Gcaud7201.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7201.t1
Unique Name	Gcaud7201.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_651_length_20246_cov_4.368345	contig	NODE_651_length_20246_cov_4.368345:17665..19197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LU31
PFAMs	LrgB
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006996,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009657,GO:0009658,GO:0009706,GO:0009853,GO:0009941,GO:0009987,GO:0015075,GO:0015144,GO:0015238,GO:0015318,GO:0015665,GO:0015711,GO:0015718,GO:0015849,GO:0015850,GO:0015893,GO:0016020,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0034219,GO:0034220,GO:0042170,GO:0042221,GO:0042493,GO:0042873,GO:0042879,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043879,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0097339,GO:0098656,GO:1900866,GO:1901618,GO:1901974,GO:1901975,GO:1903825,GO:1905039
Evalue	7.07e-64
EggNOG OGs	COG1346@1\|root,2QQ63@2759\|Eukaryota
Description	LrgB-like family
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7201	Gcaud7201	Gracilaria caudata M_176_S67 male	gene	NODE_651_length_20246_cov_4.368345 17665..19197 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7201.t1.start1	Gcaud7201.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_651_length_20246_cov_4.368345 17665..17667 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7201.t1.CDS1	Gcaud7201.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_651_length_20246_cov_4.368345 17665..19197 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7201.t1.exon1	Gcaud7201.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_651_length_20246_cov_4.368345 17665..19197 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7201.t1.stop1	Gcaud7201.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_651_length_20246_cov_4.368345 19195..19197 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7201.t1	Gcaud7201.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_651_length_20246_cov_4.368345 17665..19197 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_651_length_20246_cov_4.368345:17665..19197+
coding sequence from alignment at NODE_651_length_20246_cov_4.368345:17665..19197+

mRNA sequence

>Gcaud7201.t1 ID=Gcaud7201.t1|Name=Gcaud7201.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=511bp
MHLRAPTSCFVAAPPSLRRVSSAARPIADVRPRPSAPLNKHSAFIPHVTS
VRSRHVSGRKRTTPSASATSEAPASPVPSSPVASFLLSTVHCVVSLGLLI
VIQRGVGKALAALNIAFPAPLASMLLLLALLSVLRVFSSPFVDRLNALLF
NPAVAFLTRWLAVFFVPNLVMLPLAPSLPSAHIAKIGLIIVCGFFFTLLS
TAVVCIALRSMVSLTTGKPPASLSVTASKSAPPSNPLILCLTVLSMFSFA
LATRSVRYAATAYALFATLLTFTVGQRFPSGLKMFLHPLVTCTCGTIGAV
ALLGVATSTPFPTMLATYYTRGSAWGAGDILASLLGPAVVTFAFTMDRQR
KLALARVVEVVFGTLFATLASLFGTAFVARLLTLPADTALIVLPRTVTAP
LAVAIADLLGANMGLAASVVALTGLLGANIAASVLTAFRVKDPVVRGLSV
GASAHGLGTAALSDEPGAFPFAALAMTLVGIFSTIFIAFPPLRVMVVRVA
VGLATKTAVQ*

