Gcaud7196.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7196.t1
Unique NameGcaud7196.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_651_length_20246_cov_4.368345contigNODE_651_length_20246_cov_4.368345:8841..9959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010060847.1
Preferred nameABA3
PFAMsAminotran_5,MOSC,MOSC_N
Max annot lvl35493|Streptophyta
KEGG koko:K15631
KEGG ReactionR11583
KEGG Pathwayko00790,map00790
GOsGO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006464,GO:0006605,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006970,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008265,GO:0008299,GO:0008610,GO:0009000,GO:0009058,GO:0009266,GO:0009408,GO:0009409,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009687,GO:0009688,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009743,GO:0009755,GO:0009756,GO:0009987,GO:0010033,GO:0010118,GO:0010182,GO:0015031,GO:0015833,GO:0016053,GO:0016106,GO:0016114,GO:0016740,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0017038,GO:0018315,GO:0019538,GO:0019752,GO:0023052,GO:0032787,GO:0032870,GO:0033036,GO:0033365,GO:0034613,GO:0036211,GO:0042040,GO:0042221,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043288,GO:0043289,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0045036,GO:0045037,GO:0045184,GO:0046165,GO:0046394,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0065002,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0072330,GO:0072594,GO:0072596,GO:0072598,GO:0098542,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1901701,GO:1902644,GO:1902645
Evalue9.77e-12
EggNOG OGsCOG0520@1|root,KOG2142@2759|Eukaryota,37PBN@33090|Viridiplantae,3G957@35493|Streptophyta
EC2.8.1.9
DescriptionSulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7196Gcaud7196Gracilaria caudata M_176_S67 malegeneNODE_651_length_20246_cov_4.368345 8841..11156 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7196.t1.stop1Gcaud7196.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_651_length_20246_cov_4.368345 8841..8843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7196.t1.CDS1Gcaud7196.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_651_length_20246_cov_4.368345 8841..9959 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7196.t1.exon1Gcaud7196.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_651_length_20246_cov_4.368345 8841..9959 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7196.t1.start1Gcaud7196.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_651_length_20246_cov_4.368345 9957..9959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7196.t1Gcaud7196.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_651_length_20246_cov_4.368345 8841..9959 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7196.t1 ID=Gcaud7196.t1|Name=Gcaud7196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=373bp
