAAGTTCCCGGGCGGAGAACTTCCAATATCT GCCCAACACTATTTGCCAATCAATGGTAAACTCGCCACTGCCAAAAGTGT CAAGCCTGGGGATTTTATCAACATTTCCGAACCACACCAGTCTGGAATCG AATTCAGTCAGCCAGCTCAAGTCAGTGGTGTCGAGCGAATCTCTTTGATG GGTTTGTACAATCCGCAAACAGCCAGTGGTTCAATCGCAGTTGTTTGGAA GGGAAGTGCGGTGGTAGCTAGCACTTACACGAAAGCAGTAGATCCTGCTG TTGCGCACTTGATAATGTGGCCTCTGCGAGGGCTTGATCGCATCGCTGGA ATTGTCATACCACTTTTCGCGAATGTATTGCGAGACGGAAGCATCTTCTG GAAACGACTCCTTCCCGAGGGTAGCACAAAGCTTCAATTATAG
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Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:9599..11941-

>Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2343bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- (Gracilaria caudata M_176_S67 male)
ATGGAAAGTTGTCCGGATTCGGTTGAGATCCTAAATGTGTCTTCAGTATC
TAACGAAGGTCCCAGCGTTTATGAAGTTGACTACAGTTCAGGATTGAGAG
TTGATAACCAAGCATGTTTTTCTCTACCGGGTGCCGCAACGGCTCTGAAG
CTTTATCCTACTTCAAGCATTCCCGAGACGAATGGCGATAAGGGTTTTCC
AATTTGGGTCGGGTTGATACCAGATCACACGGTACAGTGTGGTCCAGAAC
CTGCTCCCAAAGTTACCCTGTCCATATTACCAGTCGAGAGCTTGCTGGAC
AGCTTTTCGTTGCCCACATCACCAATGAGTATTGGAAAAGCAATGCAAAC
GCCTTCTAACTTCTCGCTTGTTGTGAGCCTGCGTAACAGCGTATGCCCCT
ACTTCACAGAGAGCAACATCGAATTCGTTACCGCGCTAATTCACAAGTAC
TTGAAAGAGAATTCTGGTGTGAGCCCAACACAGCACGGAGATATCCCTCG
GTCCACGGCGATGGATCCGGAGAACATTTTGCACTCACATTTCGAGCTAA
GGCAGCTGTGTCCTTGTACTTCACACTTTCCGAAAATAGTGTCCTTTCTC
CCAGCATTGACGGATGAAGATGATTCTGAAGTCGATATGAACAAAAGCAA
GGAGATGAACCGCGCTATCGTACATCAGGACTCCGTGGACGAACATGATG
ATGCAAATAATGAGGAAGCAACTTATATCCCGATGCCTATTAAATGGAAC
GGTAATCTTTGTCCATCGAAGAGGATATATACCATCGGAGAGGTCGTCTC
TTACGACGAAAAGATGTACGACGCAGGAATCATGAAACGGCTTATGCTAC
ATGGCGTTGTGGAGAAGCTTTTCGACGAGGTTAGAGATGAGCTCTCCCAT
AACTCTTCAGCCAAGTTTTCCTTCGAAGCAAAACGTATGTTGCTAATGAA
GTTTGGAGAAGGGCTTGAAGGGATGAGAGGAGTTATCCCCTTTCGTCGTG
GTTCGAAATGCGGCGGGCAGAACATCACAGAAGACTTTGTTATGTTGTTC
GAAGTCTATCACATTCTTCATCAACTCTCCAACAACCTTAAGAAGCGTGT
CGAAGACAAAGCCAAATGGGAAGAAATCCTTAACGCTGAAATAATGTCGG
TGGAATCAGCCACTCTACATGTATTCGCACTGCAGACGTCTAGTGATCTT
GATGTGTGTACATACACGGCATCACTACGAACAAGAGAGCTTCTTGTGGG
CAACTGTGACTCGTTTGTACCGCTAGGCAGAAGAGATCCTGAAAAGATAC
CTGATGAGGAGAACAATACGGTTCCTTCGCCAAAACCCGCCAAAAGCGAT
CATGCTAATGCCGATGACACAAACCAAGGAGACGAAAACGAAGATGACAC
GGAAGACGACAAGAGTAAGAAATCAATACCCTCTCCTGGGGCCTCCCCAT
CCGCCGGAAGCAGAGACTCCGAGCGTGAAGCCTTTCAGCCTGGTAGCCAA
GATGCAGCTCAAACAGTTTCGCCATCCGCAACACCAAGTCCAATCTTCCC
GACTGTTACTCCTTCGGCGTCCTTTGTTGCTTCACCGACCCTTTCATCGA
GCGTCAAACCGAAAGAGACAATGGAGTCTTCGCCTCTAAGTTCCCCGAGC
CCCAGCTCGACTCAAGTGACCCCGTCCATCAGTGTTACACCCTCACCAAG
TTCCTCCCCAGCATCGTCCTCTCCAAATTCCACTGAAACTGATGACTCTG
AATCTGCGTGCTTTCCGGGGGCTACAAAAGTTATTCTCGAAGATAGATCT
CTGATCTCTATGATGGAACTTCGCGTTGGCGACTACATTGTCGATGGAAG
TGGTGAACTTTCGCGGGTATTGGCCTTTGCTCACGCTAATCCCGAAGTGG
AAAATTTCTTCGTTCTTATTAAGTTCCCGGGCGGAGAACTTCCAATATCT
GCCCAACACTATTTGCCAATCAATGGTAAACTCGCCACTGCCAAAAGTGT
CAAGCCTGGGGATTTTATCAACATTTCCGAACCACACCAGTCTGGAATCG
AATTCAGTCAGCCAGCTCAAGTCAGTGGTGTCGAGCGAATCTCTTTGATG
GGTTTGTACAATCCGCAAACAGCCAGTGGTTCAATCGCAGTTGTTTGGAA
GGGAAGTGCGGTGGTAGCTAGCACTTACACGAAAGCAGTAGATCCTGCTG
TTGCGCACTTGATAATGTGGCCTCTGCGAGGGCTTGATCGCATCGCTGGA
ATTGTCATACCACTTTTCGCGAATGTATTGCGAGACGGAAGCATCTTCTG
GAAACGACTCCTTCCCGAGGGTAGCACAAAGCTTCAATTATAG
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