Gcaud4056.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud4056.t1
Unique Name	Gcaud4056.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1231_length_12322_cov_4.194506	contig	NODE_1231_length_12322_cov_4.194506:2332..3927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1108849.XP_002565545.1
Preferred name	lub1
PFAMs	PFU,PUL,WD40
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14018
KEGG Pathway	ko04141,map04141
GOs	GO:0000726,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006914,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010992,GO:0016043,GO:0016236,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019538,GO:0019725,GO:0019941,GO:0030163,GO:0032182,GO:0032446,GO:0033554,GO:0034517,GO:0034641,GO:0035973,GO:0036211,GO:0042592,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051603,GO:0051716,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0070647,GO:0071704,GO:0071840,GO:0072671,GO:0090304,GO:1901360,GO:1901564,GO:1901565,GO:1901575
Evalue	1.66e-08
EggNOG OGs	KOG0301@1\|root,KOG0301@2759\|Eukaryota,38BSR@33154\|Opisthokonta,3NUQN@4751\|Fungi,3QJG5@4890\|Ascomycota,20BU8@147545\|Eurotiomycetes,3S7HT@5042\|Eurotiales
Description	Polyubiquitin binding protein (Doa1 Ufd3)
COG category	I
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud4056	Gcaud4056	Gracilaria caudata M_176_S67 male	gene	NODE_1231_length_12322_cov_4.194506 2332..3927 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4056.t1.start1	Gcaud4056.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1231_length_12322_cov_4.194506 2332..2334 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4056.t1.CDS1	Gcaud4056.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1231_length_12322_cov_4.194506 2332..3927 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4056.t1.exon1	Gcaud4056.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1231_length_12322_cov_4.194506 2332..3927 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4056.t1.stop1	Gcaud4056.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1231_length_12322_cov_4.194506 3925..3927 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4056.t1	Gcaud4056.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1231_length_12322_cov_4.194506 2332..3927 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1231_length_12322_cov_4.194506:2332..3927+
coding sequence from alignment at NODE_1231_length_12322_cov_4.194506:2332..3927+

mRNA sequence

>Gcaud4056.t1 ID=Gcaud4056.t1|Name=Gcaud4056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=532bp
MPDFAKSPVQTLSLAPKSNLLAAQTTPNSFSLAHIAAPTTSSPYAFQPRD
DFSASSLTSLCLASADVLYHADARGAFHRHAVADVLPSLQYSVDAAHTGN
ELTSITAVSPDSVVVTAGKDGAVRCWDPETRQCTAKLTGHRYEVRSVAAS
ASSDVDGSPVTIIASGGRDKTIRLWDVRAHSSNQLHAFTGHSGWVHSVAL
TANPTPLLVSCAGDKTVRVWDLVAMKERSVFKGHEYRVWSVAISPDGRFA
VSGSTDATVRLWKLGEDEGESHVLEGHRDSVLSVAALTSACVLSGCEDGS
LFSWDCRGLLNIPTDADLLYTNSELLSKETKPDVKHERHRAEDKSVGETA
TKGSDLLIATDSKKLDSSPSIPRHFENEVLTPTKLAEKPQSSHTSLTSQE
TDSLKTAVAIPPQKDPRFDKSAAELVNALKRIQTLERSLQRTEHTLGMKE
TQITQLKKSVAEKDLLISRLQGELSSSKRLLQAANVRNLLEQNPRKADVT
LDYQEPVNKIGAVTDQLTALKARLDAMIATN*

