Gcaud7136.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7136.t1
Unique Name	Gcaud7136.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_26_length_75114_cov_4.470882	contig	NODE_26_length_75114_cov_4.470882:40606..42510 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4113.PGSC0003DMT400017657
PFAMs	Dor1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20295
Evalue	2.79e-86
EggNOG OGs	KOG2069@1\|root,KOG2069@2759\|Eukaryota,37SHY@33090\|Viridiplantae,3GFRB@35493\|Streptophyta,44BCX@71274\|asterids
Description	Conserved oligomeric Golgi complex
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7136	Gcaud7136	Gracilaria caudata M_176_S67 male	gene	NODE_26_length_75114_cov_4.470882 40606..42510 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7136.t1.stop1	Gcaud7136.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_26_length_75114_cov_4.470882 40606..40608 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7136.t1.CDS1	Gcaud7136.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_26_length_75114_cov_4.470882 40606..42510 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7136.t1.exon1	Gcaud7136.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_26_length_75114_cov_4.470882 40606..42510 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7136.t1.start1	Gcaud7136.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_26_length_75114_cov_4.470882 42508..42510 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7136.t1	Gcaud7136.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_26_length_75114_cov_4.470882 40606..42510 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_26_length_75114_cov_4.470882:40606..42510-
coding sequence from alignment at NODE_26_length_75114_cov_4.470882:40606..42510-

mRNA sequence

>Gcaud7136.t1 ID=Gcaud7136.t1|Name=Gcaud7136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=635bp
MTAEVLGVQEKPPDSNNAPEPLDPEKDAEEALKAICKFVLNDLPADAPSC
EKWHGLHAYIEELCGYSIERLSREPDDLSSACVRLKNELEDVACGNYRAL
IESFECAGAVRDGVADVRSRLDELISSLPKLADATRQFSASVTEKQRERE
NRLRAITEHRAVADIVEMPRLMTTLVGAELYDEALELRECAVKLYAMHCD
EILIRHVCEEMDVLTQQMVLQLLVLLRNPIQLPMCLRIVGFLRRLDVFSE
YRLRMLFLHCRGEWMRNGIETSTANTRQAELVSLSDNMRSMMFEIITQYR
AVFNDDTEDVSEKLEAHSSAPSGRSYSHSSSILFDWTSSAVTEYLEKLSN
GIKDVKDGAALNTILQQAMYCGQSLGRVGADFRAALPPMFEDSVMQIYCS
HLNAALRQFEMMIEDNRWAPVGSSALRKERGQLGTGTQYSRESEASIDGA
SNNEYDPPLAILDSPPLAVFMNGILAAFNDLRLCAPVSLGPQLGKVLRET
LISSGEFMTAIGGPGGAFLKRSDRPHYVSMALSLRDLCVPHVSKCLEYCL
DSSSLICVKDVQHVLNSLFGDTLPKDGPLESNDVLSSEELCQTHQAEHPR
NDEDKHQALSEENGHVENYEEVDRREEAEENLIL*

