Gcaud7242.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7242.t1
Unique Name	Gcaud7242.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_86_length_54060_cov_4.498935	contig	NODE_86_length_54060_cov_4.498935:5743..7092 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7242	Gcaud7242	Gracilaria caudata M_176_S67 male	gene	NODE_86_length_54060_cov_4.498935 5743..7092 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7242.t1.start1	Gcaud7242.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_86_length_54060_cov_4.498935 5743..5745 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7242.t1.CDS1	Gcaud7242.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_86_length_54060_cov_4.498935 5743..7092 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7242.t1.exon1	Gcaud7242.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_86_length_54060_cov_4.498935 5743..7092 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7242.t1.stop1	Gcaud7242.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_86_length_54060_cov_4.498935 7090..7092 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7242.t1	Gcaud7242.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_86_length_54060_cov_4.498935 5743..7092 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_86_length_54060_cov_4.498935:5743..7092+
coding sequence from alignment at NODE_86_length_54060_cov_4.498935:5743..7092+

mRNA sequence

>Gcaud7242.t1 ID=Gcaud7242.t1|Name=Gcaud7242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MQKPRRPSRRLSRRLYRRPSRPLRKTPRFDDLADDEPESSSDSISSESSE
DSPPPDFAADADDEEGYESALEGTPSPKPQPKRPSRLAKPRCFLDAVRPY
VEPMSRDAIKLSQLTMAQITAGEAYRGPLVVTEADRAEEEAARTTAAMLA
RYDSDEFIDDREEVIPQVQTRPFSLKKRTRSENSNLSSSDSEPLSGESGS
ERRSELAADDSPLGNTQTEESPASHYDNDEPQATQTDSSDYESKEARSPP
KMVLRLVRGDRIASGKRSKGSDSESCDNHEEALTKYAVDESSYTPDQASK
RSIRESEAHGLSELEYQTSKQRHSMRPAPVAPSCVIDAVDSFQDGSTGIR
IQRPQRRTVRSRSGMRSSTSNRESATVAPLHTAPSQILDVIDLCDDNHED
KGRKEALRQRESQVVDLCSDDGAGEVTTQPTHPRRSLRTTRQPMRYGLP*

spliced messenger RNA

>Gcaud7242.t1 ID=Gcaud7242.t1|Name=Gcaud7242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:5743..7092+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGCCACGCCGTCCCAGTCGCCGTCTCAGTCGCCGACTCTATCG
CCGTCCCAGTCGCCCACTACGCAAAACGCCTCGTTTTGATGACCTTGCCG
ACGATGAGCCCGAGTCTTCCAGTGATTCAATCTCCTCCGAGTCTTCTGAA
GACTCTCCACCGCCCGACTTCGCCGCCGATGCGGATGACGAGGAAGGATA
CGAATCCGCCTTAGAGGGAACGCCGTCTCCAAAGCCGCAGCCGAAGCGTC
CCTCCCGTCTCGCGAAACCGCGGTGTTTTCTCGATGCGGTCAGGCCGTAC
GTAGAGCCTATGTCAAGGGATGCCATCAAGCTCAGCCAGCTGACAATGGC
ACAAATAACTGCGGGTGAGGCGTACCGCGGTCCGCTCGTCGTCACTGAAG
CAGACCGAGCTGAAGAAGAAGCAGCTCGTACTACAGCTGCCATGCTTGCG
CGCTACGATAGCGATGAATTCATCGACGATCGAGAGGAAGTGATACCTCA
GGTGCAGACACGCCCATTTTCGCTCAAGAAGCGAACCAGGTCTGAAAACA
GCAATCTTTCGAGCTCTGACTCAGAGCCCCTGTCGGGAGAGAGTGGCTCT
GAGCGCAGAAGCGAACTAGCTGCCGATGATTCACCGCTGGGTAATACCCA
AACAGAAGAGTCCCCTGCTTCACATTATGATAACGATGAACCGCAAGCAA
CTCAAACAGATTCGTCTGACTACGAGTCCAAGGAAGCTCGCTCTCCTCCG
AAAATGGTGTTGCGCCTTGTTCGAGGTGATAGGATAGCATCAGGGAAGCG
GTCAAAAGGCAGCGATAGTGAGTCTTGCGATAATCATGAAGAGGCTCTGA
CAAAATACGCCGTTGACGAGTCTAGCTACACTCCAGATCAAGCATCGAAA
CGAAGTATTCGCGAATCAGAAGCTCACGGCCTGTCGGAATTGGAATATCA
GACAAGTAAACAGCGACACTCAATGAGGCCAGCACCCGTCGCTCCCAGTT
GCGTGATTGACGCCGTTGATTCTTTTCAAGACGGTAGTACTGGTATTCGC
ATCCAACGCCCGCAAAGAAGAACTGTGCGATCGCGAAGTGGGATGAGAAG
TTCAACGAGTAATAGGGAAAGCGCAACGGTTGCTCCACTGCACACAGCTC
CTTCACAAATTTTGGACGTCATTGATCTTTGTGATGATAATCACGAAGAC
AAGGGCCGGAAGGAAGCATTACGGCAACGGGAATCCCAAGTTGTTGATTT
GTGTTCGGACGATGGTGCAGGAGAAGTCACTACACAGCCCACGCACCCAA
GACGGAGTTTGAGAACTACTAGACAGCCTATGCGGTATGGGTTACCTTGA

