Gcaud4077.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud4077.t1
Unique Name	Gcaud4077.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_125_length_46410_cov_4.521276	contig	NODE_125_length_46410_cov_4.521276:37786..38619 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud4077	Gcaud4077	Gracilaria caudata M_176_S67 male	gene	NODE_125_length_46410_cov_4.521276 37786..38619 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4077.t1.stop1	Gcaud4077.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_125_length_46410_cov_4.521276 37786..37788 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4077.t1.CDS1	Gcaud4077.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_125_length_46410_cov_4.521276 37786..38619 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4077.t1.exon1	Gcaud4077.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_125_length_46410_cov_4.521276 37786..38619 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4077.t1.start1	Gcaud4077.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_125_length_46410_cov_4.521276 38617..38619 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4077.t1	Gcaud4077.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_125_length_46410_cov_4.521276 37786..38619 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_125_length_46410_cov_4.521276:37786..38619-
coding sequence from alignment at NODE_125_length_46410_cov_4.521276:37786..38619-

mRNA sequence

>Gcaud4077.t1 ID=Gcaud4077.t1|Name=Gcaud4077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=278bp
LLGGPGHRHCKNSTVVGTPGTTTSQLSPLGDALGDALGDGEVLADTDGVA
DTDALAEADMLALGDALIDADGVVDAEALADADMLALADALIDAEGVVDI
EALADADMLALEDALTDAEGVVDTEALADADELALGDVLIEADGVADADK
DADGDIDDDGVTDDDGVIDNDGVIDDDGVMDDDGVIDIEALTDDVMLTVG
EVDALGEEDTLADIDIEADTDDEGVIVAETEAETEEEGVILAVIEADELA
VADADTEVDGVMITDGDGECVVVPLGV*

spliced messenger RNA

>Gcaud4077.t1 ID=Gcaud4077.t1|Name=Gcaud4077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=834bp|location=Sequence derived from alignment at NODE_125_length_46410_cov_4.521276:37786..38619- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTTGGAGGTCCTGGACACAGACATTGCAAGAACAGCACCGTAGTGGG
CACGCCCGGAACCACTACCTCACAGCTTTCGCCGCTTGGTGACGCGCTTG
GCGACGCGCTTGGCGATGGAGAGGTGCTTGCTGACACCGATGGCGTGGCA
GACACGGATGCGCTCGCCGAGGCTGACATGCTCGCGCTGGGGGATGCACT
CATTGACGCTGACGGAGTTGTAGACGCCGAGGCACTCGCCGACGCTGACA
TGCTCGCACTGGCAGATGCACTCATTGACGCTGAGGGAGTCGTAGATATC
GAAGCACTTGCCGACGCTGACATGCTTGCGCTGGAAGATGCACTCACTGA
CGCTGAGGGAGTTGTAGACACCGAAGCACTTGCCGACGCTGACGAGCTTG
CGCTTGGAGATGTGCTTATCGAAGCCGATGGAGTCGCAGACGCCGACAAA
GATGCCGATGGCGACATAGACGATGATGGCGTCACAGACGATGATGGCGT
CATAGACAATGATGGCGTCATAGACGATGATGGCGTCATGGACGATGATG
GCGTCATAGACATAGAAGCACTCACGGATGATGTCATGCTCACGGTGGGA
GAAGTTGACGCGCTTGGTGAAGAGGACACACTTGCAGACATTGACATCGA
AGCAGATACAGACGATGAGGGCGTGATAGTAGCCGAAACAGAAGCAGAAA
CAGAAGAAGAAGGTGTAATACTAGCTGTCATTGAAGCAGATGAGCTAGCA
GTTGCAGACGCAGACACAGAAGTCGACGGCGTGATGATCACTGATGGCGA
TGGAGAGTGCGTTGTGGTTCCACTTGGTGTATGA

protein sequence of Gcaud4077.t1

>Gcaud4077.t1 ID=Gcaud4077.t1|Name=Gcaud4077.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=278bp
LLGGPGHRHCKNSTVVGTPGTTTSQLSPLGDALGDALGDGEVLADTDGVA
DTDALAEADMLALGDALIDADGVVDAEALADADMLALADALIDAEGVVDI
EALADADMLALEDALTDAEGVVDTEALADADELALGDVLIEADGVADADK
DADGDIDDDGVTDDDGVIDNDGVIDDDGVMDDDGVIDIEALTDDVMLTVG
EVDALGEEDTLADIDIEADTDDEGVIVAETEAETEEEGVILAVIEADELA
VADADTEVDGVMITDGDGECVVVPLGV*

