Gcaud7227.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7227.t1
Unique Name	Gcaud7227.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_726_length_19042_cov_4.198195	contig	NODE_726_length_19042_cov_4.198195:12924..14429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7227	Gcaud7227	Gracilaria caudata M_176_S67 male	gene	NODE_726_length_19042_cov_4.198195 12924..14429 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7227.t1.start1	Gcaud7227.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_726_length_19042_cov_4.198195 12924..12926 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7227.t1.CDS1	Gcaud7227.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_726_length_19042_cov_4.198195 12924..14429 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7227.t1.exon1	Gcaud7227.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_726_length_19042_cov_4.198195 12924..14429 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7227.t1.stop1	Gcaud7227.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_726_length_19042_cov_4.198195 14427..14429 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7227.t1	Gcaud7227.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_726_length_19042_cov_4.198195 12924..14429 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_726_length_19042_cov_4.198195:12924..14429+
coding sequence from alignment at NODE_726_length_19042_cov_4.198195:12924..14429+

mRNA sequence

>Gcaud7227.t1 ID=Gcaud7227.t1|Name=Gcaud7227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=502bp
MFALVLISYLLLASVIPAVLASCITPTPSPGSSPSPSPSPLPPEPKWYEG
RYFYYAADGPIGTTLRKVDGFVDAVDDAIDLLERVERTIVDEQKYRLNNK
VKELAFREPHICNLEDDQWRSSAVDQLVVRGFPDTLERSCITDFVFPDPS
DELLMRDTVETISRKVSDAALNISVAANTNFTDPDSIYDWPLSTKTEDCV
INVLGAFRLEKDSDWFLNIGITNEDQQRHLPENARQYLNENIGRGSVSGR
LRLFVRPDDDAINKTHVQRDATTMIITHRGVAAPGVFKNIPLAENLAVIR
ALDKAELRSQQVSDALSPSSIAILFLPLVLNVIPIALLADVGTRATLVYA
MLSDVVTVIPLSVKGIELISTGSNVFYGSILRMSSSSDGLQPDMAAAEVY
VARCNSKHNVLPTGIAFLTISIVFMILGLVGDVVAKRYAMRHRRRLYGRI
SLSSSRSSSSSAAERPRSRSNSIPMIETRGAEHFAMELDSYDGDYNDDHR
L*

spliced messenger RNA

>Gcaud7227.t1 ID=Gcaud7227.t1|Name=Gcaud7227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at NODE_726_length_19042_cov_4.198195:12924..14429+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCTTTAGTGCTAATTTCGTACCTGCTTCTTGCGTCCGTCATTCC
CGCTGTATTGGCCAGCTGCATCACGCCCACGCCTAGTCCGGGTTCAAGCC
CGTCTCCGTCCCCGAGCCCATTACCTCCGGAACCGAAGTGGTATGAAGGC
CGATATTTTTATTACGCCGCTGACGGGCCGATAGGAACGACGTTGCGGAA
AGTCGATGGCTTCGTCGACGCCGTTGATGACGCGATAGACCTCCTTGAAA
GGGTTGAACGCACCATTGTGGATGAACAGAAGTACCGCCTAAACAACAAA
GTCAAAGAATTGGCCTTTCGGGAGCCTCATATATGCAATTTGGAGGATGA
CCAATGGCGAAGTTCTGCTGTTGATCAACTGGTTGTTCGTGGCTTCCCGG
ACACTCTTGAGAGATCCTGTATAACTGACTTTGTGTTTCCGGACCCCTCT
GACGAGCTCCTCATGCGCGATACCGTTGAAACAATCTCACGCAAGGTCTC
TGATGCCGCGCTCAACATCTCAGTTGCCGCTAACACCAACTTCACTGATC
CGGACTCAATTTACGACTGGCCCCTTTCGACCAAGACCGAGGATTGTGTC
ATCAATGTGCTTGGCGCGTTTCGTTTGGAGAAAGACAGCGATTGGTTCTT
GAACATTGGAATCACAAACGAGGATCAGCAGAGGCACTTGCCGGAGAACG
CTAGACAGTACTTGAACGAGAATATTGGTCGAGGTTCAGTATCCGGCAGA
TTAAGACTGTTCGTCAGACCCGATGATGATGCAATCAATAAGACTCACGT
ACAAAGAGATGCAACCACCATGATAATCACACATCGCGGTGTTGCCGCTC
CCGGTGTGTTCAAGAACATCCCCCTCGCGGAGAATCTTGCTGTGATCAGG
GCACTTGACAAGGCCGAGTTGCGATCTCAACAAGTGAGTGATGCGTTGAG
TCCGTCCAGTATTGCCATTCTTTTCTTACCGCTTGTATTGAATGTCATCC
CGATTGCACTGTTGGCCGATGTGGGAACAAGGGCCACATTAGTTTATGCC
ATGTTGAGCGACGTGGTCACTGTGATCCCGCTCAGTGTTAAGGGTATTGA
ACTCATATCCACAGGGTCCAATGTATTTTACGGATCGATTCTACGCATGT
CATCATCCTCCGACGGACTTCAACCAGACATGGCGGCGGCCGAGGTGTAC
GTTGCGAGGTGCAACTCAAAGCACAATGTTTTGCCAACCGGTATTGCGTT
CTTGACGATTTCAATCGTATTTATGATACTTGGGTTGGTAGGTGATGTTG
TGGCGAAGAGATATGCCATGAGACATCGACGACGGCTGTACGGAAGAATC
TCCCTTTCAAGCTCTCGAAGTTCTTCGTCGAGCGCTGCGGAGCGACCCCG
ATCGAGGAGTAACAGTATACCCATGATTGAAACCAGAGGTGCTGAACATT
TTGCAATGGAATTGGATTCGTATGATGGTGACTATAACGATGACCATAGA
TTATGA

