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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 88036.EFJ27773 |
| PFAMs | Ground-like,Hint,Kelch_4 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K06224,ko:K11990,ko:K16669 |
| KEGG Pathway | ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392 |
| KEGG Module | M00678 |
| GOs | GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564 |
| Evalue | 3.72e-09 |
| EggNOG OGs | KOG3638@1|root,KOG3638@2759|Eukaryota |
| Description | intein-mediated protein splicing |
| COG category | M |
| BRITE | ko00000,ko00001,ko00002,ko00536,ko01002,ko04516 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud7244.t1.stop1 | Gcaud7244.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_86_length_54060_cov_4.498935 9599..9601 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud7244.t1.start1 | Gcaud7244.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_86_length_54060_cov_4.498935 11939..11941 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=781bp MESCPDSVEILNVSSVSNEGPSVYEVDYSSGLRVDNQACFSLPGAATALK LYPTSSIPETNGDKGFPIWVGLIPDHTVQCGPEPAPKVTLSILPVESLLD SFSLPTSPMSIGKAMQTPSNFSLVVSLRNSVCPYFTESNIEFVTALIHKY LKENSGVSPTQHGDIPRSTAMDPENILHSHFELRQLCPCTSHFPKIVSFL PALTDEDDSEVDMNKSKEMNRAIVHQDSVDEHDDANNEEATYIPMPIKWN GNLCPSKRIYTIGEVVSYDEKMYDAGIMKRLMLHGVVEKLFDEVRDELSH NSSAKFSFEAKRMLLMKFGEGLEGMRGVIPFRRGSKCGGQNITEDFVMLF EVYHILHQLSNNLKKRVEDKAKWEEILNAEIMSVESATLHVFALQTSSDL DVCTYTASLRTRELLVGNCDSFVPLGRRDPEKIPDEENNTVPSPKPAKSD HANADDTNQGDENEDDTEDDKSKKSIPSPGASPSAGSRDSEREAFQPGSQ DAAQTVSPSATPSPIFPTVTPSASFVASPTLSSSVKPKETMESSPLSSPS PSSTQVTPSISVTPSPSSSPASSSPNSTETDDSESACFPGATKVILEDRS LISMMELRVGDYIVDGSGELSRVLAFAHANPEVENFFVLIKFPGGELPIS AQHYLPINGKLATAKSVKPGDFINISEPHQSGIEFSQPAQVSGVERISLM GLYNPQTASGSIAVVWKGSAVVASTYTKAVDPAVAHLIMWPLRGLDRIAG IVIPLFANVLRDGSIFWKRLLPEGSTKLQL* back to topspliced messenger RNA >Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2343bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAAGTTGTCCGGATTCGGTTGAGATCCTAAATGTGTCTTCAGTATC TAACGAAGGTCCCAGCGTTTATGAAGTTGACTACAGTTCAGGATTGAGAG TTGATAACCAAGCATGTTTTTCTCTACCGGGTGCCGCAACGGCTCTGAAG