Gcaud7192.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7192.t1
Unique Name	Gcaud7192.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	777

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_651_length_20246_cov_4.368345	contig	NODE_651_length_20246_cov_4.368345:1252..3582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM179CT
PFAMs	CitMHS,Na_sulph_symp,TrkA_C
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008272,GO:0008509,GO:0015075,GO:0015103,GO:0015116,GO:0015318,GO:0015698,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902358
Evalue	1.58e-176
EggNOG OGs	COG0471@1\|root,2QPZM@2759\|Eukaryota
Description	potassium ion transport
COG category	P
BiGG Reaction	iRC1080.CRv4_Au5_s10_g542_t1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7192	Gcaud7192	Gracilaria caudata M_176_S67 male	gene	NODE_651_length_20246_cov_4.368345 1252..3582 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7192.t1.start1	Gcaud7192.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_651_length_20246_cov_4.368345 1252..1254 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7192.t1.CDS1	Gcaud7192.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_651_length_20246_cov_4.368345 1252..3582 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7192.t1.exon1	Gcaud7192.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_651_length_20246_cov_4.368345 1252..3582 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7192.t1.stop1	Gcaud7192.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_651_length_20246_cov_4.368345 3580..3582 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7192.t1	Gcaud7192.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_651_length_20246_cov_4.368345 1252..3582 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_651_length_20246_cov_4.368345:1252..3582+
coding sequence from alignment at NODE_651_length_20246_cov_4.368345:1252..3582+

mRNA sequence

>Gcaud7192.t1 ID=Gcaud7192.t1|Name=Gcaud7192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp
MAHRRAGSTATTATPPNEPDTAPRRSRNASPSSTRLSSRHRSPLSRPLSS
GNIDFQVIAIPEQPDCVPEHPISEQQFLERALQTDDPPKAPPPPPLPNPR
SSTSVDNPYYYGNPAKYNPKFSDLRNDLGFSRAIAKWLARFLKRNWGILT
FMLLIAIGLAMLGIFAFKPLSWEAWVAFAILTITLCLLITNALPTAVSML
LGLTLMLVLNIVTPARGIEGFANTGVMSVAILFVVAEGIQRTSVLLPLFR
IVLGKPRFVWEAQLRVMLPVALISAFLNNTPVVAMLIPVVQSWSRRANFP
ISKLLMPLNDAAILGGTLTLLGTSTNLVVNGLAIKTRILGTVDGTEDGVG
KGLPIFGITPVGALMLVTGIIYMVFFSRCLLRDRGQTGVDSIIRNPREYT
VALLVQQRSPIVGDTVQEAGLRHLQGLYLVEVTRADGTLIPAVAPDTKIE
AGDTLLFAGVVETVTELYHIPGLVPATGQSQKMKIERHHRRLVELVIASS
SMLVGKTAKESKFRSRFQAAIIAVHRQGEHVKEKIADISLRAGDTLLVET
GSEFTLRFGKDSNFALVSEVSGSQPPREDRLHMLIAASIAVTMVSLATAG
VVPLMSAAAGASFILIATGCLSLTNAARAVDMSVIITIAASFGISNGMED
TGAAEQLANFIVDIFRPIGNLGLLFGIYVGTALLSSVITNNAAVSLMFPV
ISNILKSDDTDIDALATLYTLMIGASASFSTPIGYQTNLMVHGPGGYTFM
DWVIFGVPMQLLLGVVGVLSINAFFS*