MDLIDGKPTGVVRFSFGWGSTKFDADAIVCILRTYLVSNIYQSSLNACRT
SEKFLATSLYIYPVKGCEGSAVDVLYVDGIGGVLGDRAFGIEDFESKRIL
GVRQSHELTNISCSYDENWRTLVIKTSRTQSEKLGIKECITVDVSELPEL
RTHQNEYQRLLKDERINENCECLSKRTVDKVGGERVHTWLSVVLDRRVHL
VRLKSGIEREKANVLIATKSELEQLGKESGVENINVLRSAIRPNVIVQRK
SNIVSVTDFCEPPPLGVCLVNQLDRFWNNRVMLKRTRSCTRCQVVNIIAK
AYGVESSGEPLRAIVRLSRIKKDRGVVFGSLAKFMGISFGAPIGEKGLDE
VNMRNQYKLSQGDELQGDYSNG*
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spliced messenger RNA

>Gcaud7196.t1 ID=Gcaud7196.t1|Name=Gcaud7196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:8841..9959- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTGATAGACGGAAAGCCGACTGGGGTAGTGAGATTCTCCTTTGG
TTGGGGTAGTACGAAATTCGACGCAGACGCAATTGTGTGTATCCTACGAA
CATACTTGGTTTCAAATATATATCAATCTTCGTTAAATGCGTGCAGAACA
TCCGAGAAGTTTTTAGCCACAAGTCTTTACATTTATCCCGTTAAAGGATG
TGAGGGAAGCGCTGTAGATGTTCTTTATGTGGATGGGATAGGTGGCGTGC
TTGGAGATAGAGCCTTCGGCATTGAAGACTTTGAGTCGAAGAGAATTCTG
GGCGTTCGTCAAAGCCATGAACTGACCAACATCTCATGTTCTTATGATGA
GAACTGGAGGACCCTGGTGATCAAAACATCTCGAACACAAAGTGAGAAAC
TTGGCATCAAAGAATGTATAACAGTTGATGTGAGTGAACTACCGGAACTA
AGGACGCATCAAAATGAGTACCAGCGGCTTTTGAAGGACGAACGCATTAA
TGAGAACTGCGAATGCTTGTCTAAACGGACTGTAGACAAAGTCGGTGGTG
AACGGGTTCATACGTGGTTAAGTGTTGTACTAGATCGACGCGTACATTTA
GTGCGATTGAAGTCCGGCATTGAACGAGAAAAAGCAAATGTTCTTATCGC
CACAAAGTCTGAACTTGAACAACTTGGCAAGGAGTCTGGTGTAGAAAACA
TAAATGTCCTTCGGTCTGCAATTCGCCCAAACGTTATCGTGCAGAGAAAA
AGTAATATCGTGTCCGTAACTGACTTTTGTGAGCCTCCTCCCCTGGGTGT
GTGTTTGGTCAATCAGCTGGACCGTTTTTGGAACAATAGAGTCATGTTGA
AACGCACTAGGAGCTGTACAAGATGTCAAGTAGTAAACATAATAGCCAAA
GCGTACGGGGTAGAAAGCTCAGGAGAACCATTGCGGGCGATCGTGAGGTT
AAGTCGTATCAAGAAAGATCGAGGAGTGGTTTTCGGAAGTCTAGCTAAGT
TCATGGGGATTTCCTTTGGTGCTCCAATAGGCGAAAAAGGGCTGGATGAA
GTCAATATGAGGAACCAGTACAAGCTAAGCCAAGGTGACGAACTCCAGGG
CGATTATTCTAATGGCTAA
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protein sequence of Gcaud7196.t1

>Gcaud7196.t1 ID=Gcaud7196.t1|Name=Gcaud7196.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MDLIDGKPTGVVRFSFGWGSTKFDADAIVCILRTYLVSNIYQSSLNACRT
SEKFLATSLYIYPVKGCEGSAVDVLYVDGIGGVLGDRAFGIEDFESKRIL
GVRQSHELTNISCSYDENWRTLVIKTSRTQSEKLGIKECITVDVSELPEL
RTHQNEYQRLLKDERINENCECLSKRTVDKVGGERVHTWLSVVLDRRVHL
VRLKSGIEREKANVLIATKSELEQLGKESGVENINVLRSAIRPNVIVQRK
SNIVSVTDFCEPPPLGVCLVNQLDRFWNNRVMLKRTRSCTRCQVVNIIAK
AYGVESSGEPLRAIVRLSRIKKDRGVVFGSLAKFMGISFGAPIGEKGLDE
VNMRNQYKLSQGDELQGDYSNG*
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mRNA from alignment at NODE_651_length_20246_cov_4.368345:8841..9959-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7196.t1 ID=Gcaud7196.t1|Name=Gcaud7196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:8841..9959- (Gracilaria caudata M_176_S67 male)