spliced messenger RNA

>Gcaud7136.t1 ID=Gcaud7136.t1|Name=Gcaud7136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_26_length_75114_cov_4.470882:40606..42510- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCCGAGGTATTGGGTGTCCAAGAGAAGCCTCCTGATTCCAATAA
TGCACCTGAGCCTCTGGATCCTGAAAAAGATGCTGAAGAGGCTCTCAAAG
CAATCTGCAAGTTTGTTCTGAACGACTTGCCTGCGGATGCACCATCATGT
GAGAAATGGCATGGGCTTCATGCCTATATTGAAGAACTCTGTGGTTATAG
TATCGAGAGGCTATCACGTGAACCAGATGATCTTAGCTCTGCATGTGTCC
GTCTGAAGAACGAGCTTGAAGATGTTGCGTGCGGAAACTATCGAGCACTT
ATTGAAAGCTTTGAATGTGCTGGTGCAGTCCGTGACGGCGTTGCAGATGT
ACGGTCTAGACTCGATGAGCTGATCAGTTCTTTACCAAAGTTGGCCGACG
CCACACGCCAATTTTCCGCGAGCGTCACAGAGAAGCAACGCGAAAGAGAA
AACAGATTGCGAGCGATCACAGAACATCGAGCCGTAGCAGACATAGTGGA
AATGCCAAGACTAATGACCACGCTGGTGGGGGCGGAGTTGTATGATGAAG
CTTTAGAACTGCGTGAATGTGCAGTAAAGCTGTACGCTATGCACTGTGAC
GAAATTCTTATTCGTCACGTATGTGAGGAAATGGACGTTCTCACTCAGCA
AATGGTTCTGCAACTACTCGTACTCTTGCGAAACCCCATACAGCTGCCGA
TGTGCTTGCGCATAGTTGGTTTTCTGCGTCGCCTCGATGTATTTTCGGAG
TACCGATTGCGCATGCTGTTTCTGCACTGTCGAGGCGAATGGATGAGAAA
CGGAATAGAGACCTCAACGGCTAACACAAGACAGGCAGAATTAGTTAGTC
TCAGCGACAACATGAGGTCCATGATGTTCGAAATCATCACACAGTATCGC
GCGGTCTTTAACGATGATACTGAAGATGTATCTGAAAAGCTTGAAGCCCA
TTCATCTGCTCCATCCGGAAGATCGTATTCACATTCGTCGTCAATTCTAT
TCGACTGGACATCGTCCGCAGTCACGGAATATTTAGAAAAGCTGAGCAAT
GGCATAAAGGATGTTAAAGACGGGGCTGCGCTGAACACAATCCTTCAACA
GGCGATGTACTGCGGGCAATCCCTTGGTCGAGTTGGAGCAGATTTTCGAG
CAGCGCTTCCGCCAATGTTCGAAGATTCTGTGATGCAAATATACTGTTCT
CACCTAAATGCCGCCTTAAGACAATTCGAGATGATGATTGAAGATAATCG
TTGGGCTCCTGTTGGATCGTCAGCTTTGCGGAAGGAGAGAGGGCAACTTG
GAACCGGAACCCAGTACAGTAGAGAATCTGAAGCAAGCATTGATGGTGCG
TCAAACAATGAATATGATCCTCCTCTTGCCATCCTTGACAGTCCACCCCT
CGCTGTATTCATGAATGGTATTCTTGCGGCTTTCAATGACCTGCGACTAT
GTGCTCCGGTTTCTCTCGGACCACAGCTAGGAAAGGTCTTGCGTGAAACG
TTAATTAGTTCTGGAGAGTTCATGACAGCTATTGGCGGTCCAGGTGGTGC
ATTCTTGAAAAGGTCCGATAGGCCTCACTATGTGTCTATGGCGCTTTCTC
TACGTGATTTGTGTGTACCCCACGTATCGAAGTGTTTAGAATATTGTTTG
GACTCGTCCAGTCTCATATGTGTGAAAGACGTGCAACATGTGTTGAACTC
TTTGTTTGGAGACACACTGCCCAAGGACGGACCTCTCGAAAGTAATGATG
TACTCTCAAGCGAGGAACTATGTCAAACCCACCAAGCAGAGCATCCGAGG
AATGATGAAGATAAACATCAAGCCCTTTCGGAAGAAAACGGACATGTTGA
GAACTATGAGGAAGTTGACAGGCGTGAGGAGGCAGAAGAGAACTTGATTC
TGTGA

protein sequence of Gcaud7136.t1

>Gcaud7136.t1 ID=Gcaud7136.t1|Name=Gcaud7136.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=635bp
MTAEVLGVQEKPPDSNNAPEPLDPEKDAEEALKAICKFVLNDLPADAPSC
EKWHGLHAYIEELCGYSIERLSREPDDLSSACVRLKNELEDVACGNYRAL
IESFECAGAVRDGVADVRSRLDELISSLPKLADATRQFSASVTEKQRERE
NRLRAITEHRAVADIVEMPRLMTTLVGAELYDEALELRECAVKLYAMHCD
EILIRHVCEEMDVLTQQMVLQLLVLLRNPIQLPMCLRIVGFLRRLDVFSE
YRLRMLFLHCRGEWMRNGIETSTANTRQAELVSLSDNMRSMMFEIITQYR
AVFNDDTEDVSEKLEAHSSAPSGRSYSHSSSILFDWTSSAVTEYLEKLSN
GIKDVKDGAALNTILQQAMYCGQSLGRVGADFRAALPPMFEDSVMQIYCS
HLNAALRQFEMMIEDNRWAPVGSSALRKERGQLGTGTQYSRESEASIDGA
SNNEYDPPLAILDSPPLAVFMNGILAAFNDLRLCAPVSLGPQLGKVLRET
LISSGEFMTAIGGPGGAFLKRSDRPHYVSMALSLRDLCVPHVSKCLEYCL
DSSSLICVKDVQHVLNSLFGDTLPKDGPLESNDVLSSEELCQTHQAEHPR
NDEDKHQALSEENGHVENYEEVDRREEAEENLIL*

