Gcaud7127.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7127.t1
Unique Name	Gcaud7127.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	282

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_26_length_75114_cov_4.470882	contig	NODE_26_length_75114_cov_4.470882:24170..25015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_04988T0
PFAMs	NMT1,Phosphonate-bd
Max annot lvl	33154\|Opisthokonta
Evalue	1.32e-60
EggNOG OGs	2CMQY@1\|root,2QRHZ@2759\|Eukaryota,38UP7@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7127	Gcaud7127	Gracilaria caudata M_176_S67 male	gene	NODE_26_length_75114_cov_4.470882 24170..25015 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7127.t1.start1	Gcaud7127.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_26_length_75114_cov_4.470882 24170..24172 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7127.t1.CDS1	Gcaud7127.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_26_length_75114_cov_4.470882 24170..25015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7127.t1.exon1	Gcaud7127.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_26_length_75114_cov_4.470882 24170..25015 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7127.t1.stop1	Gcaud7127.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_26_length_75114_cov_4.470882 25013..25015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7127.t1	Gcaud7127.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_26_length_75114_cov_4.470882 24170..25015 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_26_length_75114_cov_4.470882:24170..25015+
coding sequence from alignment at NODE_26_length_75114_cov_4.470882:24170..25015+

mRNA sequence

>Gcaud7127.t1 ID=Gcaud7127.t1|Name=Gcaud7127.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=282bp
MNALRVGGVPEAFNDPFSFADFGSHGFTVSPSFVSCPGGSGSMLKGVMSR
ELDAAFALTDCIVAAIENGEPVRIAGPLVKSPLTWAVIVNPKEVIGVQDL
SEATWGISRMNSGSHVMVYTLAKEQNWPQEPKFKVCGNFKGLRDSLEEGS
IHAFLWEHYTTKPYADQGLVKIIGGIPTPWSCFSVVVREGCERLDEVHRM
TDAFVEAGKKFVDDEGSAEGITQRHGMSKDDALAWMAGVNYAEGGERKVD
SNMLEKTRQTLLQAGVLKGFECTGGIASYHE*

spliced messenger RNA

>Gcaud7127.t1 ID=Gcaud7127.t1|Name=Gcaud7127.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=846bp|location=Sequence derived from alignment at NODE_26_length_75114_cov_4.470882:24170..25015+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCTCTAAGAGTGGGGGGTGTTCCTGAAGCTTTTAACGACCCCTT
CTCGTTTGCCGATTTTGGCTCTCATGGGTTCACAGTCAGTCCTAGTTTCG
TATCTTGCCCTGGTGGTAGTGGGTCCATGCTCAAAGGTGTGATGAGCAGG
GAACTGGACGCAGCATTTGCTCTTACGGATTGCATTGTGGCAGCAATAGA
GAACGGGGAACCAGTGCGAATAGCTGGACCACTTGTGAAAAGTCCGCTTA
CATGGGCAGTGATCGTTAACCCCAAAGAAGTTATTGGCGTACAAGATTTG
TCAGAGGCAACATGGGGAATATCACGGATGAATAGCGGAAGTCATGTGAT
GGTCTACACACTCGCAAAGGAGCAGAACTGGCCACAAGAGCCAAAGTTCA
AGGTTTGCGGTAATTTTAAAGGTCTACGGGACTCGTTGGAAGAAGGATCT
ATTCATGCCTTTTTGTGGGAGCATTATACAACTAAGCCATACGCAGACCA
GGGACTCGTGAAGATAATCGGTGGTATCCCAACGCCTTGGAGTTGCTTTA
GTGTAGTGGTTCGTGAAGGCTGTGAGAGACTTGATGAGGTTCACCGTATG
ACAGATGCCTTTGTTGAAGCCGGAAAGAAATTTGTTGATGATGAAGGCAG
TGCTGAAGGGATAACGCAGCGCCATGGAATGTCAAAAGACGACGCACTGG
CTTGGATGGCGGGGGTGAACTATGCAGAGGGCGGGGAGCGCAAAGTTGAC
AGCAACATGCTTGAAAAAACGAGGCAAACGTTACTTCAAGCTGGGGTACT
AAAAGGATTTGAATGCACCGGGGGCATAGCATCATATCACGAATGA

protein sequence of Gcaud7127.t1

>Gcaud7127.t1 ID=Gcaud7127.t1|Name=Gcaud7127.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=282bp
MNALRVGGVPEAFNDPFSFADFGSHGFTVSPSFVSCPGGSGSMLKGVMSR
ELDAAFALTDCIVAAIENGEPVRIAGPLVKSPLTWAVIVNPKEVIGVQDL
SEATWGISRMNSGSHVMVYTLAKEQNWPQEPKFKVCGNFKGLRDSLEEGS
IHAFLWEHYTTKPYADQGLVKIIGGIPTPWSCFSVVVREGCERLDEVHRM
TDAFVEAGKKFVDDEGSAEGITQRHGMSKDDALAWMAGVNYAEGGERKVD
SNMLEKTRQTLLQAGVLKGFECTGGIASYHE*

