Gcaud72.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud72.t1
Unique Name	Gcaud72.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_670_length_19947_cov_4.237409	contig	NODE_670_length_19947_cov_4.237409:798..2741 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707605.1
PFAMs	BET,Bromodomain,HATPase_c_3,MBD,WSD
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11721
Evalue	1.36e-28
EggNOG OGs	COG5076@1\|root,KOG1474@2759\|Eukaryota
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko01001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud72	Gcaud72	Gracilaria caudata M_176_S67 male	gene	NODE_670_length_19947_cov_4.237409 798..2741 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud72.t1.stop1	Gcaud72.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_670_length_19947_cov_4.237409 798..800 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud72.t1.CDS1	Gcaud72.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_670_length_19947_cov_4.237409 798..2741 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud72.t1.exon1	Gcaud72.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_670_length_19947_cov_4.237409 798..2741 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud72.t1.start1	Gcaud72.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_670_length_19947_cov_4.237409 2739..2741 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud72.t1	Gcaud72.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_670_length_19947_cov_4.237409 798..2741 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_670_length_19947_cov_4.237409:798..2741-
coding sequence from alignment at NODE_670_length_19947_cov_4.237409:798..2741-

mRNA sequence

>Gcaud72.t1 ID=Gcaud72.t1|Name=Gcaud72.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=648bp
MHSEIQPMWEDLPASPCSAASDESAMRITRSSSQSSRPNLLKPRPPSLSL
PDLSKAVDFSLQHEPSSPTTKRARVDNSHRQAQAGFVEATVQCSNQSADF
VAKLNSNADEERRRFLLEKLQAIKSKKAALKATPSTDEDVVLVAEKTNPD
RKSRKSSVRTTRKRKQAPRRRNAKTSRVPSKSPADIPQIINVDDDSALNT
PVKAAKQPSATSAKQPTPQPTRQSSRIRRPRASIDEEPTAKTAPLPTCMS
KCKRLQFCKKLINSFLREPSAGPFSAPVRELWHEAAIPRYSDVIKQPMDL
RTVKKKLNTTEYIEPVKDGILPYRFDVEAFAQDVRLIFRNAMVYNRVGDM
LYNCASRLQDDFNKKLGEGLPPPPSAEEISSKLSKKRSTAGRSRKTKHNG
EVSSRVGDDDVDVICVSAPSGDKPKSSKAARRKAIAAAREVVMHSDPDSM
TRDEMRERLEYLERCRAPVIARTPVAKGAGYLTRAALLYEVDMTFEEKKR
CGDAVTNVPSSKLPALLSIIQKSSQNSDGGSYDEVELDMDKLDNRTMRNI
EAFLENTLPNFKTVRSSSLGREFSCIEEVDEEIYALRERLGSRRKSVEEK
KGRECRQVADKPKSFFDDGKNVNYSSSDSSSDESDSDSSDDSDCDSD*