CTTTATCCTACTTCAAGCATTCCCGAGACGAATGGCGATAAGGGTTTTCC AATTTGGGTCGGGTTGATACCAGATCACACGGTACAGTGTGGTCCAGAAC CTGCTCCCAAAGTTACCCTGTCCATATTACCAGTCGAGAGCTTGCTGGAC AGCTTTTCGTTGCCCACATCACCAATGAGTATTGGAAAAGCAATGCAAAC GCCTTCTAACTTCTCGCTTGTTGTGAGCCTGCGTAACAGCGTATGCCCCT ACTTCACAGAGAGCAACATCGAATTCGTTACCGCGCTAATTCACAAGTAC TTGAAAGAGAATTCTGGTGTGAGCCCAACACAGCACGGAGATATCCCTCG GTCCACGGCGATGGATCCGGAGAACATTTTGCACTCACATTTCGAGCTAA GGCAGCTGTGTCCTTGTACTTCACACTTTCCGAAAATAGTGTCCTTTCTC CCAGCATTGACGGATGAAGATGATTCTGAAGTCGATATGAACAAAAGCAA GGAGATGAACCGCGCTATCGTACATCAGGACTCCGTGGACGAACATGATG ATGCAAATAATGAGGAAGCAACTTATATCCCGATGCCTATTAAATGGAAC GGTAATCTTTGTCCATCGAAGAGGATATATACCATCGGAGAGGTCGTCTC TTACGACGAAAAGATGTACGACGCAGGAATCATGAAACGGCTTATGCTAC ATGGCGTTGTGGAGAAGCTTTTCGACGAGGTTAGAGATGAGCTCTCCCAT AACTCTTCAGCCAAGTTTTCCTTCGAAGCAAAACGTATGTTGCTAATGAA GTTTGGAGAAGGGCTTGAAGGGATGAGAGGAGTTATCCCCTTTCGTCGTG GTTCGAAATGCGGCGGGCAGAACATCACAGAAGACTTTGTTATGTTGTTC GAAGTCTATCACATTCTTCATCAACTCTCCAACAACCTTAAGAAGCGTGT CGAAGACAAAGCCAAATGGGAAGAAATCCTTAACGCTGAAATAATGTCGG TGGAATCAGCCACTCTACATGTATTCGCACTGCAGACGTCTAGTGATCTT GATGTGTGTACATACACGGCATCACTACGAACAAGAGAGCTTCTTGTGGG CAACTGTGACTCGTTTGTACCGCTAGGCAGAAGAGATCCTGAAAAGATAC CTGATGAGGAGAACAATACGGTTCCTTCGCCAAAACCCGCCAAAAGCGAT CATGCTAATGCCGATGACACAAACCAAGGAGACGAAAACGAAGATGACAC GGAAGACGACAAGAGTAAGAAATCAATACCCTCTCCTGGGGCCTCCCCAT CCGCCGGAAGCAGAGACTCCGAGCGTGAAGCCTTTCAGCCTGGTAGCCAA GATGCAGCTCAAACAGTTTCGCCATCCGCAACACCAAGTCCAATCTTCCC GACTGTTACTCCTTCGGCGTCCTTTGTTGCTTCACCGACCCTTTCATCGA GCGTCAAACCGAAAGAGACAATGGAGTCTTCGCCTCTAAGTTCCCCGAGC CCCAGCTCGACTCAAGTGACCCCGTCCATCAGTGTTACACCCTCACCAAG TTCCTCCCCAGCATCGTCCTCTCCAAATTCCACTGAAACTGATGACTCTG AATCTGCGTGCTTTCCGGGGGCTACAAAAGTTATTCTCGAAGATAGATCT CTGATCTCTATGATGGAACTTCGCGTTGGCGACTACATTGTCGATGGAAG TGGTGAACTTTCGCGGGTATTGGCCTTTGCTCACGCTAATCCCGAAGTGG AAAATTTCTTCGTTCTTATTAAGTTCCCGGGCGGAGAACTTCCAATATCT GCCCAACACTATTTGCCAATCAATGGTAAACTCGCCACTGCCAAAAGTGT CAAGCCTGGGGATTTTATCAACATTTCCGAACCACACCAGTCTGGAATCG AATTCAGTCAGCCAGCTCAAGTCAGTGGTGTCGAGCGAATCTCTTTGATG GGTTTGTACAATCCGCAAACAGCCAGTGGTTCAATCGCAGTTGTTTGGAA GGGAAGTGCGGTGGTAGCTAGCACTTACACGAAAGCAGTAGATCCTGCTG TTGCGCACTTGATAATGTGGCCTCTGCGAGGGCTTGATCGCATCGCTGGA ATTGTCATACCACTTTTCGCGAATGTATTGCGAGACGGAAGCATCTTCTG GAAACGACTCCTTCCCGAGGGTAGCACAAAGCTTCAATTATAG back to topprotein sequence of Gcaud7244.t1 >Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=781bp