spliced messenger RNA

>Gcaud7201.t1 ID=Gcaud7201.t1|Name=Gcaud7201.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:17665..19197+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTGCGAGCGCCCACTTCTTGCTTCGTCGCCGCACCGCCCTCGCT
CAGACGCGTCTCGTCGGCGGCGAGACCCATTGCCGATGTTCGTCCTCGCC
CCTCGGCACCGCTCAACAAGCACTCGGCGTTCATCCCTCACGTAACATCT
GTTCGCTCGCGACATGTATCAGGCCGAAAGCGCACAACTCCCAGCGCCTC
GGCCACTTCCGAGGCGCCGGCTTCGCCCGTGCCGTCTTCGCCAGTCGCTT
CTTTTCTATTGTCTACAGTGCATTGCGTAGTGTCGCTGGGGCTTTTGATC
GTCATTCAACGTGGGGTTGGCAAAGCGCTCGCTGCATTGAACATAGCTTT
CCCTGCGCCATTGGCTTCGATGCTTCTTCTTCTTGCCCTCCTCTCGGTGC
TGCGTGTCTTCTCCTCGCCTTTTGTTGATCGTCTCAATGCTTTGCTTTTC
AACCCTGCTGTAGCCTTTCTCACCCGCTGGCTTGCTGTCTTCTTCGTGCC
CAACTTGGTCATGCTTCCACTGGCGCCCTCCTTACCAAGCGCCCACATAG
CCAAGATTGGCCTTATAATCGTTTGCGGCTTCTTCTTCACCCTTCTATCA
ACGGCTGTCGTATGCATAGCTCTACGATCCATGGTTTCGCTCACCACAGG
AAAGCCCCCGGCATCCCTCTCAGTTACAGCGTCCAAAAGCGCACCCCCGT
CCAATCCACTTATTCTTTGTTTAACAGTTCTTTCTATGTTTTCCTTCGCG
CTCGCCACTCGCTCAGTACGATACGCTGCAACTGCCTACGCGCTATTCGC
CACTTTGTTGACTTTTACAGTCGGTCAGCGATTCCCCTCCGGACTTAAGA
TGTTTCTCCATCCACTTGTCACTTGTACTTGTGGCACAATAGGAGCGGTG
GCCTTGCTGGGAGTTGCCACATCCACTCCATTCCCCACCATGTTAGCCAC
ATACTACACTCGCGGCTCTGCTTGGGGTGCCGGTGACATCCTCGCGTCTC
TGCTTGGACCCGCGGTTGTCACGTTTGCTTTCACTATGGATCGTCAGCGC
AAGCTTGCGCTCGCCAGAGTTGTCGAGGTTGTATTTGGGACCTTGTTCGC
CACACTCGCGTCTTTGTTCGGGACCGCTTTCGTCGCTCGTCTGCTCACAC
TGCCGGCAGATACCGCTTTGATTGTGCTACCTCGCACTGTTACAGCACCT
CTTGCGGTAGCAATAGCTGATCTGCTGGGCGCGAATATGGGACTCGCCGC
GAGTGTGGTCGCTTTGACTGGACTTCTCGGCGCAAACATAGCGGCCAGTG
TACTGACCGCCTTCCGCGTGAAGGATCCGGTTGTGAGGGGGCTGTCCGTG
GGAGCATCTGCGCACGGACTGGGCACGGCGGCGTTGAGCGACGAACCTGG
TGCCTTTCCGTTTGCGGCTCTGGCCATGACGTTAGTGGGCATCTTTAGCA
CGATTTTCATTGCATTCCCGCCGCTGCGTGTGATGGTGGTTCGGGTGGCA
GTAGGGCTAGCAACAAAGACCGCTGTACAGTGA

protein sequence of Gcaud7201.t1

>Gcaud7201.t1 ID=Gcaud7201.t1|Name=Gcaud7201.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=511bp
MHLRAPTSCFVAAPPSLRRVSSAARPIADVRPRPSAPLNKHSAFIPHVTS
VRSRHVSGRKRTTPSASATSEAPASPVPSSPVASFLLSTVHCVVSLGLLI
VIQRGVGKALAALNIAFPAPLASMLLLLALLSVLRVFSSPFVDRLNALLF
NPAVAFLTRWLAVFFVPNLVMLPLAPSLPSAHIAKIGLIIVCGFFFTLLS
TAVVCIALRSMVSLTTGKPPASLSVTASKSAPPSNPLILCLTVLSMFSFA
LATRSVRYAATAYALFATLLTFTVGQRFPSGLKMFLHPLVTCTCGTIGAV
ALLGVATSTPFPTMLATYYTRGSAWGAGDILASLLGPAVVTFAFTMDRQR
KLALARVVEVVFGTLFATLASLFGTAFVARLLTLPADTALIVLPRTVTAP
LAVAIADLLGANMGLAASVVALTGLLGANIAASVLTAFRVKDPVVRGLSV
GASAHGLGTAALSDEPGAFPFAALAMTLVGIFSTIFIAFPPLRVMVVRVA
VGLATKTAVQ*