spliced messenger RNA

>Gcaud7192.t1 ID=Gcaud7192.t1|Name=Gcaud7192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2331bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:1252..3582+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCATCGTCGTGCGGGCTCGACGGCTACTACTGCCACGCCGCCCAA
CGAGCCGGATACTGCGCCGCGTCGCTCGCGCAATGCTTCGCCGTCATCGA
CCAGATTGTCGTCGAGACATCGCTCGCCGCTGTCGCGTCCGCTCTCGTCC
GGTAATATCGACTTTCAGGTCATTGCCATTCCCGAGCAACCTGACTGTGT
CCCAGAGCACCCCATCTCGGAGCAGCAGTTTCTGGAGCGCGCACTGCAGA
CTGATGACCCGCCTAAAGCGCCGCCGCCACCGCCGTTGCCCAATCCGCGC
TCCAGTACTAGCGTGGACAACCCGTACTACTACGGAAACCCAGCAAAGTA
CAACCCCAAGTTCTCCGACCTACGCAATGACCTGGGCTTCTCCAGAGCCA
TTGCGAAATGGCTCGCGCGCTTCCTCAAGCGCAACTGGGGCATTCTTACT
TTCATGCTCCTGATTGCCATCGGCTTGGCCATGTTGGGCATCTTTGCCTT
CAAGCCGCTTTCGTGGGAAGCCTGGGTCGCTTTTGCCATTCTCACCATCA
CTCTGTGCTTACTCATCACCAATGCACTCCCCACCGCCGTGTCCATGTTG
CTTGGCCTCACCTTAATGCTCGTGCTCAACATCGTTACGCCCGCGCGTGG
AATTGAAGGCTTCGCCAACACGGGCGTCATGTCTGTCGCCATTCTGTTCG
TCGTGGCGGAGGGTATTCAGCGAACTTCTGTGCTACTGCCGCTGTTTCGC
ATTGTGTTGGGCAAACCCAGATTTGTGTGGGAGGCTCAGCtgcgcgtcat
gcttccagtcgctcttatttcagcctttcttaacaacacccccgtggtag
ccatgcttattccggttgtacaatcctggtcacgccgcgctaacttccca
atatctaaactgctcatgccactcaacgatgccgccattcttggtggcac
cctgactttgctcggtaccagtaccaatcttgtcgtcaatggtctcgcca
tcaagacaaggatccttggaaccgttgacggcaccgaggatggtgttgga
aagggcttgcccatctttggtattactccagttggtgcgctcatgctcgt
tacaggcatcatctacatggtattcttctcgcgctgcttgttgcgcgata
gaggtcaaactggtgtcgactcaattattcgcaatccCAGAGAATATACT
GTTGCATTGCTCGTGCAACAACGATCGCCCATTGTGGGCGACACCGTGCA
GGAGGCTGGTTTACGTCATCTGCAAGGCCTTTACTTGGTCGAAGTCACCC
GTGCGGATGGTACGCTCATCCCGGCTGTGGCCCCAGACACCAAGATTGAA
GCGGGTGACACCCTACTCTTTGCTGGAGTTGTGGAAACTGTCACAGAGCT
GTATCACATCCCTGGACTTGTCCCCGCTACAGGTCAATCACAAAAGATGA
AGATCGAGCGCCATCATCGCAGATTGGTCGAGCTAGTTATCGCGTCATCC
TCCATGctcgtggggaagactgccaaggagtccaagttccgatcccgttt
tcaagccgccattattgcggtgcatagacagggagaacacgtgaaggaga
agattgctgacatcagtttgagggcgggagatactttgctggtcgaaact
gggtctgaattcacacttagatttggaaaggactccaacttcgcgcttgt
atctgaagtttctgggtcgcagccgcccagagaggatcgactacacatgc
tcatcgcagctagtattgccgtcacaatggtgtcgctggccacagccgga
gtcgtaccgctgatgagcgctgccgctggtgcgtcgttcattctaattgc
tacagggtgcctctcacttaccaacgccgccagagcggttgatatgtcgg
tcattattacgattgccgccagtttcggtatatcgaacggcatggaagat
accggagcggcagaacaattggcaaacttcatcgtggacatcttcagacc
tatcggcaatttgggtctgctgtttggcatatatgtcggaaccgccttgt
tgtcatcagtgatcacaaacaacgctgctgtgtcgcttatgttccctgtg
atcagtaacattttaaagTCAGACGACACTGACATCGATGCTCTGGCAAC
TTTGTACACGCTCATGATTGGCGCTTCTGCAAGTTTCTCCACGCCAATTG
GGTACCAGACAAATCTTATGGTACATGGTCCTGGCGGTTACACATTCATG
GACTGGGTCATTTTTGGAGTGCCTATGCAACTATTGCTGGGTGTTGTTGG
TGTTCTGTCCATAAACGCTTTCTTCTCGTAG