MESCPDSVEILNVSSVSNEGPSVYEVDYSSGLRVDNQACFSLPGAATALK LYPTSSIPETNGDKGFPIWVGLIPDHTVQCGPEPAPKVTLSILPVESLLD SFSLPTSPMSIGKAMQTPSNFSLVVSLRNSVCPYFTESNIEFVTALIHKY LKENSGVSPTQHGDIPRSTAMDPENILHSHFELRQLCPCTSHFPKIVSFL PALTDEDDSEVDMNKSKEMNRAIVHQDSVDEHDDANNEEATYIPMPIKWN GNLCPSKRIYTIGEVVSYDEKMYDAGIMKRLMLHGVVEKLFDEVRDELSH NSSAKFSFEAKRMLLMKFGEGLEGMRGVIPFRRGSKCGGQNITEDFVMLF EVYHILHQLSNNLKKRVEDKAKWEEILNAEIMSVESATLHVFALQTSSDL DVCTYTASLRTRELLVGNCDSFVPLGRRDPEKIPDEENNTVPSPKPAKSD HANADDTNQGDENEDDTEDDKSKKSIPSPGASPSAGSRDSEREAFQPGSQ DAAQTVSPSATPSPIFPTVTPSASFVASPTLSSSVKPKETMESSPLSSPS PSSTQVTPSISVTPSPSSSPASSSPNSTETDDSESACFPGATKVILEDRS LISMMELRVGDYIVDGSGELSRVLAFAHANPEVENFFVLIKFPGGELPIS AQHYLPINGKLATAKSVKPGDFINISEPHQSGIEFSQPAQVSGVERISLM GLYNPQTASGSIAVVWKGSAVVASTYTKAVDPAVAHLIMWPLRGLDRIAG IVIPLFANVLRDGSIFWKRLLPEGSTKLQL* back to topmRNA from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2343bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- (Gracilaria caudata M_176_S67 male) ATGGAAAGTTGTCCGGATTCGGTTGAGATCCTAAATGTGTCTTCAGTATC
TAACGAAGGTCCCAGCGTTTATGAAGTTGACTACAGTTCAGGATTGAGAG
TTGATAACCAAGCATGTTTTTCTCTACCGGGTGCCGCAACGGCTCTGAAG
CTTTATCCTACTTCAAGCATTCCCGAGACGAATGGCGATAAGGGTTTTCC
AATTTGGGTCGGGTTGATACCAGATCACACGGTACAGTGTGGTCCAGAAC
CTGCTCCCAAAGTTACCCTGTCCATATTACCAGTCGAGAGCTTGCTGGAC
AGCTTTTCGTTGCCCACATCACCAATGAGTATTGGAAAAGCAATGCAAAC
GCCTTCTAACTTCTCGCTTGTTGTGAGCCTGCGTAACAGCGTATGCCCCT
ACTTCACAGAGAGCAACATCGAATTCGTTACCGCGCTAATTCACAAGTAC
TTGAAAGAGAATTCTGGTGTGAGCCCAACACAGCACGGAGATATCCCTCG
GTCCACGGCGATGGATCCGGAGAACATTTTGCACTCACATTTCGAGCTAA
GGCAGCTGTGTCCTTGTACTTCACACTTTCCGAAAATAGTGTCCTTTCTC
CCAGCATTGACGGATGAAGATGATTCTGAAGTCGATATGAACAAAAGCAA
GGAGATGAACCGCGCTATCGTACATCAGGACTCCGTGGACGAACATGATG
ATGCAAATAATGAGGAAGCAACTTATATCCCGATGCCTATTAAATGGAAC
GGTAATCTTTGTCCATCGAAGAGGATATATACCATCGGAGAGGTCGTCTC
TTACGACGAAAAGATGTACGACGCAGGAATCATGAAACGGCTTATGCTAC
ATGGCGTTGTGGAGAAGCTTTTCGACGAGGTTAGAGATGAGCTCTCCCAT
