Gcaud7193.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7193.t1
Unique Name	Gcaud7193.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_651_length_20246_cov_4.368345	contig	NODE_651_length_20246_cov_4.368345:3993..4793 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7193	Gcaud7193	Gracilaria caudata M_176_S67 male	gene	NODE_651_length_20246_cov_4.368345 3993..4793 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7193.t1.stop1	Gcaud7193.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_651_length_20246_cov_4.368345 3993..3995 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7193.t1.CDS1	Gcaud7193.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_651_length_20246_cov_4.368345 3993..4793 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7193.t1.exon1	Gcaud7193.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_651_length_20246_cov_4.368345 3993..4793 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7193.t1.start1	Gcaud7193.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_651_length_20246_cov_4.368345 4791..4793 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7193.t1	Gcaud7193.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_651_length_20246_cov_4.368345 3993..4793 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_651_length_20246_cov_4.368345:3993..4793-
coding sequence from alignment at NODE_651_length_20246_cov_4.368345:3993..4793-

mRNA sequence

>Gcaud7193.t1 ID=Gcaud7193.t1|Name=Gcaud7193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
LPPTMATPTAQRRLYTREKLLSLRHNRQLPPHLMRTRCAAFLPTVSPPNP
NPAIRRPSPPPSPPPGFAHVQIPLQASPPRSPSPPPEDRVRIRIARAPYM
PDNFATRKAFHSRPAPSASPLTSQEIDALFDTSSSSPFENFTARLTSSSN
AAHGVARFTHFREIEPRNQPVPTTKIIEPSKAPQPPDDQLDDSVLAFFEA
VRARARNDDPQDSHVIHETVSRETRSVPNTLTNAHKVAPAQLSHSAKSDV
IDLQNWFARLAQQTTQ*

spliced messenger RNA

>Gcaud7193.t1 ID=Gcaud7193.t1|Name=Gcaud7193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:3993..4793- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCACCCACCATGGCCACCCCCACAGCGCAGCGCCGTCTCTATACCCG
CGAGAAGCTGCTCTCGCTCCGTCACAATCGCCAGCTCCCTCCACATCTAA
TGCGCACCCGCTGCGCCGCCTTTCTCCCCACCGTCTCACCTCCCAACCCA
AACCCCGCAATCAGACGTCCGTCACCGCCACCCTCCCCTCCCCCCGGATT
TGCGCACGTCCAGATTCCGTTGCAAGCATCCCCCCCACGCTCCCCGTCGC
CCCCTCCCGAGGATCGAGTCCGCATCCGCATCGCACGCGCCCCGTACATG
CCGGATAACTTTGCCACGCGCAAGGCGTTTCATTCTCGACCCGCTCCATC
TGCCTCACCTCTCACATCACAAGAAATCGACGCCCTGTTTGATACGTCGT
CATCTTCTCCGTTCGAAAACTTCACCGCGCGTCTCACCAGCTCCAGCAAC
GCCGCCCACGGCGTTGCAAGATTCACACATTTCCGCGAGATAGAACCTCG
GAACCAACCAGTTCCTACCACGAAGATTATCGAGCCTTCAAAAGCGCCTC
AGCCTCCGGATGACCAACTTGACGATTCGGTGCTAGCGTTTTTCGAAGCC
GTGCGTGCACGCGCCAGGAATGATGATCCTCAAGACTCACATGTTATTCA
TGAAACCGTCTCTCGTGAAACGCGTTCTGTACCCAATACACTTACCAATG
CGCACAAAGTTGCGCCCGCTCAACTCAGTCATTCCGCCAAGTCTGATGTC
ATCGATCTGCAGAACTGGTTTGCTCGCCTCGCACAGCAGACTACGCAATG
A

protein sequence of Gcaud7193.t1

>Gcaud7193.t1 ID=Gcaud7193.t1|Name=Gcaud7193.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
LPPTMATPTAQRRLYTREKLLSLRHNRQLPPHLMRTRCAAFLPTVSPPNP
NPAIRRPSPPPSPPPGFAHVQIPLQASPPRSPSPPPEDRVRIRIARAPYM
PDNFATRKAFHSRPAPSASPLTSQEIDALFDTSSSSPFENFTARLTSSSN
AAHGVARFTHFREIEPRNQPVPTTKIIEPSKAPQPPDDQLDDSVLAFFEA
VRARARNDDPQDSHVIHETVSRETRSVPNTLTNAHKVAPAQLSHSAKSDV
IDLQNWFARLAQQTTQ*