protein sequence of Gcaud7227.t1

>Gcaud7227.t1 ID=Gcaud7227.t1|Name=Gcaud7227.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=502bp
MFALVLISYLLLASVIPAVLASCITPTPSPGSSPSPSPSPLPPEPKWYEG
RYFYYAADGPIGTTLRKVDGFVDAVDDAIDLLERVERTIVDEQKYRLNNK
VKELAFREPHICNLEDDQWRSSAVDQLVVRGFPDTLERSCITDFVFPDPS
DELLMRDTVETISRKVSDAALNISVAANTNFTDPDSIYDWPLSTKTEDCV
INVLGAFRLEKDSDWFLNIGITNEDQQRHLPENARQYLNENIGRGSVSGR
LRLFVRPDDDAINKTHVQRDATTMIITHRGVAAPGVFKNIPLAENLAVIR
ALDKAELRSQQVSDALSPSSIAILFLPLVLNVIPIALLADVGTRATLVYA
MLSDVVTVIPLSVKGIELISTGSNVFYGSILRMSSSSDGLQPDMAAAEVY
VARCNSKHNVLPTGIAFLTISIVFMILGLVGDVVAKRYAMRHRRRLYGRI
SLSSSRSSSSSAAERPRSRSNSIPMIETRGAEHFAMELDSYDGDYNDDHR
L*

mRNA from alignment at NODE_726_length_19042_cov_4.198195:12924..14429+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7227.t1 ID=Gcaud7227.t1|Name=Gcaud7227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at NODE_726_length_19042_cov_4.198195:12924..14429+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCTTTAGTGCTAATTTCGTACCTGCTTCTTGCGTCCGTCATTCC
CGCTGTATTGGCCAGCTGCATCACGCCCACGCCTAGTCCGGGTTCAAGCC
CGTCTCCGTCCCCGAGCCCATTACCTCCGGAACCGAAGTGGTATGAAGGC
CGATATTTTTATTACGCCGCTGACGGGCCGATAGGAACGACGTTGCGGAA
AGTCGATGGCTTCGTCGACGCCGTTGATGACGCGATAGACCTCCTTGAAA
GGGTTGAACGCACCATTGTGGATGAACAGAAGTACCGCCTAAACAACAAA
GTCAAAGAATTGGCCTTTCGGGAGCCTCATATATGCAATTTGGAGGATGA
CCAATGGCGAAGTTCTGCTGTTGATCAACTGGTTGTTCGTGGCTTCCCGG
ACACTCTTGAGAGATCCTGTATAACTGACTTTGTGTTTCCGGACCCCTCT
GACGAGCTCCTCATGCGCGATACCGTTGAAACAATCTCACGCAAGGTCTC
TGATGCCGCGCTCAACATCTCAGTTGCCGCTAACACCAACTTCACTGATC
CGGACTCAATTTACGACTGGCCCCTTTCGACCAAGACCGAGGATTGTGTC
ATCAATGTGCTTGGCGCGTTTCGTTTGGAGAAAGACAGCGATTGGTTCTT
GAACATTGGAATCACAAACGAGGATCAGCAGAGGCACTTGCCGGAGAACG
CTAGACAGTACTTGAACGAGAATATTGGTCGAGGTTCAGTATCCGGCAGA
TTAAGACTGTTCGTCAGACCCGATGATGATGCAATCAATAAGACTCACGT
ACAAAGAGATGCAACCACCATGATAATCACACATCGCGGTGTTGCCGCTC
CCGGTGTGTTCAAGAACATCCCCCTCGCGGAGAATCTTGCTGTGATCAGG
GCACTTGACAAGGCCGAGTTGCGATCTCAACAAGTGAGTGATGCGTTGAG
TCCGTCCAGTATTGCCATTCTTTTCTTACCGCTTGTATTGAATGTCATCC
CGATTGCACTGTTGGCCGATGTGGGAACAAGGGCCACATTAGTTTATGCC
ATGTTGAGCGACGTGGTCACTGTGATCCCGCTCAGTGTTAAGGGTATTGA
ACTCATATCCACAGGGTCCAATGTATTTTACGGATCGATTCTACGCATGT
CATCATCCTCCGACGGACTTCAACCAGACATGGCGGCGGCCGAGGTGTAC
GTTGCGAGGTGCAACTCAAAGCACAATGTTTTGCCAACCGGTATTGCGTT
CTTGACGATTTCAATCGTATTTATGATACTTGGGTTGGTAGGTGATGTTG
TGGCGAAGAGATATGCCATGAGACATCGACGACGGCTGTACGGAAGAATC
TCCCTTTCAAGCTCTCGAAGTTCTTCGTCGAGCGCTGCGGAGCGACCCCG
ATCGAGGAGTAACAGTATACCCATGATTGAAACCAGAGGTGCTGAACATT
TTGCAATGGAATTGGATTCGTATGATGGTGACTATAACGATGACCATAGA
TTATGA