AACTCTTCAGCCAAGTTTTCCTTCGAAGCAAAACGTATGTTGCTAATGAA
GTTTGGAGAAGGGCTTGAAGGGATGAGAGGAGTTATCCCCTTTCGTCGTG
GTTCGAAATGCGGCGGGCAGAACATCACAGAAGACTTTGTTATGTTGTTC
GAAGTCTATCACATTCTTCATCAACTCTCCAACAACCTTAAGAAGCGTGT
CGAAGACAAAGCCAAATGGGAAGAAATCCTTAACGCTGAAATAATGTCGG
TGGAATCAGCCACTCTACATGTATTCGCACTGCAGACGTCTAGTGATCTT
GATGTGTGTACATACACGGCATCACTACGAACAAGAGAGCTTCTTGTGGG
CAACTGTGACTCGTTTGTACCGCTAGGCAGAAGAGATCCTGAAAAGATAC
CTGATGAGGAGAACAATACGGTTCCTTCGCCAAAACCCGCCAAAAGCGAT
CATGCTAATGCCGATGACACAAACCAAGGAGACGAAAACGAAGATGACAC
GGAAGACGACAAGAGTAAGAAATCAATACCCTCTCCTGGGGCCTCCCCAT
CCGCCGGAAGCAGAGACTCCGAGCGTGAAGCCTTTCAGCCTGGTAGCCAA
GATGCAGCTCAAACAGTTTCGCCATCCGCAACACCAAGTCCAATCTTCCC
GACTGTTACTCCTTCGGCGTCCTTTGTTGCTTCACCGACCCTTTCATCGA
GCGTCAAACCGAAAGAGACAATGGAGTCTTCGCCTCTAAGTTCCCCGAGC
CCCAGCTCGACTCAAGTGACCCCGTCCATCAGTGTTACACCCTCACCAAG
TTCCTCCCCAGCATCGTCCTCTCCAAATTCCACTGAAACTGATGACTCTG
AATCTGCGTGCTTTCCGGGGGCTACAAAAGTTATTCTCGAAGATAGATCT
CTGATCTCTATGATGGAACTTCGCGTTGGCGACTACATTGTCGATGGAAG
TGGTGAACTTTCGCGGGTATTGGCCTTTGCTCACGCTAATCCCGAAGTGG
AAAATTTCTTCGTTCTTATTAAGTTCCCGGGCGGAGAACTTCCAATATCT
GCCCAACACTATTTGCCAATCAATGGTAAACTCGCCACTGCCAAAAGTGT
CAAGCCTGGGGATTTTATCAACATTTCCGAACCACACCAGTCTGGAATCG
AATTCAGTCAGCCAGCTCAAGTCAGTGGTGTCGAGCGAATCTCTTTGATG
GGTTTGTACAATCCGCAAACAGCCAGTGGTTCAATCGCAGTTGTTTGGAA
GGGAAGTGCGGTGGTAGCTAGCACTTACACGAAAGCAGTAGATCCTGCTG
TTGCGCACTTGATAATGTGGCCTCTGCGAGGGCTTGATCGCATCGCTGGA
ATTGTCATACCACTTTTCGCGAATGTATTGCGAGACGGAAGCATCTTCTG
GAAACGACTCCTTCCCGAGGGTAGCACAAAGCTTCAATTATAG back to topCoding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- >Gcaud7244.t1 ID=Gcaud7244.t1|Name=Gcaud7244.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2343bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:9599..11941- (Gracilaria caudata M_176_S67 male) ATGGAAAGTTGTCCGGATTCGGTTGAGATCCTAAATGTGTCTTCAGTATC TAACGAAGGTCCCAGCGTTTATGAAGTTGACTACAGTTCAGGATTGAGAG TTGATAACCAAGCATGTTTTTCTCTACCGGGTGCCGCAACGGCTCTGAAG CTTTATCCTACTTCAAGCATTCCCGAGACGAATGGCGATAAGGGTTTTCC AATTTGGGTCGGGTTGATACCAGATCACACGGTACAGTGTGGTCCAGAAC CTGCTCCCAAAGTTACCCTGTCCATATTACCAGTCGAGAGCTTGCTGGAC AGCTTTTCGTTGCCCACATCACCAATGAGTATTGGAAAAGCAATGCAAAC