ATGGACTTGATAGACGGAAAGCCGACTGGGGTAGTGAGATTCTCCTTTGG
TTGGGGTAGTACGAAATTCGACGCAGACGCAATTGTGTGTATCCTACGAA
CATACTTGGTTTCAAATATATATCAATCTTCGTTAAATGCGTGCAGAACA
TCCGAGAAGTTTTTAGCCACAAGTCTTTACATTTATCCCGTTAAAGGATG
TGAGGGAAGCGCTGTAGATGTTCTTTATGTGGATGGGATAGGTGGCGTGC
TTGGAGATAGAGCCTTCGGCATTGAAGACTTTGAGTCGAAGAGAATTCTG
GGCGTTCGTCAAAGCCATGAACTGACCAACATCTCATGTTCTTATGATGA
GAACTGGAGGACCCTGGTGATCAAAACATCTCGAACACAAAGTGAGAAAC
TTGGCATCAAAGAATGTATAACAGTTGATGTGAGTGAACTACCGGAACTA
AGGACGCATCAAAATGAGTACCAGCGGCTTTTGAAGGACGAACGCATTAA
TGAGAACTGCGAATGCTTGTCTAAACGGACTGTAGACAAAGTCGGTGGTG
AACGGGTTCATACGTGGTTAAGTGTTGTACTAGATCGACGCGTACATTTA
GTGCGATTGAAGTCCGGCATTGAACGAGAAAAAGCAAATGTTCTTATCGC
CACAAAGTCTGAACTTGAACAACTTGGCAAGGAGTCTGGTGTAGAAAACA
TAAATGTCCTTCGGTCTGCAATTCGCCCAAACGTTATCGTGCAGAGAAAA
AGTAATATCGTGTCCGTAACTGACTTTTGTGAGCCTCCTCCCCTGGGTGT
GTGTTTGGTCAATCAGCTGGACCGTTTTTGGAACAATAGAGTCATGTTGA
AACGCACTAGGAGCTGTACAAGATGTCAAGTAGTAAACATAATAGCCAAA
GCGTACGGGGTAGAAAGCTCAGGAGAACCATTGCGGGCGATCGTGAGGTT
AAGTCGTATCAAGAAAGATCGAGGAGTGGTTTTCGGAAGTCTAGCTAAGT
TCATGGGGATTTCCTTTGGTGCTCCAATAGGCGAAAAAGGGCTGGATGAA
GTCAATATGAGGAACCAGTACAAGCTAAGCCAAGGTGACGAACTCCAGGG
CGATTATTCTAATGGCTAA
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Coding sequence (CDS) from alignment at NODE_651_length_20246_cov_4.368345:8841..9959-

>Gcaud7196.t1 ID=Gcaud7196.t1|Name=Gcaud7196.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1119bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:8841..9959- (Gracilaria caudata M_176_S67 male)
ATGGACTTGATAGACGGAAAGCCGACTGGGGTAGTGAGATTCTCCTTTGG
TTGGGGTAGTACGAAATTCGACGCAGACGCAATTGTGTGTATCCTACGAA
CATACTTGGTTTCAAATATATATCAATCTTCGTTAAATGCGTGCAGAACA
TCCGAGAAGTTTTTAGCCACAAGTCTTTACATTTATCCCGTTAAAGGATG
TGAGGGAAGCGCTGTAGATGTTCTTTATGTGGATGGGATAGGTGGCGTGC
TTGGAGATAGAGCCTTCGGCATTGAAGACTTTGAGTCGAAGAGAATTCTG
GGCGTTCGTCAAAGCCATGAACTGACCAACATCTCATGTTCTTATGATGA
GAACTGGAGGACCCTGGTGATCAAAACATCTCGAACACAAAGTGAGAAAC
TTGGCATCAAAGAATGTATAACAGTTGATGTGAGTGAACTACCGGAACTA
AGGACGCATCAAAATGAGTACCAGCGGCTTTTGAAGGACGAACGCATTAA
TGAGAACTGCGAATGCTTGTCTAAACGGACTGTAGACAAAGTCGGTGGTG
AACGGGTTCATACGTGGTTAAGTGTTGTACTAGATCGACGCGTACATTTA
GTGCGATTGAAGTCCGGCATTGAACGAGAAAAAGCAAATGTTCTTATCGC
CACAAAGTCTGAACTTGAACAACTTGGCAAGGAGTCTGGTGTAGAAAACA
TAAATGTCCTTCGGTCTGCAATTCGCCCAAACGTTATCGTGCAGAGAAAA
AGTAATATCGTGTCCGTAACTGACTTTTGTGAGCCTCCTCCCCTGGGTGT
GTGTTTGGTCAATCAGCTGGACCGTTTTTGGAACAATAGAGTCATGTTGA
AACGCACTAGGAGCTGTACAAGATGTCAAGTAGTAAACATAATAGCCAAA
GCGTACGGGGTAGAAAGCTCAGGAGAACCATTGCGGGCGATCGTGAGGTT
AAGTCGTATCAAGAAAGATCGAGGAGTGGTTTTCGGAAGTCTAGCTAAGT
TCATGGGGATTTCCTTTGGTGCTCCAATAGGCGAAAAAGGGCTGGATGAA
GTCAATATGAGGAACCAGTACAAGCTAAGCCAAGGTGACGAACTCCAGGG
CGATTATTCTAATGGCTAA
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