Gcaud7236.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7236.t1
Unique NameGcaud7236.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7121_length_994_cov_5.316722contigNODE_7121_length_994_cov_5.316722:25..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7236Gcaud7236Gracilaria caudata M_176_S67 malegeneNODE_7121_length_994_cov_5.316722 25..507 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7236.t1.stop1Gcaud7236.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7121_length_994_cov_5.316722 25..27 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7236.t1.CDS1Gcaud7236.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7121_length_994_cov_5.316722 25..507 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7236.t1.exon1Gcaud7236.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7121_length_994_cov_5.316722 25..507 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7236.t1.start1Gcaud7236.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7121_length_994_cov_5.316722 505..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7236.t1Gcaud7236.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7121_length_994_cov_5.316722 25..507 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7236.t1 ID=Gcaud7236.t1|Name=Gcaud7236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=161bp
MDFYQELIEKYGCIGPIWCWSNSDFPDVCVRTIGIDFKMINTTESVRGMS
KERVVNAEEASGEEAADEEASSEEAAGEEAAGKESSARIDLSESSRPLFP
SLVHSAYPLKNIHACGLCNFGACDVSLVIIIFYSLCSEHRRPRTDIRMQY
ETSCRKDRAS*
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spliced messenger RNA

>Gcaud7236.t1 ID=Gcaud7236.t1|Name=Gcaud7236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_7121_length_994_cov_5.316722:25..507- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTCTATCAAGAGCTTATTGAGAAATACGGCTGCATTGGTCCGAT
CTGGTGTTGGAGTAATAGTGACTTCCCTGATGTTTGTGTGAGAACTATAG
GTATTGACTTTAAAATGATAAATACTACAGAAAGTGTTCGAGGAATGAGC
AAGGAAAGAGTGGTCAACGCAGAAGAAGCTTCTGGCGAGGAAGCTGCTGA
CGAAGAAGCTTCTAGCGAAGAAGCTGCTGGCGAAGAAGCTGCTGGCAAAG
AGTCATCAGCTCGAATTGACTTGTCAGAGAGCTCTCGGCCACTGTTCCCC
TCACTCGTTCATTCCGCATATCCCCTGAAGAACATACACGCATGTGGATT
ATGCAACTTTGGTGCTTGCGATGTTAGTCTGGTAATCATTATCTTTTACT
CGCTCTGCAGTGAGCATCGTCGCCCAAGGACAGACATTCGAATGCAGTAT
GAAACGTCCTGTCGTAAAGATCGAGCTAGTTAG
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protein sequence of Gcaud7236.t1

>Gcaud7236.t1 ID=Gcaud7236.t1|Name=Gcaud7236.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MDFYQELIEKYGCIGPIWCWSNSDFPDVCVRTIGIDFKMINTTESVRGMS
KERVVNAEEASGEEAADEEASSEEAAGEEAAGKESSARIDLSESSRPLFP
SLVHSAYPLKNIHACGLCNFGACDVSLVIIIFYSLCSEHRRPRTDIRMQY
ETSCRKDRAS*
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mRNA from alignment at NODE_7121_length_994_cov_5.316722:25..507-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7236.t1 ID=Gcaud7236.t1|Name=Gcaud7236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_7121_length_994_cov_5.316722:25..507- (Gracilaria caudata M_176_S67 male)
ATGGATTTCTATCAAGAGCTTATTGAGAAATACGGCTGCATTGGTCCGAT
CTGGTGTTGGAGTAATAGTGACTTCCCTGATGTTTGTGTGAGAACTATAG
GTATTGACTTTAAAATGATAAATACTACAGAAAGTGTTCGAGGAATGAGC
AAGGAAAGAGTGGTCAACGCAGAAGAAGCTTCTGGCGAGGAAGCTGCTGA
CGAAGAAGCTTCTAGCGAAGAAGCTGCTGGCGAAGAAGCTGCTGGCAAAG
AGTCATCAGCTCGAATTGACTTGTCAGAGAGCTCTCGGCCACTGTTCCCC
TCACTCGTTCATTCCGCATATCCCCTGAAGAACATACACGCATGTGGATT
ATGCAACTTTGGTGCTTGCGATGTTAGTCTGGTAATCATTATCTTTTACT
CGCTCTGCAGTGAGCATCGTCGCCCAAGGACAGACATTCGAATGCAGTAT
GAAACGTCCTGTCGTAAAGATCGAGCTAGTTAG
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Coding sequence (CDS) from alignment at NODE_7121_length_994_cov_5.316722:25..507-

>Gcaud7236.t1 ID=Gcaud7236.t1|Name=Gcaud7236.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=483bp|location=Sequence derived from alignment at NODE_7121_length_994_cov_5.316722:25..507- (Gracilaria caudata M_176_S67 male)
ATGGATTTCTATCAAGAGCTTATTGAGAAATACGGCTGCATTGGTCCGAT
CTGGTGTTGGAGTAATAGTGACTTCCCTGATGTTTGTGTGAGAACTATAG
GTATTGACTTTAAAATGATAAATACTACAGAAAGTGTTCGAGGAATGAGC
AAGGAAAGAGTGGTCAACGCAGAAGAAGCTTCTGGCGAGGAAGCTGCTGA
CGAAGAAGCTTCTAGCGAAGAAGCTGCTGGCGAAGAAGCTGCTGGCAAAG
AGTCATCAGCTCGAATTGACTTGTCAGAGAGCTCTCGGCCACTGTTCCCC
TCACTCGTTCATTCCGCATATCCCCTGAAGAACATACACGCATGTGGATT
ATGCAACTTTGGTGCTTGCGATGTTAGTCTGGTAATCATTATCTTTTACT
CGCTCTGCAGTGAGCATCGTCGCCCAAGGACAGACATTCGAATGCAGTAT
GAAACGTCCTGTCGTAAAGATCGAGCTAGTTAG
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