Gcaud7243.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7243.t1
Unique Name	Gcaud7243.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_86_length_54060_cov_4.498935	contig	NODE_86_length_54060_cov_4.498935:8099..8899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9544.ENSMMUP00000001740
Preferred name	TBCC
PFAMs	TBCC,TBCC_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K21766
GOs	GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005929,GO:0006457,GO:0007021,GO:0007023,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0032391,GO:0034622,GO:0035869,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0051087,GO:0065003,GO:0071840,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120038
Evalue	4.55e-24
EggNOG OGs	KOG2512@1\|root,KOG2512@2759\|Eukaryota,39SCD@33154\|Opisthokonta,3BFCJ@33208\|Metazoa,3CY8P@33213\|Bilateria,488Z0@7711\|Chordata,48Y42@7742\|Vertebrata,3JCE8@40674\|Mammalia,35PJ7@314146\|Euarchontoglires,4MCUF@9443\|Primates,3630D@314294\|Cercopithecoidea
Description	Tubulin-specific chaperone C N-terminal domain
COG category	O
BRITE	ko00000,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7243	Gcaud7243	Gracilaria caudata M_176_S67 male	gene	NODE_86_length_54060_cov_4.498935 8099..8899 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7243.t1.start1	Gcaud7243.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_86_length_54060_cov_4.498935 8099..8101 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7243.t1.CDS1	Gcaud7243.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 8099..8899 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7243.t1.exon1	Gcaud7243.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 8099..8899 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7243.t1.stop1	Gcaud7243.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_86_length_54060_cov_4.498935 8897..8899 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7243.t1	Gcaud7243.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_86_length_54060_cov_4.498935 8099..8899 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_86_length_54060_cov_4.498935:8099..8899+
coding sequence from alignment at NODE_86_length_54060_cov_4.498935:8099..8899+

mRNA sequence

>Gcaud7243.t1 ID=Gcaud7243.t1|Name=Gcaud7243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
MPPISIAEQLEAEFSAKCELLSSLIEAVELTSLPDLRIQLEAMRELLAQG
TEWWTKYDVRRNSEKLLSLEQEVDIATRRLKPRRRFRFSQALKSPESHFH
GDATSQKTTLPVGLMGNGIVVDSSSVRNGKVELNNLDGQPVTVVGLKDVH
MFLKGSPTALRLTNLTRCDVQAVVVNGSVFMSECNDCAVSVACHQLRIHQ
SKDCSVWSCSESSPIIEGCECMRFGELQVDGRRSCWDEIKDFSWLRGDPS
PNWELLNESRVYRPSL*

spliced messenger RNA

>Gcaud7243.t1 ID=Gcaud7243.t1|Name=Gcaud7243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:8099..8899+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCGATATCCATAGCCGAACAACTGGAAGCAGAATTTTCTGCAAA
GTGCGAACTACTAAGTTCCTTGATCGAAGCAGTGGAGCTAACGTCGCTTC
CAGATCTAAGAATACAGTTAGAGGCTATGAGAGAGTTGCTCGCGCAAGGC
ACCGAGTGGTGGACGAAATACGATGTACGGCGAAATTCGGAGAAGCTACT
TTCCCTTGAACAAGAGGTGGACATCGCCACAAGACGACTTAAACCGCGTC
GGCGATTCCGGTTCAGTCAAGCTTTGAAATCTCCAGAATCGCATTTTCAT
GGCGACGCAACCTCACAGAAAACTACACTTCCTGTGGGCCTAATGGGAAA
CGGAATAGTTGTGGATTCCAGCAGCGTGCGAAACGGAAAAGTAGAGCTCA
ACAACTTGGACGGACAACCCGTGACTGTTGTGGGTTTGAAAGATGTACAT
ATGTTTCTGAAAGGGAGTCCTACTGCGTTGCGACTCACGAATCTCACGCG
CTGTGATGTGCAAGCTGTTGTTGTTAATGGTTCGGTTTTCATGTCCGAGT
GCAATGACTGTGCTGTGAGTGTCGCCTGTCATCAACTTCGCATTCACCAA
TCGAAAGATTGTTCTGTATGGTCATGCTCCGAAAGCAGTCCAATTATAGA
AGGTTGCGAGTGCATGCGCTTCGGAGAGTTGCAAGTTGACGGGCGCAGAA
GTTGTTGGGACGAGATCAAAGATTTCAGCTGGCTTCGTGGGGATCCGAGC
CCGAACTGGGAGCTGCTGAACGAATCACGGGTATACAGACCCTCTCTTTA
A