mRNA from alignment at NODE_651_length_20246_cov_4.368345:17665..19197+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7201.t1 ID=Gcaud7201.t1|Name=Gcaud7201.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:17665..19197+ (Gracilaria caudata M_176_S67 male)
ATGCATTTGCGAGCGCCCACTTCTTGCTTCGTCGCCGCACCGCCCTCGCT
CAGACGCGTCTCGTCGGCGGCGAGACCCATTGCCGATGTTCGTCCTCGCC
CCTCGGCACCGCTCAACAAGCACTCGGCGTTCATCCCTCACGTAACATCT
GTTCGCTCGCGACATGTATCAGGCCGAAAGCGCACAACTCCCAGCGCCTC
GGCCACTTCCGAGGCGCCGGCTTCGCCCGTGCCGTCTTCGCCAGTCGCTT
CTTTTCTATTGTCTACAGTGCATTGCGTAGTGTCGCTGGGGCTTTTGATC
GTCATTCAACGTGGGGTTGGCAAAGCGCTCGCTGCATTGAACATAGCTTT
CCCTGCGCCATTGGCTTCGATGCTTCTTCTTCTTGCCCTCCTCTCGGTGC
TGCGTGTCTTCTCCTCGCCTTTTGTTGATCGTCTCAATGCTTTGCTTTTC
AACCCTGCTGTAGCCTTTCTCACCCGCTGGCTTGCTGTCTTCTTCGTGCC
CAACTTGGTCATGCTTCCACTGGCGCCCTCCTTACCAAGCGCCCACATAG
CCAAGATTGGCCTTATAATCGTTTGCGGCTTCTTCTTCACCCTTCTATCA
ACGGCTGTCGTATGCATAGCTCTACGATCCATGGTTTCGCTCACCACAGG
AAAGCCCCCGGCATCCCTCTCAGTTACAGCGTCCAAAAGCGCACCCCCGT
CCAATCCACTTATTCTTTGTTTAACAGTTCTTTCTATGTTTTCCTTCGCG
CTCGCCACTCGCTCAGTACGATACGCTGCAACTGCCTACGCGCTATTCGC
CACTTTGTTGACTTTTACAGTCGGTCAGCGATTCCCCTCCGGACTTAAGA
TGTTTCTCCATCCACTTGTCACTTGTACTTGTGGCACAATAGGAGCGGTG
GCCTTGCTGGGAGTTGCCACATCCACTCCATTCCCCACCATGTTAGCCAC
ATACTACACTCGCGGCTCTGCTTGGGGTGCCGGTGACATCCTCGCGTCTC
TGCTTGGACCCGCGGTTGTCACGTTTGCTTTCACTATGGATCGTCAGCGC
AAGCTTGCGCTCGCCAGAGTTGTCGAGGTTGTATTTGGGACCTTGTTCGC
CACACTCGCGTCTTTGTTCGGGACCGCTTTCGTCGCTCGTCTGCTCACAC
TGCCGGCAGATACCGCTTTGATTGTGCTACCTCGCACTGTTACAGCACCT
CTTGCGGTAGCAATAGCTGATCTGCTGGGCGCGAATATGGGACTCGCCGC
GAGTGTGGTCGCTTTGACTGGACTTCTCGGCGCAAACATAGCGGCCAGTG
TACTGACCGCCTTCCGCGTGAAGGATCCGGTTGTGAGGGGGCTGTCCGTG
GGAGCATCTGCGCACGGACTGGGCACGGCGGCGTTGAGCGACGAACCTGG
TGCCTTTCCGTTTGCGGCTCTGGCCATGACGTTAGTGGGCATCTTTAGCA
CGATTTTCATTGCATTCCCGCCGCTGCGTGTGATGGTGGTTCGGGTGGCA
GTAGGGCTAGCAACAAAGACCGCTGTACAGTGA