protein sequence of Gcaud7192.t1

>Gcaud7192.t1 ID=Gcaud7192.t1|Name=Gcaud7192.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=777bp
MAHRRAGSTATTATPPNEPDTAPRRSRNASPSSTRLSSRHRSPLSRPLSS
GNIDFQVIAIPEQPDCVPEHPISEQQFLERALQTDDPPKAPPPPPLPNPR
SSTSVDNPYYYGNPAKYNPKFSDLRNDLGFSRAIAKWLARFLKRNWGILT
FMLLIAIGLAMLGIFAFKPLSWEAWVAFAILTITLCLLITNALPTAVSML
LGLTLMLVLNIVTPARGIEGFANTGVMSVAILFVVAEGIQRTSVLLPLFR
IVLGKPRFVWEAQLRVMLPVALISAFLNNTPVVAMLIPVVQSWSRRANFP
ISKLLMPLNDAAILGGTLTLLGTSTNLVVNGLAIKTRILGTVDGTEDGVG
KGLPIFGITPVGALMLVTGIIYMVFFSRCLLRDRGQTGVDSIIRNPREYT
VALLVQQRSPIVGDTVQEAGLRHLQGLYLVEVTRADGTLIPAVAPDTKIE
AGDTLLFAGVVETVTELYHIPGLVPATGQSQKMKIERHHRRLVELVIASS
SMLVGKTAKESKFRSRFQAAIIAVHRQGEHVKEKIADISLRAGDTLLVET
GSEFTLRFGKDSNFALVSEVSGSQPPREDRLHMLIAASIAVTMVSLATAG
VVPLMSAAAGASFILIATGCLSLTNAARAVDMSVIITIAASFGISNGMED
TGAAEQLANFIVDIFRPIGNLGLLFGIYVGTALLSSVITNNAAVSLMFPV
ISNILKSDDTDIDALATLYTLMIGASASFSTPIGYQTNLMVHGPGGYTFM
DWVIFGVPMQLLLGVVGVLSINAFFS*