spliced messenger RNA

>Gcaud72.t1 ID=Gcaud72.t1|Name=Gcaud72.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at NODE_670_length_19947_cov_4.237409:798..2741- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCCGAAATCCAACCAATGTGGGAAGACTTACCAGCTAGTCCATG
TTCGGCCGCCAGCGACGAGTCAGCCATGCGAATCACGCGGTCATCGTCTC
AGTCGTCGCGCCCGAACCTTTTGAAACCTCGCCCACCCTCGCTCTCACTG
CCCGACCTGTCAAAAGCTGTCGACTTTTCGCTTCAACACGAACCTTCTTC
CCCCACTACCAAGCGTGCTCGCGTTGACAACTCGCACCGTCAGGCCCAGG
CTGGTTTTGTCGAAGCCACAGTCCAGTGCTCGAATCAATCCGCCGACTTC
GTTGCAAAGCTCAACAGCAACGCCGACGAAGAGCGTCGCCGTTTTCTTTT
GGAGAAACTACAGGCTATCAAGTCGAAGAAGGCTGCTTTGAAGGCTACGC
CGTCAACCGATGAAGACGTTGTCCTCGTCGCCGAGAAGACAAACCCGGAC
CGGAAGAGCCGCAAGTCCTCTGTGCGAACAACACGAAAGAGGAAGCAAGC
CCCGCGCCGGCGAAACGCCAAGACGTCTCGTGTACCTTCTAAGTCACCCG
CCGACATCCCTCAGATAATTAATGTGGATGACGATTCCGCGCTTAATACC
CCCGTCAAGGCTGCGAAGCAACCGTCTGCCACTTCTGCGAAGCAGCCTAC
CCCTCAACCTACTCGCCAATCTTCGCGTATTCGCAGACCAAGGGCTTCTA
TTGACGAAGAGCCAACTGCGAAGACCGCACCCTTACCTACGTGCATGTCA
AAGTGTAAGAGATTACAATTTTGCAAGAAACTGATAAACTCCTTCTTGCG
TGAACCTTCAGCCGGCCCATTCTCTGCCCCTGTCAGGGAACTATGGCATG
AGGCGGCCATCCCGCGCTACTCTGATGTTATCAAGCAGCCCATGGACTTG
CGTACTGTTAAGAAGAAGCTTAACACTACTGAGTACATCGAACCTGTCAA
GGATGGTATTCTACCTTATCGCTTTGATGTCGAAGCCTTTGCGCAAGACG
TACGTTTGATATTTAGGAATGCTATGGTTTATAATAGGGTTGGAGACATG
CTTTACAACTGCGCAAGCAGACTACAAGATGACTTCAACAAAAAGTTAGG
TGAAGGGCTACCGCCACCTCCGTCCGCCGAGGAAATATCCTCGAAATTGT
CTAAGAAGCGCAGCACTGCTGGACGTTCTCGAAAGACGAAGCATAACGGG
GAGGTCTCTTCCAGAGTTGGTGACGATGATGTAGATGTCATATGTGTATC
GGCTCCGAGTGGCGACAAGCCGAAGTCATCCAAAGCAGCCAGGCGTAAGG
CAATCGCTGCAGCCAGGGAAGTTGTGATGCACTCGGATCCTGACAGTATG
ACTCGCGACGAAATGCGCGAGAGGTTAGAGTATTTGGAACGTTGTCGCGC
GCCTGTTATCGCTAGAACTCCAGTGGCCAAGGGTGCCGGGTATTTGACTC
GTGCTGCGCTTCTGTACGAAGTGGACATGACTTTCGAGGAGAAAAAGAGA
TGTGGCGACGCTGTGACAAATGTTCCGTCCAGCAAGTTGCCTGCTCTGCT
TTCTATCATCCAGAAGTCGAGTCAAAATTCGGATGGAGGCTCATACGACG
AGGTAGAGCTGGATATGGATAAGCTCGATAATCGCACAATGCGTAACATT
GAGGCTTTCCTTGAAAACACTCTACCCAACTTTAAGACTGTGAGATCTTC
CTCCCTAGGCCGTGAGTTCAGTTGCATTGAAGAGGTGGACGAGGAGATAT
ATGCTCTTAGAGAACGGCTCGGTAGTAGAAGGAAGAGTGTTGAGGAAAAG
AAAGGCAGAGAGTGTAGGCAGGTGGCGGACAAGCCCAAGTCATTCTTCGA
CGATGGCAAGAACGTGAACTATAGCAGTTCGGATTCGTCCTCTGACGAGT
CGGACTCGGATTCGAGTGATGACAGCGACTGTGACTCAGATTAG

protein sequence of Gcaud72.t1

>Gcaud72.t1 ID=Gcaud72.t1|Name=Gcaud72.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=648bp
MHSEIQPMWEDLPASPCSAASDESAMRITRSSSQSSRPNLLKPRPPSLSL
PDLSKAVDFSLQHEPSSPTTKRARVDNSHRQAQAGFVEATVQCSNQSADF
VAKLNSNADEERRRFLLEKLQAIKSKKAALKATPSTDEDVVLVAEKTNPD
RKSRKSSVRTTRKRKQAPRRRNAKTSRVPSKSPADIPQIINVDDDSALNT
PVKAAKQPSATSAKQPTPQPTRQSSRIRRPRASIDEEPTAKTAPLPTCMS
KCKRLQFCKKLINSFLREPSAGPFSAPVRELWHEAAIPRYSDVIKQPMDL
RTVKKKLNTTEYIEPVKDGILPYRFDVEAFAQDVRLIFRNAMVYNRVGDM
LYNCASRLQDDFNKKLGEGLPPPPSAEEISSKLSKKRSTAGRSRKTKHNG
EVSSRVGDDDVDVICVSAPSGDKPKSSKAARRKAIAAAREVVMHSDPDSM
TRDEMRERLEYLERCRAPVIARTPVAKGAGYLTRAALLYEVDMTFEEKKR
CGDAVTNVPSSKLPALLSIIQKSSQNSDGGSYDEVELDMDKLDNRTMRNI
EAFLENTLPNFKTVRSSSLGREFSCIEEVDEEIYALRERLGSRRKSVEEK
KGRECRQVADKPKSFFDDGKNVNYSSSDSSSDESDSDSSDDSDCDSD*