mRNA from alignment at NODE_125_length_46410_cov_4.521276:37786..38619-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud4077.t1 ID=Gcaud4077.t1|Name=Gcaud4077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=834bp|location=Sequence derived from alignment at NODE_125_length_46410_cov_4.521276:37786..38619- (Gracilaria caudata M_176_S67 male)
TTGCTTGGAGGTCCTGGACACAGACATTGCAAGAACAGCACCGTAGTGGG
CACGCCCGGAACCACTACCTCACAGCTTTCGCCGCTTGGTGACGCGCTTG
GCGACGCGCTTGGCGATGGAGAGGTGCTTGCTGACACCGATGGCGTGGCA
GACACGGATGCGCTCGCCGAGGCTGACATGCTCGCGCTGGGGGATGCACT
CATTGACGCTGACGGAGTTGTAGACGCCGAGGCACTCGCCGACGCTGACA
TGCTCGCACTGGCAGATGCACTCATTGACGCTGAGGGAGTCGTAGATATC
GAAGCACTTGCCGACGCTGACATGCTTGCGCTGGAAGATGCACTCACTGA
CGCTGAGGGAGTTGTAGACACCGAAGCACTTGCCGACGCTGACGAGCTTG
CGCTTGGAGATGTGCTTATCGAAGCCGATGGAGTCGCAGACGCCGACAAA
GATGCCGATGGCGACATAGACGATGATGGCGTCACAGACGATGATGGCGT
CATAGACAATGATGGCGTCATAGACGATGATGGCGTCATGGACGATGATG
GCGTCATAGACATAGAAGCACTCACGGATGATGTCATGCTCACGGTGGGA
GAAGTTGACGCGCTTGGTGAAGAGGACACACTTGCAGACATTGACATCGA
AGCAGATACAGACGATGAGGGCGTGATAGTAGCCGAAACAGAAGCAGAAA
CAGAAGAAGAAGGTGTAATACTAGCTGTCATTGAAGCAGATGAGCTAGCA
GTTGCAGACGCAGACACAGAAGTCGACGGCGTGATGATCACTGATGGCGA
TGGAGAGTGCGTTGTGGTTCCACTTGGTGTATGA

Coding sequence (CDS) from alignment at NODE_125_length_46410_cov_4.521276:37786..38619-

>Gcaud4077.t1 ID=Gcaud4077.t1|Name=Gcaud4077.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=834bp|location=Sequence derived from alignment at NODE_125_length_46410_cov_4.521276:37786..38619- (Gracilaria caudata M_176_S67 male)
TTGCTTGGAGGTCCTGGACACAGACATTGCAAGAACAGCACCGTAGTGGG
CACGCCCGGAACCACTACCTCACAGCTTTCGCCGCTTGGTGACGCGCTTG
GCGACGCGCTTGGCGATGGAGAGGTGCTTGCTGACACCGATGGCGTGGCA
GACACGGATGCGCTCGCCGAGGCTGACATGCTCGCGCTGGGGGATGCACT
CATTGACGCTGACGGAGTTGTAGACGCCGAGGCACTCGCCGACGCTGACA
TGCTCGCACTGGCAGATGCACTCATTGACGCTGAGGGAGTCGTAGATATC
GAAGCACTTGCCGACGCTGACATGCTTGCGCTGGAAGATGCACTCACTGA
CGCTGAGGGAGTTGTAGACACCGAAGCACTTGCCGACGCTGACGAGCTTG
CGCTTGGAGATGTGCTTATCGAAGCCGATGGAGTCGCAGACGCCGACAAA
GATGCCGATGGCGACATAGACGATGATGGCGTCACAGACGATGATGGCGT
CATAGACAATGATGGCGTCATAGACGATGATGGCGTCATGGACGATGATG
GCGTCATAGACATAGAAGCACTCACGGATGATGTCATGCTCACGGTGGGA
GAAGTTGACGCGCTTGGTGAAGAGGACACACTTGCAGACATTGACATCGA
AGCAGATACAGACGATGAGGGCGTGATAGTAGCCGAAACAGAAGCAGAAA
CAGAAGAAGAAGGTGTAATACTAGCTGTCATTGAAGCAGATGAGCTAGCA
GTTGCAGACGCAGACACAGAAGTCGACGGCGTGATGATCACTGATGGCGA
TGGAGAGTGCGTTGTGGTTCCACTTGGTGTATGA