spliced messenger RNA

>Gcaud4056.t1 ID=Gcaud4056.t1|Name=Gcaud4056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_1231_length_12322_cov_4.194506:2332..3927+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGACTTTGCTAAGAGTCCCGTGCAGACGCTCAGCTTGGCGCCCAA
GAGCAATCTGCTCGCCGCCCAAACCACGCCAAATTCGTTCTCGCTGGCGC
ATATTGCCGCTCCCACCACCTCCAGCCCGTACGCCTTCCAGCCTCGCGAT
GATTTTTCAGCCTCATCGCTGACCTCCTTATGTCTGGCCTCCGCAGATGT
TTTGTATCACGCAGATGCCAGAGGCGCGTTCCATCGGCATGCTGTGGCGG
ATGTGCTGCCTTCTCTTCAATACAGCGTTGACGCGGCACACACTGGCAAC
GAGCTCACCTCTATAACGGCTGTATCCCCTGATTCCGTGGTCGTCACAGC
GGGAAAAGATGGTGCCGTACGATGCTGGGACCCTGAGACACGGCAGTGCA
CTGCCAAGTTAACAGGCCATCGATACGAAGTGCGCTCGGTCGCAGCTTCA
GCGTCCTCCGATGTGGACGGCAGTCCAGTCACCATAATCGCATCAGGGGG
ACGAGACAAGACAATACGATTATGGGATGTTCGCGCGCATTCTTCAAACC
AGCTTCACGCCTTCACGGGGCACTCGGGCTGGGTCCACAGTGTTGCTTTG
ACTGCCAATCCTACTCCCTTGCTTGTCTCGTGCGCTGGCGATAAGACCGT
CCGCGTGTGGGATCTTGTGGCCATGAAAGAGCGCTCAGTATTCAAGGGCC
ATGAATACCGTGTTTGGAGCGTTGCAATATCTCCCGATGGCCGCTTTGCA
GTCAGTGGGAGCACAGATGCAACTGTCAGACTGTGGAAGCTTGGCGAAGA
CGAAGGGGAGAGCCATGTATTAGAGGGACATAGGGATAGCGTATTGTCAG
TGGCAGCACTAACATCCGCCTGCGTACTTTCAGGTTGCGAAGATGGAAGC
CTCTTCAGCTGGGATTGTCGAGGTCTTCTGAATATTCCAACTGATGCAGA
TTTGTTGTATACAAACAGCGAGCTGTTGAGCAAAGAAACCAAACCAGACG
TCAAACACGAAAGACATCGTGCTGAGGACAAGAGCGTTGGGGAAACTGCC
ACGAAGGGTAGTGATTTATTGATCGCGACGGATTCAAAGAAACTAGATTC
TTCTCCAAGTATACCTAGGCATTTTGAGAACGAGGTCTTGACCCCTACAA
AACTTGCCGAGAAGCCGCAATCATCTCATACATCTCTAACCAGCCAAGAG
ACGGACTCTCTGAAGACGGCTGTTGCGATACCACCACAGAAGGATCCTAG
GTTTGATAAGTCTGCCGCTGAATTAGTCAATGCTCTAAAGCGGATACAGA
CCTTAGAGAGATCTCTCCAACGAACAGAACACACACTTGGGATGAAGGAG
ACTCAGATCACGCAGTTAAAGAAGTCTGTCGCAGAGAAGGATTTGCTCAT
TTCGCGTTTGCAAGGAGAACTGAGTTCGTCCAAGAGACTGCTTCAAGCTG
CGAATGTGCGAAACCTCCTCGAGCAAAACCCTAGGAAGGCAGACGTCACG
CTCGATTATCAGGAACCGGTGAATAAGATTGGGGCGGTGACTGACCAACT
TACCGCTCTCAAAGCAAGATTGGATGCCATGATTGCTACTAACTGA

protein sequence of Gcaud4056.t1

>Gcaud4056.t1 ID=Gcaud4056.t1|Name=Gcaud4056.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=532bp
MPDFAKSPVQTLSLAPKSNLLAAQTTPNSFSLAHIAAPTTSSPYAFQPRD
DFSASSLTSLCLASADVLYHADARGAFHRHAVADVLPSLQYSVDAAHTGN
ELTSITAVSPDSVVVTAGKDGAVRCWDPETRQCTAKLTGHRYEVRSVAAS
ASSDVDGSPVTIIASGGRDKTIRLWDVRAHSSNQLHAFTGHSGWVHSVAL
TANPTPLLVSCAGDKTVRVWDLVAMKERSVFKGHEYRVWSVAISPDGRFA
VSGSTDATVRLWKLGEDEGESHVLEGHRDSVLSVAALTSACVLSGCEDGS
LFSWDCRGLLNIPTDADLLYTNSELLSKETKPDVKHERHRAEDKSVGETA
TKGSDLLIATDSKKLDSSPSIPRHFENEVLTPTKLAEKPQSSHTSLTSQE
TDSLKTAVAIPPQKDPRFDKSAAELVNALKRIQTLERSLQRTEHTLGMKE
TQITQLKKSVAEKDLLISRLQGELSSSKRLLQAANVRNLLEQNPRKADVT
LDYQEPVNKIGAVTDQLTALKARLDAMIATN*