mRNA from alignment at NODE_26_length_75114_cov_4.470882:40606..42510-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7136.t1 ID=Gcaud7136.t1|Name=Gcaud7136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_26_length_75114_cov_4.470882:40606..42510- (Gracilaria caudata M_176_S67 male)
ATGACAGCCGAGGTATTGGGTGTCCAAGAGAAGCCTCCTGATTCCAATAA
TGCACCTGAGCCTCTGGATCCTGAAAAAGATGCTGAAGAGGCTCTCAAAG
CAATCTGCAAGTTTGTTCTGAACGACTTGCCTGCGGATGCACCATCATGT
GAGAAATGGCATGGGCTTCATGCCTATATTGAAGAACTCTGTGGTTATAG
TATCGAGAGGCTATCACGTGAACCAGATGATCTTAGCTCTGCATGTGTCC
GTCTGAAGAACGAGCTTGAAGATGTTGCGTGCGGAAACTATCGAGCACTT
ATTGAAAGCTTTGAATGTGCTGGTGCAGTCCGTGACGGCGTTGCAGATGT
ACGGTCTAGACTCGATGAGCTGATCAGTTCTTTACCAAAGTTGGCCGACG
CCACACGCCAATTTTCCGCGAGCGTCACAGAGAAGCAACGCGAAAGAGAA
AACAGATTGCGAGCGATCACAGAACATCGAGCCGTAGCAGACATAGTGGA
AATGCCAAGACTAATGACCACGCTGGTGGGGGCGGAGTTGTATGATGAAG
CTTTAGAACTGCGTGAATGTGCAGTAAAGCTGTACGCTATGCACTGTGAC
GAAATTCTTATTCGTCACGTATGTGAGGAAATGGACGTTCTCACTCAGCA
AATGGTTCTGCAACTACTCGTACTCTTGCGAAACCCCATACAGCTGCCGA
TGTGCTTGCGCATAGTTGGTTTTCTGCGTCGCCTCGATGTATTTTCGGAG
TACCGATTGCGCATGCTGTTTCTGCACTGTCGAGGCGAATGGATGAGAAA
CGGAATAGAGACCTCAACGGCTAACACAAGACAGGCAGAATTAGTTAGTC
TCAGCGACAACATGAGGTCCATGATGTTCGAAATCATCACACAGTATCGC
GCGGTCTTTAACGATGATACTGAAGATGTATCTGAAAAGCTTGAAGCCCA
TTCATCTGCTCCATCCGGAAGATCGTATTCACATTCGTCGTCAATTCTAT
TCGACTGGACATCGTCCGCAGTCACGGAATATTTAGAAAAGCTGAGCAAT
GGCATAAAGGATGTTAAAGACGGGGCTGCGCTGAACACAATCCTTCAACA
GGCGATGTACTGCGGGCAATCCCTTGGTCGAGTTGGAGCAGATTTTCGAG
CAGCGCTTCCGCCAATGTTCGAAGATTCTGTGATGCAAATATACTGTTCT
CACCTAAATGCCGCCTTAAGACAATTCGAGATGATGATTGAAGATAATCG
TTGGGCTCCTGTTGGATCGTCAGCTTTGCGGAAGGAGAGAGGGCAACTTG
GAACCGGAACCCAGTACAGTAGAGAATCTGAAGCAAGCATTGATGGTGCG
TCAAACAATGAATATGATCCTCCTCTTGCCATCCTTGACAGTCCACCCCT
CGCTGTATTCATGAATGGTATTCTTGCGGCTTTCAATGACCTGCGACTAT
GTGCTCCGGTTTCTCTCGGACCACAGCTAGGAAAGGTCTTGCGTGAAACG
TTAATTAGTTCTGGAGAGTTCATGACAGCTATTGGCGGTCCAGGTGGTGC
ATTCTTGAAAAGGTCCGATAGGCCTCACTATGTGTCTATGGCGCTTTCTC
TACGTGATTTGTGTGTACCCCACGTATCGAAGTGTTTAGAATATTGTTTG
GACTCGTCCAGTCTCATATGTGTGAAAGACGTGCAACATGTGTTGAACTC
TTTGTTTGGAGACACACTGCCCAAGGACGGACCTCTCGAAAGTAATGATG
TACTCTCAAGCGAGGAACTATGTCAAACCCACCAAGCAGAGCATCCGAGG
AATGATGAAGATAAACATCAAGCCCTTTCGGAAGAAAACGGACATGTTGA
GAACTATGAGGAAGTTGACAGGCGTGAGGAGGCAGAAGAGAACTTGATTC
TGTGA

Coding sequence (CDS) from alignment at NODE_26_length_75114_cov_4.470882:40606..42510-