protein sequence of Gcaud7242.t1

>Gcaud7242.t1 ID=Gcaud7242.t1|Name=Gcaud7242.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MQKPRRPSRRLSRRLYRRPSRPLRKTPRFDDLADDEPESSSDSISSESSE
DSPPPDFAADADDEEGYESALEGTPSPKPQPKRPSRLAKPRCFLDAVRPY
VEPMSRDAIKLSQLTMAQITAGEAYRGPLVVTEADRAEEEAARTTAAMLA
RYDSDEFIDDREEVIPQVQTRPFSLKKRTRSENSNLSSSDSEPLSGESGS
ERRSELAADDSPLGNTQTEESPASHYDNDEPQATQTDSSDYESKEARSPP
KMVLRLVRGDRIASGKRSKGSDSESCDNHEEALTKYAVDESSYTPDQASK
RSIRESEAHGLSELEYQTSKQRHSMRPAPVAPSCVIDAVDSFQDGSTGIR
IQRPQRRTVRSRSGMRSSTSNRESATVAPLHTAPSQILDVIDLCDDNHED
KGRKEALRQRESQVVDLCSDDGAGEVTTQPTHPRRSLRTTRQPMRYGLP*

mRNA from alignment at NODE_86_length_54060_cov_4.498935:5743..7092+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7242.t1 ID=Gcaud7242.t1|Name=Gcaud7242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:5743..7092+ (Gracilaria caudata M_176_S67 male)
ATGCAGAAGCCACGCCGTCCCAGTCGCCGTCTCAGTCGCCGACTCTATCG
CCGTCCCAGTCGCCCACTACGCAAAACGCCTCGTTTTGATGACCTTGCCG
ACGATGAGCCCGAGTCTTCCAGTGATTCAATCTCCTCCGAGTCTTCTGAA
GACTCTCCACCGCCCGACTTCGCCGCCGATGCGGATGACGAGGAAGGATA
CGAATCCGCCTTAGAGGGAACGCCGTCTCCAAAGCCGCAGCCGAAGCGTC
CCTCCCGTCTCGCGAAACCGCGGTGTTTTCTCGATGCGGTCAGGCCGTAC
GTAGAGCCTATGTCAAGGGATGCCATCAAGCTCAGCCAGCTGACAATGGC
ACAAATAACTGCGGGTGAGGCGTACCGCGGTCCGCTCGTCGTCACTGAAG
CAGACCGAGCTGAAGAAGAAGCAGCTCGTACTACAGCTGCCATGCTTGCG
CGCTACGATAGCGATGAATTCATCGACGATCGAGAGGAAGTGATACCTCA
GGTGCAGACACGCCCATTTTCGCTCAAGAAGCGAACCAGGTCTGAAAACA
GCAATCTTTCGAGCTCTGACTCAGAGCCCCTGTCGGGAGAGAGTGGCTCT
GAGCGCAGAAGCGAACTAGCTGCCGATGATTCACCGCTGGGTAATACCCA
AACAGAAGAGTCCCCTGCTTCACATTATGATAACGATGAACCGCAAGCAA
CTCAAACAGATTCGTCTGACTACGAGTCCAAGGAAGCTCGCTCTCCTCCG
AAAATGGTGTTGCGCCTTGTTCGAGGTGATAGGATAGCATCAGGGAAGCG
GTCAAAAGGCAGCGATAGTGAGTCTTGCGATAATCATGAAGAGGCTCTGA
CAAAATACGCCGTTGACGAGTCTAGCTACACTCCAGATCAAGCATCGAAA
CGAAGTATTCGCGAATCAGAAGCTCACGGCCTGTCGGAATTGGAATATCA
GACAAGTAAACAGCGACACTCAATGAGGCCAGCACCCGTCGCTCCCAGTT
GCGTGATTGACGCCGTTGATTCTTTTCAAGACGGTAGTACTGGTATTCGC
ATCCAACGCCCGCAAAGAAGAACTGTGCGATCGCGAAGTGGGATGAGAAG
TTCAACGAGTAATAGGGAAAGCGCAACGGTTGCTCCACTGCACACAGCTC
CTTCACAAATTTTGGACGTCATTGATCTTTGTGATGATAATCACGAAGAC
AAGGGCCGGAAGGAAGCATTACGGCAACGGGAATCCCAAGTTGTTGATTT
GTGTTCGGACGATGGTGCAGGAGAAGTCACTACACAGCCCACGCACCCAA
GACGGAGTTTGAGAACTACTAGACAGCCTATGCGGTATGGGTTACCTTGA

Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:5743..7092+

>Gcaud7242.t1 ID=Gcaud7242.t1|Name=Gcaud7242.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:5743..7092+ (Gracilaria caudata M_176_S67 male)
ATGCAGAAGCCACGCCGTCCCAGTCGCCGTCTCAGTCGCCGACTCTATCG
CCGTCCCAGTCGCCCACTACGCAAAACGCCTCGTTTTGATGACCTTGCCG
ACGATGAGCCCGAGTCTTCCAGTGATTCAATCTCCTCCGAGTCTTCTGAA
GACTCTCCACCGCCCGACTTCGCCGCCGATGCGGATGACGAGGAAGGATA
CGAATCCGCCTTAGAGGGAACGCCGTCTCCAAAGCCGCAGCCGAAGCGTC
CCTCCCGTCTCGCGAAACCGCGGTGTTTTCTCGATGCGGTCAGGCCGTAC
GTAGAGCCTATGTCAAGGGATGCCATCAAGCTCAGCCAGCTGACAATGGC
ACAAATAACTGCGGGTGAGGCGTACCGCGGTCCGCTCGTCGTCACTGAAG
CAGACCGAGCTGAAGAAGAAGCAGCTCGTACTACAGCTGCCATGCTTGCG
CGCTACGATAGCGATGAATTCATCGACGATCGAGAGGAAGTGATACCTCA
GGTGCAGACACGCCCATTTTCGCTCAAGAAGCGAACCAGGTCTGAAAACA
GCAATCTTTCGAGCTCTGACTCAGAGCCCCTGTCGGGAGAGAGTGGCTCT
GAGCGCAGAAGCGAACTAGCTGCCGATGATTCACCGCTGGGTAATACCCA
AACAGAAGAGTCCCCTGCTTCACATTATGATAACGATGAACCGCAAGCAA
CTCAAACAGATTCGTCTGACTACGAGTCCAAGGAAGCTCGCTCTCCTCCG
AAAATGGTGTTGCGCCTTGTTCGAGGTGATAGGATAGCATCAGGGAAGCG
GTCAAAAGGCAGCGATAGTGAGTCTTGCGATAATCATGAAGAGGCTCTGA
CAAAATACGCCGTTGACGAGTCTAGCTACACTCCAGATCAAGCATCGAAA
CGAAGTATTCGCGAATCAGAAGCTCACGGCCTGTCGGAATTGGAATATCA
GACAAGTAAACAGCGACACTCAATGAGGCCAGCACCCGTCGCTCCCAGTT
GCGTGATTGACGCCGTTGATTCTTTTCAAGACGGTAGTACTGGTATTCGC
ATCCAACGCCCGCAAAGAAGAACTGTGCGATCGCGAAGTGGGATGAGAAG
TTCAACGAGTAATAGGGAAAGCGCAACGGTTGCTCCACTGCACACAGCTC
CTTCACAAATTTTGGACGTCATTGATCTTTGTGATGATAATCACGAAGAC
AAGGGCCGGAAGGAAGCATTACGGCAACGGGAATCCCAAGTTGTTGATTT
GTGTTCGGACGATGGTGCAGGAGAAGTCACTACACAGCCCACGCACCCAA
GACGGAGTTTGAGAACTACTAGACAGCCTATGCGGTATGGGTTACCTTGA