GCCTTCTAACTTCTCGCTTGTTGTGAGCCTGCGTAACAGCGTATGCCCCT ACTTCACAGAGAGCAACATCGAATTCGTTACCGCGCTAATTCACAAGTAC TTGAAAGAGAATTCTGGTGTGAGCCCAACACAGCACGGAGATATCCCTCG GTCCACGGCGATGGATCCGGAGAACATTTTGCACTCACATTTCGAGCTAA GGCAGCTGTGTCCTTGTACTTCACACTTTCCGAAAATAGTGTCCTTTCTC CCAGCATTGACGGATGAAGATGATTCTGAAGTCGATATGAACAAAAGCAA GGAGATGAACCGCGCTATCGTACATCAGGACTCCGTGGACGAACATGATG ATGCAAATAATGAGGAAGCAACTTATATCCCGATGCCTATTAAATGGAAC GGTAATCTTTGTCCATCGAAGAGGATATATACCATCGGAGAGGTCGTCTC TTACGACGAAAAGATGTACGACGCAGGAATCATGAAACGGCTTATGCTAC ATGGCGTTGTGGAGAAGCTTTTCGACGAGGTTAGAGATGAGCTCTCCCAT AACTCTTCAGCCAAGTTTTCCTTCGAAGCAAAACGTATGTTGCTAATGAA GTTTGGAGAAGGGCTTGAAGGGATGAGAGGAGTTATCCCCTTTCGTCGTG GTTCGAAATGCGGCGGGCAGAACATCACAGAAGACTTTGTTATGTTGTTC GAAGTCTATCACATTCTTCATCAACTCTCCAACAACCTTAAGAAGCGTGT CGAAGACAAAGCCAAATGGGAAGAAATCCTTAACGCTGAAATAATGTCGG TGGAATCAGCCACTCTACATGTATTCGCACTGCAGACGTCTAGTGATCTT GATGTGTGTACATACACGGCATCACTACGAACAAGAGAGCTTCTTGTGGG CAACTGTGACTCGTTTGTACCGCTAGGCAGAAGAGATCCTGAAAAGATAC CTGATGAGGAGAACAATACGGTTCCTTCGCCAAAACCCGCCAAAAGCGAT CATGCTAATGCCGATGACACAAACCAAGGAGACGAAAACGAAGATGACAC GGAAGACGACAAGAGTAAGAAATCAATACCCTCTCCTGGGGCCTCCCCAT CCGCCGGAAGCAGAGACTCCGAGCGTGAAGCCTTTCAGCCTGGTAGCCAA GATGCAGCTCAAACAGTTTCGCCATCCGCAACACCAAGTCCAATCTTCCC GACTGTTACTCCTTCGGCGTCCTTTGTTGCTTCACCGACCCTTTCATCGA GCGTCAAACCGAAAGAGACAATGGAGTCTTCGCCTCTAAGTTCCCCGAGC CCCAGCTCGACTCAAGTGACCCCGTCCATCAGTGTTACACCCTCACCAAG TTCCTCCCCAGCATCGTCCTCTCCAAATTCCACTGAAACTGATGACTCTG AATCTGCGTGCTTTCCGGGGGCTACAAAAGTTATTCTCGAAGATAGATCT CTGATCTCTATGATGGAACTTCGCGTTGGCGACTACATTGTCGATGGAAG TGGTGAACTTTCGCGGGTATTGGCCTTTGCTCACGCTAATCCCGAAGTGG AAAATTTCTTCGTTCTTATTAAGTTCCCGGGCGGAGAACTTCCAATATCT GCCCAACACTATTTGCCAATCAATGGTAAACTCGCCACTGCCAAAAGTGT CAAGCCTGGGGATTTTATCAACATTTCCGAACCACACCAGTCTGGAATCG AATTCAGTCAGCCAGCTCAAGTCAGTGGTGTCGAGCGAATCTCTTTGATG GGTTTGTACAATCCGCAAACAGCCAGTGGTTCAATCGCAGTTGTTTGGAA GGGAAGTGCGGTGGTAGCTAGCACTTACACGAAAGCAGTAGATCCTGCTG TTGCGCACTTGATAATGTGGCCTCTGCGAGGGCTTGATCGCATCGCTGGA ATTGTCATACCACTTTTCGCGAATGTATTGCGAGACGGAAGCATCTTCTG GAAACGACTCCTTCCCGAGGGTAGCACAAAGCTTCAATTATAG back to top
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