mRNA from alignment at NODE_1231_length_12322_cov_4.194506:2332..3927+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud4056.t1 ID=Gcaud4056.t1|Name=Gcaud4056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_1231_length_12322_cov_4.194506:2332..3927+ (Gracilaria caudata M_176_S67 male)
ATGCCCGACTTTGCTAAGAGTCCCGTGCAGACGCTCAGCTTGGCGCCCAA
GAGCAATCTGCTCGCCGCCCAAACCACGCCAAATTCGTTCTCGCTGGCGC
ATATTGCCGCTCCCACCACCTCCAGCCCGTACGCCTTCCAGCCTCGCGAT
GATTTTTCAGCCTCATCGCTGACCTCCTTATGTCTGGCCTCCGCAGATGT
TTTGTATCACGCAGATGCCAGAGGCGCGTTCCATCGGCATGCTGTGGCGG
ATGTGCTGCCTTCTCTTCAATACAGCGTTGACGCGGCACACACTGGCAAC
GAGCTCACCTCTATAACGGCTGTATCCCCTGATTCCGTGGTCGTCACAGC
GGGAAAAGATGGTGCCGTACGATGCTGGGACCCTGAGACACGGCAGTGCA
CTGCCAAGTTAACAGGCCATCGATACGAAGTGCGCTCGGTCGCAGCTTCA
GCGTCCTCCGATGTGGACGGCAGTCCAGTCACCATAATCGCATCAGGGGG
ACGAGACAAGACAATACGATTATGGGATGTTCGCGCGCATTCTTCAAACC
AGCTTCACGCCTTCACGGGGCACTCGGGCTGGGTCCACAGTGTTGCTTTG
ACTGCCAATCCTACTCCCTTGCTTGTCTCGTGCGCTGGCGATAAGACCGT
CCGCGTGTGGGATCTTGTGGCCATGAAAGAGCGCTCAGTATTCAAGGGCC
ATGAATACCGTGTTTGGAGCGTTGCAATATCTCCCGATGGCCGCTTTGCA
GTCAGTGGGAGCACAGATGCAACTGTCAGACTGTGGAAGCTTGGCGAAGA
CGAAGGGGAGAGCCATGTATTAGAGGGACATAGGGATAGCGTATTGTCAG
TGGCAGCACTAACATCCGCCTGCGTACTTTCAGGTTGCGAAGATGGAAGC
CTCTTCAGCTGGGATTGTCGAGGTCTTCTGAATATTCCAACTGATGCAGA
TTTGTTGTATACAAACAGCGAGCTGTTGAGCAAAGAAACCAAACCAGACG
TCAAACACGAAAGACATCGTGCTGAGGACAAGAGCGTTGGGGAAACTGCC
ACGAAGGGTAGTGATTTATTGATCGCGACGGATTCAAAGAAACTAGATTC
TTCTCCAAGTATACCTAGGCATTTTGAGAACGAGGTCTTGACCCCTACAA
AACTTGCCGAGAAGCCGCAATCATCTCATACATCTCTAACCAGCCAAGAG
ACGGACTCTCTGAAGACGGCTGTTGCGATACCACCACAGAAGGATCCTAG
GTTTGATAAGTCTGCCGCTGAATTAGTCAATGCTCTAAAGCGGATACAGA
CCTTAGAGAGATCTCTCCAACGAACAGAACACACACTTGGGATGAAGGAG
ACTCAGATCACGCAGTTAAAGAAGTCTGTCGCAGAGAAGGATTTGCTCAT
TTCGCGTTTGCAAGGAGAACTGAGTTCGTCCAAGAGACTGCTTCAAGCTG
CGAATGTGCGAAACCTCCTCGAGCAAAACCCTAGGAAGGCAGACGTCACG
CTCGATTATCAGGAACCGGTGAATAAGATTGGGGCGGTGACTGACCAACT
TACCGCTCTCAAAGCAAGATTGGATGCCATGATTGCTACTAACTGA