mRNA from alignment at NODE_651_length_20246_cov_4.368345:1252..3582+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7192.t1 ID=Gcaud7192.t1|Name=Gcaud7192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2331bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:1252..3582+ (Gracilaria caudata M_176_S67 male)
ATGGCGCATCGTCGTGCGGGCTCGACGGCTACTACTGCCACGCCGCCCAA
CGAGCCGGATACTGCGCCGCGTCGCTCGCGCAATGCTTCGCCGTCATCGA
CCAGATTGTCGTCGAGACATCGCTCGCCGCTGTCGCGTCCGCTCTCGTCC
GGTAATATCGACTTTCAGGTCATTGCCATTCCCGAGCAACCTGACTGTGT
CCCAGAGCACCCCATCTCGGAGCAGCAGTTTCTGGAGCGCGCACTGCAGA
CTGATGACCCGCCTAAAGCGCCGCCGCCACCGCCGTTGCCCAATCCGCGC
TCCAGTACTAGCGTGGACAACCCGTACTACTACGGAAACCCAGCAAAGTA
CAACCCCAAGTTCTCCGACCTACGCAATGACCTGGGCTTCTCCAGAGCCA
TTGCGAAATGGCTCGCGCGCTTCCTCAAGCGCAACTGGGGCATTCTTACT
TTCATGCTCCTGATTGCCATCGGCTTGGCCATGTTGGGCATCTTTGCCTT
CAAGCCGCTTTCGTGGGAAGCCTGGGTCGCTTTTGCCATTCTCACCATCA
CTCTGTGCTTACTCATCACCAATGCACTCCCCACCGCCGTGTCCATGTTG
CTTGGCCTCACCTTAATGCTCGTGCTCAACATCGTTACGCCCGCGCGTGG
AATTGAAGGCTTCGCCAACACGGGCGTCATGTCTGTCGCCATTCTGTTCG
TCGTGGCGGAGGGTATTCAGCGAACTTCTGTGCTACTGCCGCTGTTTCGC
ATTGTGTTGGGCAAACCCAGATTTGTGTGGGAGGCTCAGCtgcgcgtcat
gcttccagtcgctcttatttcagcctttcttaacaacacccccgtggtag
ccatgcttattccggttgtacaatcctggtcacgccgcgctaacttccca
atatctaaactgctcatgccactcaacgatgccgccattcttggtggcac
cctgactttgctcggtaccagtaccaatcttgtcgtcaatggtctcgcca
tcaagacaaggatccttggaaccgttgacggcaccgaggatggtgttgga
aagggcttgcccatctttggtattactccagttggtgcgctcatgctcgt
tacaggcatcatctacatggtattcttctcgcgctgcttgttgcgcgata
gaggtcaaactggtgtcgactcaattattcgcaatccCAGAGAATATACT
GTTGCATTGCTCGTGCAACAACGATCGCCCATTGTGGGCGACACCGTGCA
GGAGGCTGGTTTACGTCATCTGCAAGGCCTTTACTTGGTCGAAGTCACCC
GTGCGGATGGTACGCTCATCCCGGCTGTGGCCCCAGACACCAAGATTGAA
GCGGGTGACACCCTACTCTTTGCTGGAGTTGTGGAAACTGTCACAGAGCT
GTATCACATCCCTGGACTTGTCCCCGCTACAGGTCAATCACAAAAGATGA
AGATCGAGCGCCATCATCGCAGATTGGTCGAGCTAGTTATCGCGTCATCC
TCCATGctcgtggggaagactgccaaggagtccaagttccgatcccgttt
tcaagccgccattattgcggtgcatagacagggagaacacgtgaaggaga
agattgctgacatcagtttgagggcgggagatactttgctggtcgaaact
gggtctgaattcacacttagatttggaaaggactccaacttcgcgcttgt
atctgaagtttctgggtcgcagccgcccagagaggatcgactacacatgc
tcatcgcagctagtattgccgtcacaatggtgtcgctggccacagccgga
gtcgtaccgctgatgagcgctgccgctggtgcgtcgttcattctaattgc
tacagggtgcctctcacttaccaacgccgccagagcggttgatatgtcgg
tcattattacgattgccgccagtttcggtatatcgaacggcatggaagat
accggagcggcagaacaattggcaaacttcatcgtggacatcttcagacc
tatcggcaatttgggtctgctgtttggcatatatgtcggaaccgccttgt
tgtcatcagtgatcacaaacaacgctgctgtgtcgcttatgttccctgtg
atcagtaacattttaaagTCAGACGACACTGACATCGATGCTCTGGCAAC
TTTGTACACGCTCATGATTGGCGCTTCTGCAAGTTTCTCCACGCCAATTG
GGTACCAGACAAATCTTATGGTACATGGTCCTGGCGGTTACACATTCATG
GACTGGGTCATTTTTGGAGTGCCTATGCAACTATTGCTGGGTGTTGTTGG
TGTTCTGTCCATAAACGCTTTCTTCTCGTAG

Coding sequence (CDS) from alignment at NODE_651_length_20246_cov_4.368345:1252..3582+