Coding sequence (CDS) from alignment at NODE_726_length_19042_cov_4.198195:12924..14429+

>Gcaud7227.t1 ID=Gcaud7227.t1|Name=Gcaud7227.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1506bp|location=Sequence derived from alignment at NODE_726_length_19042_cov_4.198195:12924..14429+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCTTTAGTGCTAATTTCGTACCTGCTTCTTGCGTCCGTCATTCC
CGCTGTATTGGCCAGCTGCATCACGCCCACGCCTAGTCCGGGTTCAAGCC
CGTCTCCGTCCCCGAGCCCATTACCTCCGGAACCGAAGTGGTATGAAGGC
CGATATTTTTATTACGCCGCTGACGGGCCGATAGGAACGACGTTGCGGAA
AGTCGATGGCTTCGTCGACGCCGTTGATGACGCGATAGACCTCCTTGAAA
GGGTTGAACGCACCATTGTGGATGAACAGAAGTACCGCCTAAACAACAAA
GTCAAAGAATTGGCCTTTCGGGAGCCTCATATATGCAATTTGGAGGATGA
CCAATGGCGAAGTTCTGCTGTTGATCAACTGGTTGTTCGTGGCTTCCCGG
ACACTCTTGAGAGATCCTGTATAACTGACTTTGTGTTTCCGGACCCCTCT
GACGAGCTCCTCATGCGCGATACCGTTGAAACAATCTCACGCAAGGTCTC
TGATGCCGCGCTCAACATCTCAGTTGCCGCTAACACCAACTTCACTGATC
CGGACTCAATTTACGACTGGCCCCTTTCGACCAAGACCGAGGATTGTGTC
ATCAATGTGCTTGGCGCGTTTCGTTTGGAGAAAGACAGCGATTGGTTCTT
GAACATTGGAATCACAAACGAGGATCAGCAGAGGCACTTGCCGGAGAACG
CTAGACAGTACTTGAACGAGAATATTGGTCGAGGTTCAGTATCCGGCAGA
TTAAGACTGTTCGTCAGACCCGATGATGATGCAATCAATAAGACTCACGT
ACAAAGAGATGCAACCACCATGATAATCACACATCGCGGTGTTGCCGCTC
CCGGTGTGTTCAAGAACATCCCCCTCGCGGAGAATCTTGCTGTGATCAGG
GCACTTGACAAGGCCGAGTTGCGATCTCAACAAGTGAGTGATGCGTTGAG
TCCGTCCAGTATTGCCATTCTTTTCTTACCGCTTGTATTGAATGTCATCC
CGATTGCACTGTTGGCCGATGTGGGAACAAGGGCCACATTAGTTTATGCC
ATGTTGAGCGACGTGGTCACTGTGATCCCGCTCAGTGTTAAGGGTATTGA
ACTCATATCCACAGGGTCCAATGTATTTTACGGATCGATTCTACGCATGT
CATCATCCTCCGACGGACTTCAACCAGACATGGCGGCGGCCGAGGTGTAC
GTTGCGAGGTGCAACTCAAAGCACAATGTTTTGCCAACCGGTATTGCGTT
CTTGACGATTTCAATCGTATTTATGATACTTGGGTTGGTAGGTGATGTTG
TGGCGAAGAGATATGCCATGAGACATCGACGACGGCTGTACGGAAGAATC
TCCCTTTCAAGCTCTCGAAGTTCTTCGTCGAGCGCTGCGGAGCGACCCCG
ATCGAGGAGTAACAGTATACCCATGATTGAAACCAGAGGTGCTGAACATT
TTGCAATGGAATTGGATTCGTATGATGGTGACTATAACGATGACCATAGA
TTATGA