Coding sequence (CDS) from alignment at NODE_1231_length_12322_cov_4.194506:2332..3927+

>Gcaud4056.t1 ID=Gcaud4056.t1|Name=Gcaud4056.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1596bp|location=Sequence derived from alignment at NODE_1231_length_12322_cov_4.194506:2332..3927+ (Gracilaria caudata M_176_S67 male)
ATGCCCGACTTTGCTAAGAGTCCCGTGCAGACGCTCAGCTTGGCGCCCAA
GAGCAATCTGCTCGCCGCCCAAACCACGCCAAATTCGTTCTCGCTGGCGC
ATATTGCCGCTCCCACCACCTCCAGCCCGTACGCCTTCCAGCCTCGCGAT
GATTTTTCAGCCTCATCGCTGACCTCCTTATGTCTGGCCTCCGCAGATGT
TTTGTATCACGCAGATGCCAGAGGCGCGTTCCATCGGCATGCTGTGGCGG
ATGTGCTGCCTTCTCTTCAATACAGCGTTGACGCGGCACACACTGGCAAC
GAGCTCACCTCTATAACGGCTGTATCCCCTGATTCCGTGGTCGTCACAGC
GGGAAAAGATGGTGCCGTACGATGCTGGGACCCTGAGACACGGCAGTGCA
CTGCCAAGTTAACAGGCCATCGATACGAAGTGCGCTCGGTCGCAGCTTCA
GCGTCCTCCGATGTGGACGGCAGTCCAGTCACCATAATCGCATCAGGGGG
ACGAGACAAGACAATACGATTATGGGATGTTCGCGCGCATTCTTCAAACC
AGCTTCACGCCTTCACGGGGCACTCGGGCTGGGTCCACAGTGTTGCTTTG
ACTGCCAATCCTACTCCCTTGCTTGTCTCGTGCGCTGGCGATAAGACCGT
CCGCGTGTGGGATCTTGTGGCCATGAAAGAGCGCTCAGTATTCAAGGGCC
ATGAATACCGTGTTTGGAGCGTTGCAATATCTCCCGATGGCCGCTTTGCA
GTCAGTGGGAGCACAGATGCAACTGTCAGACTGTGGAAGCTTGGCGAAGA
CGAAGGGGAGAGCCATGTATTAGAGGGACATAGGGATAGCGTATTGTCAG
TGGCAGCACTAACATCCGCCTGCGTACTTTCAGGTTGCGAAGATGGAAGC
CTCTTCAGCTGGGATTGTCGAGGTCTTCTGAATATTCCAACTGATGCAGA
TTTGTTGTATACAAACAGCGAGCTGTTGAGCAAAGAAACCAAACCAGACG
TCAAACACGAAAGACATCGTGCTGAGGACAAGAGCGTTGGGGAAACTGCC
ACGAAGGGTAGTGATTTATTGATCGCGACGGATTCAAAGAAACTAGATTC
TTCTCCAAGTATACCTAGGCATTTTGAGAACGAGGTCTTGACCCCTACAA
AACTTGCCGAGAAGCCGCAATCATCTCATACATCTCTAACCAGCCAAGAG
ACGGACTCTCTGAAGACGGCTGTTGCGATACCACCACAGAAGGATCCTAG
GTTTGATAAGTCTGCCGCTGAATTAGTCAATGCTCTAAAGCGGATACAGA
CCTTAGAGAGATCTCTCCAACGAACAGAACACACACTTGGGATGAAGGAG
ACTCAGATCACGCAGTTAAAGAAGTCTGTCGCAGAGAAGGATTTGCTCAT
TTCGCGTTTGCAAGGAGAACTGAGTTCGTCCAAGAGACTGCTTCAAGCTG
CGAATGTGCGAAACCTCCTCGAGCAAAACCCTAGGAAGGCAGACGTCACG
CTCGATTATCAGGAACCGGTGAATAAGATTGGGGCGGTGACTGACCAACT
TACCGCTCTCAAAGCAAGATTGGATGCCATGATTGCTACTAACTGA