Gcaud7205.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7205.t1
Unique NameGcaud7205.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_476_length_24381_cov_4.240099contigNODE_476_length_24381_cov_4.240099:4619..5367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7205Gcaud7205Gracilaria caudata M_176_S67 malegeneNODE_476_length_24381_cov_4.240099 4619..5367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7205.t1Gcaud7205.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_476_length_24381_cov_4.240099 4619..5367 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7205.t1.stop1Gcaud7205.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_476_length_24381_cov_4.240099 4619..4621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7205.t1.CDS1Gcaud7205.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_476_length_24381_cov_4.240099 4619..4747 -
Gcaud7205.t1.CDS2Gcaud7205.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_476_length_24381_cov_4.240099 4870..5367 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7205.t1.exon1Gcaud7205.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_476_length_24381_cov_4.240099 4619..4747 -
Gcaud7205.t1.exon2Gcaud7205.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_476_length_24381_cov_4.240099 4870..5367 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7205.t1.intron1Gcaud7205.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_476_length_24381_cov_4.240099 4748..4869 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7205.t1.start1Gcaud7205.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_476_length_24381_cov_4.240099 5365..5367 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7205.t1 ID=Gcaud7205.t1|Name=Gcaud7205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=209bp
MQQLILGMPLVPSDGSTTFVDQPCLRVDNGKALDQTFPTTYEAAAILLTC
STKQGTVVTHFSGQRSSVSSSVLCDNTPLISFDEEADRLDMPVGSKQSFC
QNGLCVFFEATGNQVLLSALISEDQVPSLRGIQGSRVPFLRTTLSFAFDG
MLQTFASRMLSAFAQNNFHVDIRWALPTFDLVFASLASALHILLDEGAVR
SPQNLHDV*
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spliced messenger RNA

>Gcaud7205.t1 ID=Gcaud7205.t1|Name=Gcaud7205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=627bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:4619..5367- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACAACTCATTCTCGGTATGCCGCTCGTGCCCTCCGACGGGTCCAC
CACGTTTGTGGATCAGCCGTGTCTGCGAGTGGACAACGGAAAAGCTCTGG
ACCAAACGTTCCCCACCACGTACGAAGCAGCCGCTATTCTGCTCACCTGT
TCAACCAAACAGGGCACGGTTGTCACCCACTTCTCCGGCCAAAGAAGCTC
CGTAAGCTCCAGCGTGCTCTGCGACAACACTCCACTGATCTCATTCGACG
AAGAGGCAGACCGTCTGGACATGCCCGTCGGCAGCAAGCAATCCTTCTGC
CAGAACGGACTATGTGTGTTCTTCGAGGCTACAGGTAATCAGGTGCTACT
CTCAGCGCTCATATCCGAGGATCAGGTTCCGTCACTTCGGGGCATTCAAG
GCTCGAGAGTGCCCTTCTTGAGGACCACGTTGTCGTTTGCGTTCGACGGC
ATGCTTCAGACGTTTGCCAGTCGCATGCTTTCTGCATTCGCGCAGAACAA
CTTTCATGTAGATATACGATGGGCGCTTCCCACTTTTGATCTCGTCTTTG
CGTCGCTTGCCAGTGCCCTTCACATCTTACTCGACGAAGGTGCTGTGCGT
TCACCGCAGAACCTGCATGACGTGTAG
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protein sequence of Gcaud7205.t1

>Gcaud7205.t1 ID=Gcaud7205.t1|Name=Gcaud7205.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=209bp
MQQLILGMPLVPSDGSTTFVDQPCLRVDNGKALDQTFPTTYEAAAILLTC
STKQGTVVTHFSGQRSSVSSSVLCDNTPLISFDEEADRLDMPVGSKQSFC
QNGLCVFFEATGNQVLLSALISEDQVPSLRGIQGSRVPFLRTTLSFAFDG
MLQTFASRMLSAFAQNNFHVDIRWALPTFDLVFASLASALHILLDEGAVR
SPQNLHDV*
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mRNA from alignment at NODE_476_length_24381_cov_4.240099:4619..5367-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7205.t1 ID=Gcaud7205.t1|Name=Gcaud7205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=749bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:4619..5367- (Gracilaria caudata M_176_S67 male)
ATGCAACAACTCATTCTCGGTATGCCGCTCGTGCCCTCCGACGGGTCCAC
CACGTTTGTGGATCAGCCGTGTCTGCGAGTGGACAACGGAAAAGCTCTGG
ACCAAACGTTCCCCACCACGTACGAAGCAGCCGCTATTCTGCTCACCTGT
TCAACCAAACAGGGCACGGTTGTCACCCACTTCTCCGGCCAAAGAAGCTC
CGTAAGCTCCAGCGTGCTCTGCGACAACACTCCACTGATCTCATTCGACG
AAGAGGCAGACCGTCTGGACATGCCCGTCGGCAGCAAGCAATCCTTCTGC
CAGAACGGACTATGTGTGTTCTTCGAGGCTACAGGTAATCAGGTGCTACT
CTCAGCGCTCATATCCGAGGATCAGGTTCCGTCACTTCGGGGCATTCAAG
GCTCGAGAGTGCCCTTCTTGAGGACCACGTTGTCGTTTGCGTTCGACGGC
ATGCTTCAGACGTTTGCCAGTCGCATGCTTTCTGCATTCGCGCAGAACGT
GAGTGGAGAGATTGATCTGAGGGCGATAGCGTTCCTGAGCACTTCTGCAA
CCACATGTTCATTCCCGGTGGCTCCTTGTTTCTGTCAAAGTTAACCTCTA
TGCTCCTTTGTTGTAAATAGAACTTTCATGTAGATATACGATGGGCGCTT
CCCACTTTTGATCTCGTCTTTGCGTCGCTTGCCAGTGCCCTTCACATCTT
ACTCGACGAAGGTGCTGTGCGTTCACCGCAGAACCTGCATGACGTGTAG
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Coding sequence (CDS) from alignment at NODE_476_length_24381_cov_4.240099:4619..5367-

>Gcaud7205.t1 ID=Gcaud7205.t1|Name=Gcaud7205.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=627bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:4619..5367- (Gracilaria caudata M_176_S67 male)
ATGCAACAACTCATTCTCGGTATGCCGCTCGTGCCCTCCGACGGGTCCAC
CACGTTTGTGGATCAGCCGTGTCTGCGAGTGGACAACGGAAAAGCTCTGG
ACCAAACGTTCCCCACCACGTACGAAGCAGCCGCTATTCTGCTCACCTGT
TCAACCAAACAGGGCACGGTTGTCACCCACTTCTCCGGCCAAAGAAGCTC
CGTAAGCTCCAGCGTGCTCTGCGACAACACTCCACTGATCTCATTCGACG
AAGAGGCAGACCGTCTGGACATGCCCGTCGGCAGCAAGCAATCCTTCTGC
CAGAACGGACTATGTGTGTTCTTCGAGGCTACAGGTAATCAGGTGCTACT
CTCAGCGCTCATATCCGAGGATCAGGTTCCGTCACTTCGGGGCATTCAAG
GCTCGAGAGTGCCCTTCTTGAGGACCACGTTGTCGTTTGCGTTCGACGGC
ATGCTTCAGACGTTTGCCAGTCGCATGCTTTCTGCATTCGCGCAGAACAA
CTTTCATGTAGATATACGATGGGCGCTTCCCACTTTTGATCTCGTCTTTG
CGTCGCTTGCCAGTGCCCTTCACATCTTACTCGACGAAGGTGCTGTGCGT
TCACCGCAGAACCTGCATGACGTGTAG
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