mRNA from alignment at NODE_670_length_19947_cov_4.237409:798..2741-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud72.t1 ID=Gcaud72.t1|Name=Gcaud72.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at NODE_670_length_19947_cov_4.237409:798..2741- (Gracilaria caudata M_176_S67 male)
ATGCATTCCGAAATCCAACCAATGTGGGAAGACTTACCAGCTAGTCCATG
TTCGGCCGCCAGCGACGAGTCAGCCATGCGAATCACGCGGTCATCGTCTC
AGTCGTCGCGCCCGAACCTTTTGAAACCTCGCCCACCCTCGCTCTCACTG
CCCGACCTGTCAAAAGCTGTCGACTTTTCGCTTCAACACGAACCTTCTTC
CCCCACTACCAAGCGTGCTCGCGTTGACAACTCGCACCGTCAGGCCCAGG
CTGGTTTTGTCGAAGCCACAGTCCAGTGCTCGAATCAATCCGCCGACTTC
GTTGCAAAGCTCAACAGCAACGCCGACGAAGAGCGTCGCCGTTTTCTTTT
GGAGAAACTACAGGCTATCAAGTCGAAGAAGGCTGCTTTGAAGGCTACGC
CGTCAACCGATGAAGACGTTGTCCTCGTCGCCGAGAAGACAAACCCGGAC
CGGAAGAGCCGCAAGTCCTCTGTGCGAACAACACGAAAGAGGAAGCAAGC
CCCGCGCCGGCGAAACGCCAAGACGTCTCGTGTACCTTCTAAGTCACCCG
CCGACATCCCTCAGATAATTAATGTGGATGACGATTCCGCGCTTAATACC
CCCGTCAAGGCTGCGAAGCAACCGTCTGCCACTTCTGCGAAGCAGCCTAC
CCCTCAACCTACTCGCCAATCTTCGCGTATTCGCAGACCAAGGGCTTCTA
TTGACGAAGAGCCAACTGCGAAGACCGCACCCTTACCTACGTGCATGTCA
AAGTGTAAGAGATTACAATTTTGCAAGAAACTGATAAACTCCTTCTTGCG
TGAACCTTCAGCCGGCCCATTCTCTGCCCCTGTCAGGGAACTATGGCATG
AGGCGGCCATCCCGCGCTACTCTGATGTTATCAAGCAGCCCATGGACTTG
CGTACTGTTAAGAAGAAGCTTAACACTACTGAGTACATCGAACCTGTCAA
GGATGGTATTCTACCTTATCGCTTTGATGTCGAAGCCTTTGCGCAAGACG
TACGTTTGATATTTAGGAATGCTATGGTTTATAATAGGGTTGGAGACATG
CTTTACAACTGCGCAAGCAGACTACAAGATGACTTCAACAAAAAGTTAGG
TGAAGGGCTACCGCCACCTCCGTCCGCCGAGGAAATATCCTCGAAATTGT
CTAAGAAGCGCAGCACTGCTGGACGTTCTCGAAAGACGAAGCATAACGGG
GAGGTCTCTTCCAGAGTTGGTGACGATGATGTAGATGTCATATGTGTATC
GGCTCCGAGTGGCGACAAGCCGAAGTCATCCAAAGCAGCCAGGCGTAAGG
CAATCGCTGCAGCCAGGGAAGTTGTGATGCACTCGGATCCTGACAGTATG
ACTCGCGACGAAATGCGCGAGAGGTTAGAGTATTTGGAACGTTGTCGCGC
GCCTGTTATCGCTAGAACTCCAGTGGCCAAGGGTGCCGGGTATTTGACTC
GTGCTGCGCTTCTGTACGAAGTGGACATGACTTTCGAGGAGAAAAAGAGA
TGTGGCGACGCTGTGACAAATGTTCCGTCCAGCAAGTTGCCTGCTCTGCT
TTCTATCATCCAGAAGTCGAGTCAAAATTCGGATGGAGGCTCATACGACG
AGGTAGAGCTGGATATGGATAAGCTCGATAATCGCACAATGCGTAACATT
GAGGCTTTCCTTGAAAACACTCTACCCAACTTTAAGACTGTGAGATCTTC
CTCCCTAGGCCGTGAGTTCAGTTGCATTGAAGAGGTGGACGAGGAGATAT
ATGCTCTTAGAGAACGGCTCGGTAGTAGAAGGAAGAGTGTTGAGGAAAAG
AAAGGCAGAGAGTGTAGGCAGGTGGCGGACAAGCCCAAGTCATTCTTCGA
CGATGGCAAGAACGTGAACTATAGCAGTTCGGATTCGTCCTCTGACGAGT
CGGACTCGGATTCGAGTGATGACAGCGACTGTGACTCAGATTAG

Coding sequence (CDS) from alignment at NODE_670_length_19947_cov_4.237409:798..2741-