>Gcaud7192.t1 ID=Gcaud7192.t1|Name=Gcaud7192.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2331bp|location=Sequence derived from alignment at NODE_651_length_20246_cov_4.368345:1252..3582+ (Gracilaria caudata M_176_S67 male)
ATGGCGCATCGTCGTGCGGGCTCGACGGCTACTACTGCCACGCCGCCCAA
CGAGCCGGATACTGCGCCGCGTCGCTCGCGCAATGCTTCGCCGTCATCGA
CCAGATTGTCGTCGAGACATCGCTCGCCGCTGTCGCGTCCGCTCTCGTCC
GGTAATATCGACTTTCAGGTCATTGCCATTCCCGAGCAACCTGACTGTGT
CCCAGAGCACCCCATCTCGGAGCAGCAGTTTCTGGAGCGCGCACTGCAGA
CTGATGACCCGCCTAAAGCGCCGCCGCCACCGCCGTTGCCCAATCCGCGC
TCCAGTACTAGCGTGGACAACCCGTACTACTACGGAAACCCAGCAAAGTA
CAACCCCAAGTTCTCCGACCTACGCAATGACCTGGGCTTCTCCAGAGCCA
TTGCGAAATGGCTCGCGCGCTTCCTCAAGCGCAACTGGGGCATTCTTACT
TTCATGCTCCTGATTGCCATCGGCTTGGCCATGTTGGGCATCTTTGCCTT
CAAGCCGCTTTCGTGGGAAGCCTGGGTCGCTTTTGCCATTCTCACCATCA
CTCTGTGCTTACTCATCACCAATGCACTCCCCACCGCCGTGTCCATGTTG
CTTGGCCTCACCTTAATGCTCGTGCTCAACATCGTTACGCCCGCGCGTGG
AATTGAAGGCTTCGCCAACACGGGCGTCATGTCTGTCGCCATTCTGTTCG
TCGTGGCGGAGGGTATTCAGCGAACTTCTGTGCTACTGCCGCTGTTTCGC
ATTGTGTTGGGCAAACCCAGATTTGTGTGGGAGGCTCAGCtgcgcgtcat
gcttccagtcgctcttatttcagcctttcttaacaacacccccgtggtag
ccatgcttattccggttgtacaatcctggtcacgccgcgctaacttccca
atatctaaactgctcatgccactcaacgatgccgccattcttggtggcac
cctgactttgctcggtaccagtaccaatcttgtcgtcaatggtctcgcca
tcaagacaaggatccttggaaccgttgacggcaccgaggatggtgttgga
aagggcttgcccatctttggtattactccagttggtgcgctcatgctcgt
tacaggcatcatctacatggtattcttctcgcgctgcttgttgcgcgata
gaggtcaaactggtgtcgactcaattattcgcaatccCAGAGAATATACT
GTTGCATTGCTCGTGCAACAACGATCGCCCATTGTGGGCGACACCGTGCA
GGAGGCTGGTTTACGTCATCTGCAAGGCCTTTACTTGGTCGAAGTCACCC
GTGCGGATGGTACGCTCATCCCGGCTGTGGCCCCAGACACCAAGATTGAA
GCGGGTGACACCCTACTCTTTGCTGGAGTTGTGGAAACTGTCACAGAGCT
GTATCACATCCCTGGACTTGTCCCCGCTACAGGTCAATCACAAAAGATGA
AGATCGAGCGCCATCATCGCAGATTGGTCGAGCTAGTTATCGCGTCATCC
TCCATGctcgtggggaagactgccaaggagtccaagttccgatcccgttt
tcaagccgccattattgcggtgcatagacagggagaacacgtgaaggaga
agattgctgacatcagtttgagggcgggagatactttgctggtcgaaact
gggtctgaattcacacttagatttggaaaggactccaacttcgcgcttgt
atctgaagtttctgggtcgcagccgcccagagaggatcgactacacatgc
tcatcgcagctagtattgccgtcacaatggtgtcgctggccacagccgga
gtcgtaccgctgatgagcgctgccgctggtgcgtcgttcattctaattgc
tacagggtgcctctcacttaccaacgccgccagagcggttgatatgtcgg
tcattattacgattgccgccagtttcggtatatcgaacggcatggaagat
accggagcggcagaacaattggcaaacttcatcgtggacatcttcagacc
tatcggcaatttgggtctgctgtttggcatatatgtcggaaccgccttgt
tgtcatcagtgatcacaaacaacgctgctgtgtcgcttatgttccctgtg
atcagtaacattttaaagTCAGACGACACTGACATCGATGCTCTGGCAAC
TTTGTACACGCTCATGATTGGCGCTTCTGCAAGTTTCTCCACGCCAATTG
GGTACCAGACAAATCTTATGGTACATGGTCCTGGCGGTTACACATTCATG
GACTGGGTCATTTTTGGAGTGCCTATGCAACTATTGCTGGGTGTTGTTGG
TGTTCTGTCCATAAACGCTTTCTTCTCGTAG