mRNA from alignment at NODE_26_length_75114_cov_4.470882:24170..25015+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7127.t1 ID=Gcaud7127.t1|Name=Gcaud7127.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=846bp|location=Sequence derived from alignment at NODE_26_length_75114_cov_4.470882:24170..25015+ (Gracilaria caudata M_176_S67 male)
ATGAACGCTCTAAGAGTGGGGGGTGTTCCTGAAGCTTTTAACGACCCCTT
CTCGTTTGCCGATTTTGGCTCTCATGGGTTCACAGTCAGTCCTAGTTTCG
TATCTTGCCCTGGTGGTAGTGGGTCCATGCTCAAAGGTGTGATGAGCAGG
GAACTGGACGCAGCATTTGCTCTTACGGATTGCATTGTGGCAGCAATAGA
GAACGGGGAACCAGTGCGAATAGCTGGACCACTTGTGAAAAGTCCGCTTA
CATGGGCAGTGATCGTTAACCCCAAAGAAGTTATTGGCGTACAAGATTTG
TCAGAGGCAACATGGGGAATATCACGGATGAATAGCGGAAGTCATGTGAT
GGTCTACACACTCGCAAAGGAGCAGAACTGGCCACAAGAGCCAAAGTTCA
AGGTTTGCGGTAATTTTAAAGGTCTACGGGACTCGTTGGAAGAAGGATCT
ATTCATGCCTTTTTGTGGGAGCATTATACAACTAAGCCATACGCAGACCA
GGGACTCGTGAAGATAATCGGTGGTATCCCAACGCCTTGGAGTTGCTTTA
GTGTAGTGGTTCGTGAAGGCTGTGAGAGACTTGATGAGGTTCACCGTATG
ACAGATGCCTTTGTTGAAGCCGGAAAGAAATTTGTTGATGATGAAGGCAG
TGCTGAAGGGATAACGCAGCGCCATGGAATGTCAAAAGACGACGCACTGG
CTTGGATGGCGGGGGTGAACTATGCAGAGGGCGGGGAGCGCAAAGTTGAC
AGCAACATGCTTGAAAAAACGAGGCAAACGTTACTTCAAGCTGGGGTACT
AAAAGGATTTGAATGCACCGGGGGCATAGCATCATATCACGAATGA

Coding sequence (CDS) from alignment at NODE_26_length_75114_cov_4.470882:24170..25015+

>Gcaud7127.t1 ID=Gcaud7127.t1|Name=Gcaud7127.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=846bp|location=Sequence derived from alignment at NODE_26_length_75114_cov_4.470882:24170..25015+ (Gracilaria caudata M_176_S67 male)
ATGAACGCTCTAAGAGTGGGGGGTGTTCCTGAAGCTTTTAACGACCCCTT
CTCGTTTGCCGATTTTGGCTCTCATGGGTTCACAGTCAGTCCTAGTTTCG
TATCTTGCCCTGGTGGTAGTGGGTCCATGCTCAAAGGTGTGATGAGCAGG
GAACTGGACGCAGCATTTGCTCTTACGGATTGCATTGTGGCAGCAATAGA
GAACGGGGAACCAGTGCGAATAGCTGGACCACTTGTGAAAAGTCCGCTTA
CATGGGCAGTGATCGTTAACCCCAAAGAAGTTATTGGCGTACAAGATTTG
TCAGAGGCAACATGGGGAATATCACGGATGAATAGCGGAAGTCATGTGAT
GGTCTACACACTCGCAAAGGAGCAGAACTGGCCACAAGAGCCAAAGTTCA
AGGTTTGCGGTAATTTTAAAGGTCTACGGGACTCGTTGGAAGAAGGATCT
ATTCATGCCTTTTTGTGGGAGCATTATACAACTAAGCCATACGCAGACCA
GGGACTCGTGAAGATAATCGGTGGTATCCCAACGCCTTGGAGTTGCTTTA
GTGTAGTGGTTCGTGAAGGCTGTGAGAGACTTGATGAGGTTCACCGTATG
ACAGATGCCTTTGTTGAAGCCGGAAAGAAATTTGTTGATGATGAAGGCAG
TGCTGAAGGGATAACGCAGCGCCATGGAATGTCAAAAGACGACGCACTGG
CTTGGATGGCGGGGGTGAACTATGCAGAGGGCGGGGAGCGCAAAGTTGAC
AGCAACATGCTTGAAAAAACGAGGCAAACGTTACTTCAAGCTGGGGTACT
AAAAGGATTTGAATGCACCGGGGGCATAGCATCATATCACGAATGA