>Gcaud7136.t1 ID=Gcaud7136.t1|Name=Gcaud7136.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1905bp|location=Sequence derived from alignment at NODE_26_length_75114_cov_4.470882:40606..42510- (Gracilaria caudata M_176_S67 male)
ATGACAGCCGAGGTATTGGGTGTCCAAGAGAAGCCTCCTGATTCCAATAA
TGCACCTGAGCCTCTGGATCCTGAAAAAGATGCTGAAGAGGCTCTCAAAG
CAATCTGCAAGTTTGTTCTGAACGACTTGCCTGCGGATGCACCATCATGT
GAGAAATGGCATGGGCTTCATGCCTATATTGAAGAACTCTGTGGTTATAG
TATCGAGAGGCTATCACGTGAACCAGATGATCTTAGCTCTGCATGTGTCC
GTCTGAAGAACGAGCTTGAAGATGTTGCGTGCGGAAACTATCGAGCACTT
ATTGAAAGCTTTGAATGTGCTGGTGCAGTCCGTGACGGCGTTGCAGATGT
ACGGTCTAGACTCGATGAGCTGATCAGTTCTTTACCAAAGTTGGCCGACG
CCACACGCCAATTTTCCGCGAGCGTCACAGAGAAGCAACGCGAAAGAGAA
AACAGATTGCGAGCGATCACAGAACATCGAGCCGTAGCAGACATAGTGGA
AATGCCAAGACTAATGACCACGCTGGTGGGGGCGGAGTTGTATGATGAAG
CTTTAGAACTGCGTGAATGTGCAGTAAAGCTGTACGCTATGCACTGTGAC
GAAATTCTTATTCGTCACGTATGTGAGGAAATGGACGTTCTCACTCAGCA
AATGGTTCTGCAACTACTCGTACTCTTGCGAAACCCCATACAGCTGCCGA
TGTGCTTGCGCATAGTTGGTTTTCTGCGTCGCCTCGATGTATTTTCGGAG
TACCGATTGCGCATGCTGTTTCTGCACTGTCGAGGCGAATGGATGAGAAA
CGGAATAGAGACCTCAACGGCTAACACAAGACAGGCAGAATTAGTTAGTC
TCAGCGACAACATGAGGTCCATGATGTTCGAAATCATCACACAGTATCGC
GCGGTCTTTAACGATGATACTGAAGATGTATCTGAAAAGCTTGAAGCCCA
TTCATCTGCTCCATCCGGAAGATCGTATTCACATTCGTCGTCAATTCTAT
TCGACTGGACATCGTCCGCAGTCACGGAATATTTAGAAAAGCTGAGCAAT
GGCATAAAGGATGTTAAAGACGGGGCTGCGCTGAACACAATCCTTCAACA
GGCGATGTACTGCGGGCAATCCCTTGGTCGAGTTGGAGCAGATTTTCGAG
CAGCGCTTCCGCCAATGTTCGAAGATTCTGTGATGCAAATATACTGTTCT
CACCTAAATGCCGCCTTAAGACAATTCGAGATGATGATTGAAGATAATCG
TTGGGCTCCTGTTGGATCGTCAGCTTTGCGGAAGGAGAGAGGGCAACTTG
GAACCGGAACCCAGTACAGTAGAGAATCTGAAGCAAGCATTGATGGTGCG
TCAAACAATGAATATGATCCTCCTCTTGCCATCCTTGACAGTCCACCCCT
CGCTGTATTCATGAATGGTATTCTTGCGGCTTTCAATGACCTGCGACTAT
GTGCTCCGGTTTCTCTCGGACCACAGCTAGGAAAGGTCTTGCGTGAAACG
TTAATTAGTTCTGGAGAGTTCATGACAGCTATTGGCGGTCCAGGTGGTGC
ATTCTTGAAAAGGTCCGATAGGCCTCACTATGTGTCTATGGCGCTTTCTC
TACGTGATTTGTGTGTACCCCACGTATCGAAGTGTTTAGAATATTGTTTG
GACTCGTCCAGTCTCATATGTGTGAAAGACGTGCAACATGTGTTGAACTC
TTTGTTTGGAGACACACTGCCCAAGGACGGACCTCTCGAAAGTAATGATG
TACTCTCAAGCGAGGAACTATGTCAAACCCACCAAGCAGAGCATCCGAGG
AATGATGAAGATAAACATCAAGCCCTTTCGGAAGAAAACGGACATGTTGA
GAACTATGAGGAAGTTGACAGGCGTGAGGAGGCAGAAGAGAACTTGATTC
TGTGA