mRNA from alignment at NODE_651_length_20246_cov_4.368345:3993..4793-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7193.t1 ID=Gcaud7193.t1|Name=Gcaud7193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:3993..4793- (Gracilaria caudata M_176_S67 male)
CTGCCACCCACCATGGCCACCCCCACAGCGCAGCGCCGTCTCTATACCCG
CGAGAAGCTGCTCTCGCTCCGTCACAATCGCCAGCTCCCTCCACATCTAA
TGCGCACCCGCTGCGCCGCCTTTCTCCCCACCGTCTCACCTCCCAACCCA
AACCCCGCAATCAGACGTCCGTCACCGCCACCCTCCCCTCCCCCCGGATT
TGCGCACGTCCAGATTCCGTTGCAAGCATCCCCCCCACGCTCCCCGTCGC
CCCCTCCCGAGGATCGAGTCCGCATCCGCATCGCACGCGCCCCGTACATG
CCGGATAACTTTGCCACGCGCAAGGCGTTTCATTCTCGACCCGCTCCATC
TGCCTCACCTCTCACATCACAAGAAATCGACGCCCTGTTTGATACGTCGT
CATCTTCTCCGTTCGAAAACTTCACCGCGCGTCTCACCAGCTCCAGCAAC
GCCGCCCACGGCGTTGCAAGATTCACACATTTCCGCGAGATAGAACCTCG
GAACCAACCAGTTCCTACCACGAAGATTATCGAGCCTTCAAAAGCGCCTC
AGCCTCCGGATGACCAACTTGACGATTCGGTGCTAGCGTTTTTCGAAGCC
GTGCGTGCACGCGCCAGGAATGATGATCCTCAAGACTCACATGTTATTCA
TGAAACCGTCTCTCGTGAAACGCGTTCTGTACCCAATACACTTACCAATG
CGCACAAAGTTGCGCCCGCTCAACTCAGTCATTCCGCCAAGTCTGATGTC
ATCGATCTGCAGAACTGGTTTGCTCGCCTCGCACAGCAGACTACGCAATG
A

Coding sequence (CDS) from alignment at NODE_651_length_20246_cov_4.368345:3993..4793-

>Gcaud7193.t1 ID=Gcaud7193.t1|Name=Gcaud7193.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=801bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:3993..4793- (Gracilaria caudata M_176_S67 male)
CTGCCACCCACCATGGCCACCCCCACAGCGCAGCGCCGTCTCTATACCCG
CGAGAAGCTGCTCTCGCTCCGTCACAATCGCCAGCTCCCTCCACATCTAA
TGCGCACCCGCTGCGCCGCCTTTCTCCCCACCGTCTCACCTCCCAACCCA
AACCCCGCAATCAGACGTCCGTCACCGCCACCCTCCCCTCCCCCCGGATT
TGCGCACGTCCAGATTCCGTTGCAAGCATCCCCCCCACGCTCCCCGTCGC
CCCCTCCCGAGGATCGAGTCCGCATCCGCATCGCACGCGCCCCGTACATG
CCGGATAACTTTGCCACGCGCAAGGCGTTTCATTCTCGACCCGCTCCATC
TGCCTCACCTCTCACATCACAAGAAATCGACGCCCTGTTTGATACGTCGT
CATCTTCTCCGTTCGAAAACTTCACCGCGCGTCTCACCAGCTCCAGCAAC
GCCGCCCACGGCGTTGCAAGATTCACACATTTCCGCGAGATAGAACCTCG
GAACCAACCAGTTCCTACCACGAAGATTATCGAGCCTTCAAAAGCGCCTC
AGCCTCCGGATGACCAACTTGACGATTCGGTGCTAGCGTTTTTCGAAGCC
GTGCGTGCACGCGCCAGGAATGATGATCCTCAAGACTCACATGTTATTCA
TGAAACCGTCTCTCGTGAAACGCGTTCTGTACCCAATACACTTACCAATG
CGCACAAAGTTGCGCCCGCTCAACTCAGTCATTCCGCCAAGTCTGATGTC
ATCGATCTGCAGAACTGGTTTGCTCGCCTCGCACAGCAGACTACGCAATG
A