Coding sequence (CDS) from alignment at NODE_651_length_20246_cov_4.368345:17665..19197+

>Gcaud7201.t1 ID=Gcaud7201.t1|Name=Gcaud7201.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1533bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:17665..19197+ (Gracilaria caudata M_176_S67 male)
ATGCATTTGCGAGCGCCCACTTCTTGCTTCGTCGCCGCACCGCCCTCGCT
CAGACGCGTCTCGTCGGCGGCGAGACCCATTGCCGATGTTCGTCCTCGCC
CCTCGGCACCGCTCAACAAGCACTCGGCGTTCATCCCTCACGTAACATCT
GTTCGCTCGCGACATGTATCAGGCCGAAAGCGCACAACTCCCAGCGCCTC
GGCCACTTCCGAGGCGCCGGCTTCGCCCGTGCCGTCTTCGCCAGTCGCTT
CTTTTCTATTGTCTACAGTGCATTGCGTAGTGTCGCTGGGGCTTTTGATC
GTCATTCAACGTGGGGTTGGCAAAGCGCTCGCTGCATTGAACATAGCTTT
CCCTGCGCCATTGGCTTCGATGCTTCTTCTTCTTGCCCTCCTCTCGGTGC
TGCGTGTCTTCTCCTCGCCTTTTGTTGATCGTCTCAATGCTTTGCTTTTC
AACCCTGCTGTAGCCTTTCTCACCCGCTGGCTTGCTGTCTTCTTCGTGCC
CAACTTGGTCATGCTTCCACTGGCGCCCTCCTTACCAAGCGCCCACATAG
CCAAGATTGGCCTTATAATCGTTTGCGGCTTCTTCTTCACCCTTCTATCA
ACGGCTGTCGTATGCATAGCTCTACGATCCATGGTTTCGCTCACCACAGG
AAAGCCCCCGGCATCCCTCTCAGTTACAGCGTCCAAAAGCGCACCCCCGT
CCAATCCACTTATTCTTTGTTTAACAGTTCTTTCTATGTTTTCCTTCGCG
CTCGCCACTCGCTCAGTACGATACGCTGCAACTGCCTACGCGCTATTCGC
CACTTTGTTGACTTTTACAGTCGGTCAGCGATTCCCCTCCGGACTTAAGA
TGTTTCTCCATCCACTTGTCACTTGTACTTGTGGCACAATAGGAGCGGTG
GCCTTGCTGGGAGTTGCCACATCCACTCCATTCCCCACCATGTTAGCCAC
ATACTACACTCGCGGCTCTGCTTGGGGTGCCGGTGACATCCTCGCGTCTC
TGCTTGGACCCGCGGTTGTCACGTTTGCTTTCACTATGGATCGTCAGCGC
AAGCTTGCGCTCGCCAGAGTTGTCGAGGTTGTATTTGGGACCTTGTTCGC
CACACTCGCGTCTTTGTTCGGGACCGCTTTCGTCGCTCGTCTGCTCACAC
TGCCGGCAGATACCGCTTTGATTGTGCTACCTCGCACTGTTACAGCACCT
CTTGCGGTAGCAATAGCTGATCTGCTGGGCGCGAATATGGGACTCGCCGC
GAGTGTGGTCGCTTTGACTGGACTTCTCGGCGCAAACATAGCGGCCAGTG
TACTGACCGCCTTCCGCGTGAAGGATCCGGTTGTGAGGGGGCTGTCCGTG
GGAGCATCTGCGCACGGACTGGGCACGGCGGCGTTGAGCGACGAACCTGG
TGCCTTTCCGTTTGCGGCTCTGGCCATGACGTTAGTGGGCATCTTTAGCA
CGATTTTCATTGCATTCCCGCCGCTGCGTGTGATGGTGGTTCGGGTGGCA
GTAGGGCTAGCAACAAAGACCGCTGTACAGTGA