>Gcaud72.t1 ID=Gcaud72.t1|Name=Gcaud72.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1944bp|location=Sequence derived from alignment at NODE_670_length_19947_cov_4.237409:798..2741- (Gracilaria caudata M_176_S67 male)
ATGCATTCCGAAATCCAACCAATGTGGGAAGACTTACCAGCTAGTCCATG
TTCGGCCGCCAGCGACGAGTCAGCCATGCGAATCACGCGGTCATCGTCTC
AGTCGTCGCGCCCGAACCTTTTGAAACCTCGCCCACCCTCGCTCTCACTG
CCCGACCTGTCAAAAGCTGTCGACTTTTCGCTTCAACACGAACCTTCTTC
CCCCACTACCAAGCGTGCTCGCGTTGACAACTCGCACCGTCAGGCCCAGG
CTGGTTTTGTCGAAGCCACAGTCCAGTGCTCGAATCAATCCGCCGACTTC
GTTGCAAAGCTCAACAGCAACGCCGACGAAGAGCGTCGCCGTTTTCTTTT
GGAGAAACTACAGGCTATCAAGTCGAAGAAGGCTGCTTTGAAGGCTACGC
CGTCAACCGATGAAGACGTTGTCCTCGTCGCCGAGAAGACAAACCCGGAC
CGGAAGAGCCGCAAGTCCTCTGTGCGAACAACACGAAAGAGGAAGCAAGC
CCCGCGCCGGCGAAACGCCAAGACGTCTCGTGTACCTTCTAAGTCACCCG
CCGACATCCCTCAGATAATTAATGTGGATGACGATTCCGCGCTTAATACC
CCCGTCAAGGCTGCGAAGCAACCGTCTGCCACTTCTGCGAAGCAGCCTAC
CCCTCAACCTACTCGCCAATCTTCGCGTATTCGCAGACCAAGGGCTTCTA
TTGACGAAGAGCCAACTGCGAAGACCGCACCCTTACCTACGTGCATGTCA
AAGTGTAAGAGATTACAATTTTGCAAGAAACTGATAAACTCCTTCTTGCG
TGAACCTTCAGCCGGCCCATTCTCTGCCCCTGTCAGGGAACTATGGCATG
AGGCGGCCATCCCGCGCTACTCTGATGTTATCAAGCAGCCCATGGACTTG
CGTACTGTTAAGAAGAAGCTTAACACTACTGAGTACATCGAACCTGTCAA
GGATGGTATTCTACCTTATCGCTTTGATGTCGAAGCCTTTGCGCAAGACG
TACGTTTGATATTTAGGAATGCTATGGTTTATAATAGGGTTGGAGACATG
CTTTACAACTGCGCAAGCAGACTACAAGATGACTTCAACAAAAAGTTAGG
TGAAGGGCTACCGCCACCTCCGTCCGCCGAGGAAATATCCTCGAAATTGT
CTAAGAAGCGCAGCACTGCTGGACGTTCTCGAAAGACGAAGCATAACGGG
GAGGTCTCTTCCAGAGTTGGTGACGATGATGTAGATGTCATATGTGTATC
GGCTCCGAGTGGCGACAAGCCGAAGTCATCCAAAGCAGCCAGGCGTAAGG
CAATCGCTGCAGCCAGGGAAGTTGTGATGCACTCGGATCCTGACAGTATG
ACTCGCGACGAAATGCGCGAGAGGTTAGAGTATTTGGAACGTTGTCGCGC
GCCTGTTATCGCTAGAACTCCAGTGGCCAAGGGTGCCGGGTATTTGACTC
GTGCTGCGCTTCTGTACGAAGTGGACATGACTTTCGAGGAGAAAAAGAGA
TGTGGCGACGCTGTGACAAATGTTCCGTCCAGCAAGTTGCCTGCTCTGCT
TTCTATCATCCAGAAGTCGAGTCAAAATTCGGATGGAGGCTCATACGACG
AGGTAGAGCTGGATATGGATAAGCTCGATAATCGCACAATGCGTAACATT
GAGGCTTTCCTTGAAAACACTCTACCCAACTTTAAGACTGTGAGATCTTC
CTCCCTAGGCCGTGAGTTCAGTTGCATTGAAGAGGTGGACGAGGAGATAT
ATGCTCTTAGAGAACGGCTCGGTAGTAGAAGGAAGAGTGTTGAGGAAAAG
AAAGGCAGAGAGTGTAGGCAGGTGGCGGACAAGCCCAAGTCATTCTTCGA
CGATGGCAAGAACGTGAACTATAGCAGTTCGGATTCGTCCTCTGACGAGT
CGGACTCGGATTCGAGTGATGACAGCGACTGTGACTCAGATTAG