Gcaud7209.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7209.t1
Unique NameGcaud7209.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_476_length_24381_cov_4.240099contigNODE_476_length_24381_cov_4.240099:17866..18540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926559.JoomaDRAFT_1912
PFAMsNAD_binding_10
Max annot lvl976|Bacteroidetes
Evalue3.89e-14
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,4NMI5@976|Bacteroidetes,1IJ1D@117743|Flavobacteriia
DescriptionNmrA-like family
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7209Gcaud7209Gracilaria caudata M_176_S67 malegeneNODE_476_length_24381_cov_4.240099 17866..18540 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7209.t1.stop1Gcaud7209.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_476_length_24381_cov_4.240099 17866..17868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7209.t1.CDS1Gcaud7209.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_476_length_24381_cov_4.240099 17866..18540 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7209.t1.exon1Gcaud7209.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_476_length_24381_cov_4.240099 17866..18540 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7209.t1.start1Gcaud7209.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_476_length_24381_cov_4.240099 18538..18540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7209.t1Gcaud7209.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_476_length_24381_cov_4.240099 17866..18540 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7209.t1 ID=Gcaud7209.t1|Name=Gcaud7209.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp
MATSILVIGANGRTGTQIIRAASALEDAPQVHAFVRNPDSLSPTLTSQCT
SVQKGDALQTDDVHTALVASNATHLVVAIGVPNDLSVTSLRTDSAKAITQ
AIDKCARDVKVVVVSSVGAGGTCIKIGFGIGMIVGGMLRHVLHDHDGQEQ
CFNTSFENKKNSLLIVRPTSLTEGHGGSGVVQFDGQRKSPTSKLDRQDLA
EWIVQQICGSGDAFGSAVNITRAP*
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spliced messenger RNA

>Gcaud7209.t1 ID=Gcaud7209.t1|Name=Gcaud7209.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:17866..18540- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACATCCATCCTTGTCATTGGTGCAAACGGGCGCACCGGAACACA
AATTATCCGTGCCGCATCAGCCCTCGAAGACGCCCCGCAAGTTCACGCTT
TTGTCCGCAATCCCGACTCGCTTTCGCCCACACTCACGTCTCAATGCACC
TCAGTACAAAAGGGCGACGCGCTCCAGACAGACGACGTACACACCGCCCT
CGTCGCATCCAACGCCACTCATTTGGTCGTGGCTATTGGTGTGCCGAATG
ACCTCTCCGTCACGTCGCTTCGCACAGACTCTGCCAAAGCAATCACACAA
GCCATTGACAAGTGCGCGCGTGACGTGAAGGTTGTCGTCGTCTCTAGTGT
TGGTGCCGGAGGCACCTGTATCAAAATAGGCTTTGGCATTGGTATGATTG
TTGGTGGAATGCTTCGCCATGTTCTTCACGATCATGATGGTCAGGAGCAA
TGCTTCAACACGTCATTTGAGAACAAGAAGAATAGCTTGCTAATTGTCAG
ACCCACAAGCCTGACGGAAGGACACGGAGGCTCTGGGGTGGTGCAATTCG
ACGGTCAGAGGAAGAGCCCGACATCAAAATTGGACAGACAAGACCTTGCC
GAATGGATTGTTCAACAGATTTGCGGTAGTGGAGATGCGTTCGGGAGCGC
AGTCAATATTACTCGGGCGCCCTGA
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protein sequence of Gcaud7209.t1

>Gcaud7209.t1 ID=Gcaud7209.t1|Name=Gcaud7209.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MATSILVIGANGRTGTQIIRAASALEDAPQVHAFVRNPDSLSPTLTSQCT
SVQKGDALQTDDVHTALVASNATHLVVAIGVPNDLSVTSLRTDSAKAITQ
AIDKCARDVKVVVVSSVGAGGTCIKIGFGIGMIVGGMLRHVLHDHDGQEQ
CFNTSFENKKNSLLIVRPTSLTEGHGGSGVVQFDGQRKSPTSKLDRQDLA
EWIVQQICGSGDAFGSAVNITRAP*
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mRNA from alignment at NODE_476_length_24381_cov_4.240099:17866..18540-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7209.t1 ID=Gcaud7209.t1|Name=Gcaud7209.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:17866..18540- (Gracilaria caudata M_176_S67 male)
ATGGCTACATCCATCCTTGTCATTGGTGCAAACGGGCGCACCGGAACACA
AATTATCCGTGCCGCATCAGCCCTCGAAGACGCCCCGCAAGTTCACGCTT
TTGTCCGCAATCCCGACTCGCTTTCGCCCACACTCACGTCTCAATGCACC
TCAGTACAAAAGGGCGACGCGCTCCAGACAGACGACGTACACACCGCCCT
CGTCGCATCCAACGCCACTCATTTGGTCGTGGCTATTGGTGTGCCGAATG
ACCTCTCCGTCACGTCGCTTCGCACAGACTCTGCCAAAGCAATCACACAA
GCCATTGACAAGTGCGCGCGTGACGTGAAGGTTGTCGTCGTCTCTAGTGT
TGGTGCCGGAGGCACCTGTATCAAAATAGGCTTTGGCATTGGTATGATTG
TTGGTGGAATGCTTCGCCATGTTCTTCACGATCATGATGGTCAGGAGCAA
TGCTTCAACACGTCATTTGAGAACAAGAAGAATAGCTTGCTAATTGTCAG
ACCCACAAGCCTGACGGAAGGACACGGAGGCTCTGGGGTGGTGCAATTCG
ACGGTCAGAGGAAGAGCCCGACATCAAAATTGGACAGACAAGACCTTGCC
GAATGGATTGTTCAACAGATTTGCGGTAGTGGAGATGCGTTCGGGAGCGC
AGTCAATATTACTCGGGCGCCCTGA
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Coding sequence (CDS) from alignment at NODE_476_length_24381_cov_4.240099:17866..18540-

>Gcaud7209.t1 ID=Gcaud7209.t1|Name=Gcaud7209.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=675bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:17866..18540- (Gracilaria caudata M_176_S67 male)
ATGGCTACATCCATCCTTGTCATTGGTGCAAACGGGCGCACCGGAACACA
AATTATCCGTGCCGCATCAGCCCTCGAAGACGCCCCGCAAGTTCACGCTT
TTGTCCGCAATCCCGACTCGCTTTCGCCCACACTCACGTCTCAATGCACC
TCAGTACAAAAGGGCGACGCGCTCCAGACAGACGACGTACACACCGCCCT
CGTCGCATCCAACGCCACTCATTTGGTCGTGGCTATTGGTGTGCCGAATG
ACCTCTCCGTCACGTCGCTTCGCACAGACTCTGCCAAAGCAATCACACAA
GCCATTGACAAGTGCGCGCGTGACGTGAAGGTTGTCGTCGTCTCTAGTGT
TGGTGCCGGAGGCACCTGTATCAAAATAGGCTTTGGCATTGGTATGATTG
TTGGTGGAATGCTTCGCCATGTTCTTCACGATCATGATGGTCAGGAGCAA
TGCTTCAACACGTCATTTGAGAACAAGAAGAATAGCTTGCTAATTGTCAG
ACCCACAAGCCTGACGGAAGGACACGGAGGCTCTGGGGTGGTGCAATTCG
ACGGTCAGAGGAAGAGCCCGACATCAAAATTGGACAGACAAGACCTTGCC
GAATGGATTGTTCAACAGATTTGCGGTAGTGGAGATGCGTTCGGGAGCGC
AGTCAATATTACTCGGGCGCCCTGA
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