protein sequence of Gcaud7243.t1

>Gcaud7243.t1 ID=Gcaud7243.t1|Name=Gcaud7243.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MPPISIAEQLEAEFSAKCELLSSLIEAVELTSLPDLRIQLEAMRELLAQG
TEWWTKYDVRRNSEKLLSLEQEVDIATRRLKPRRRFRFSQALKSPESHFH
GDATSQKTTLPVGLMGNGIVVDSSSVRNGKVELNNLDGQPVTVVGLKDVH
MFLKGSPTALRLTNLTRCDVQAVVVNGSVFMSECNDCAVSVACHQLRIHQ
SKDCSVWSCSESSPIIEGCECMRFGELQVDGRRSCWDEIKDFSWLRGDPS
PNWELLNESRVYRPSL*

mRNA from alignment at NODE_86_length_54060_cov_4.498935:8099..8899+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7243.t1 ID=Gcaud7243.t1|Name=Gcaud7243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:8099..8899+ (Gracilaria caudata M_176_S67 male)
ATGCCACCGATATCCATAGCCGAACAACTGGAAGCAGAATTTTCTGCAAA
GTGCGAACTACTAAGTTCCTTGATCGAAGCAGTGGAGCTAACGTCGCTTC
CAGATCTAAGAATACAGTTAGAGGCTATGAGAGAGTTGCTCGCGCAAGGC
ACCGAGTGGTGGACGAAATACGATGTACGGCGAAATTCGGAGAAGCTACT
TTCCCTTGAACAAGAGGTGGACATCGCCACAAGACGACTTAAACCGCGTC
GGCGATTCCGGTTCAGTCAAGCTTTGAAATCTCCAGAATCGCATTTTCAT
GGCGACGCAACCTCACAGAAAACTACACTTCCTGTGGGCCTAATGGGAAA
CGGAATAGTTGTGGATTCCAGCAGCGTGCGAAACGGAAAAGTAGAGCTCA
ACAACTTGGACGGACAACCCGTGACTGTTGTGGGTTTGAAAGATGTACAT
ATGTTTCTGAAAGGGAGTCCTACTGCGTTGCGACTCACGAATCTCACGCG
CTGTGATGTGCAAGCTGTTGTTGTTAATGGTTCGGTTTTCATGTCCGAGT
GCAATGACTGTGCTGTGAGTGTCGCCTGTCATCAACTTCGCATTCACCAA
TCGAAAGATTGTTCTGTATGGTCATGCTCCGAAAGCAGTCCAATTATAGA
AGGTTGCGAGTGCATGCGCTTCGGAGAGTTGCAAGTTGACGGGCGCAGAA
GTTGTTGGGACGAGATCAAAGATTTCAGCTGGCTTCGTGGGGATCCGAGC
CCGAACTGGGAGCTGCTGAACGAATCACGGGTATACAGACCCTCTCTTTA
A

Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:8099..8899+

>Gcaud7243.t1 ID=Gcaud7243.t1|Name=Gcaud7243.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=801bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:8099..8899+ (Gracilaria caudata M_176_S67 male)
ATGCCACCGATATCCATAGCCGAACAACTGGAAGCAGAATTTTCTGCAAA
GTGCGAACTACTAAGTTCCTTGATCGAAGCAGTGGAGCTAACGTCGCTTC
CAGATCTAAGAATACAGTTAGAGGCTATGAGAGAGTTGCTCGCGCAAGGC
ACCGAGTGGTGGACGAAATACGATGTACGGCGAAATTCGGAGAAGCTACT
TTCCCTTGAACAAGAGGTGGACATCGCCACAAGACGACTTAAACCGCGTC
GGCGATTCCGGTTCAGTCAAGCTTTGAAATCTCCAGAATCGCATTTTCAT
GGCGACGCAACCTCACAGAAAACTACACTTCCTGTGGGCCTAATGGGAAA
CGGAATAGTTGTGGATTCCAGCAGCGTGCGAAACGGAAAAGTAGAGCTCA
ACAACTTGGACGGACAACCCGTGACTGTTGTGGGTTTGAAAGATGTACAT
ATGTTTCTGAAAGGGAGTCCTACTGCGTTGCGACTCACGAATCTCACGCG
CTGTGATGTGCAAGCTGTTGTTGTTAATGGTTCGGTTTTCATGTCCGAGT
GCAATGACTGTGCTGTGAGTGTCGCCTGTCATCAACTTCGCATTCACCAA
TCGAAAGATTGTTCTGTATGGTCATGCTCCGAAAGCAGTCCAATTATAGA
AGGTTGCGAGTGCATGCGCTTCGGAGAGTTGCAAGTTGACGGGCGCAGAA
GTTGTTGGGACGAGATCAAAGATTTCAGCTGGCTTCGTGGGGATCCGAGC
CCGAACTGGGAGCTGCTGAACGAATCACGGGTATACAGACCCTCTCTTTA
A